Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=transcript|length=1286bp TCAGAAGTATTAATGTAAAAATGGATGGATACATTCACTGTGAAAGCGAA ATAACCTCAACACAATTTCATAATGACATTGCTCGACATCTTCAAAAGAA CAGATTGTATGGTGATAAATTTACTTTGTTATTCATAAGTGATGATGGAA AGGAAGATATCTCGaaggaagaagaaaatattGTTGTTTTATACAGAACG AAGACGAGAAACGACTTTGCGAGTGACTATTTCGATCAATTAAAAACGCT CGAATTGGGACACGTTTTGATCTATATGAAAAACATTACATCAACTATGG ACTTAGTGCATTTACTCCGACCCATTGTCTCCACTAGAATGTTGGCAATT GCTGAGAGACAAACAAGCGGACGCGGTAGGAGCAACACAAAATGGGAATC GCCTCTCGGATGCGCTATGTTTACTTTTAACCTGGAATATGATTTGGATT CCCCTCTTGGGCAATATCCAGCTTTTTTGGGCTACTTAACTGCTTCTAGT ATAGTTCGTGCCGTCCAGGATTTGACTGAAGGTGTTATTCAACTAAGAAT TAAGTGGCCCAATGACATTTTCGCGCCTGATTGCTCGACCAAGATTGGCG GAACGCTACATGACGTCATACAAAATGGTAGCGGAGCTGTGATAGGTGTT GGGTTTAACGTTGCGAACGAGAAACCGACTGTTTGTTTGAACGCTTTAAT TGACGAATGGAATATGAATAACGGTCAAAAGACACGACAGCCAATCACCA TTCAGCAGTTCGTGTCCTGCTTCATGAACCACTTCGAgcgttttttcaaa ctttttcaaaatggaaaaCGTGAGgaacttttaaatgtttatttagcTAC TTGGCTTCATCAAAACCAAACTTTCTCTAACCAAATCGATGAAAATATAA ATCCATATGACGTCATTATCAGAGGTCTGGACAAGAAAGGTTGTTTATTC TGTGAGAAGGTTTTAGACCAATCTGAAGAGAGTATTTCACCACATGGTCT TTCGATGGATGTTGTGAAACAAATCATCCATAAAAAAATCTCACCCCCGT CTTAATAAAAAGTACAGGATTCGTGATTTCGGAAAAGTCCCAAGAGAATC AATAAAGATGGAAGGATAATAACTTTTATGACTTTTTATCGGActatatt tttaatattatcaaaatatttcttatataatTTTCACGAATTTAATCCGA CATATTAAATCTCCAATATTGAAACTCATTGGCTTGATTCGGAAATTCAC CAGGTCAAATGAAgtaattcatttttttattaatct Run BLAST on NCBI protein sequence of TCONS_00058347-protein >TCONS_00058347-protein ID=TCONS_00058347-protein|Name=TCONS_00058347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
RSINVKMDGYIHCESEITSTQFHNDIARHLQKNRLYGDKFTLLFISDDGK EDISKEEENIVVLYRTKTRNDFASDYFDQLKTLELGHVLIYMKNITSTMD LVHLLRPIVSTRMLAIAERQTSGRGRSNTKWESPLGCAMFTFNLEYDLDS PLGQYPAFLGYLTASSIVRAVQDLTEGVIQLRIKWPNDIFAPDCSTKIGG TLHDVIQNGSGAVIGVGFNVANEKPTVCLNALIDEWNMNNGQKTRQPITI QQFVSCFMNHFERFFKLFQNGKREELLNVYLATWLHQNQTFSNQIDENIN PYDVIIRGLDKKGCLFCEKVLDQSEESISPHGLSMDVVKQIIHKKISPPS Run BLAST on NCBI transcript from alignment at scaffold_309:708782..710067 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at scaffold_309:708782..710067 (Clytia hemisphaerica) agattaataaaaaaatgaattacTTCATTTGACCTGGTGAATTTCCGAAT
CAAGCCAATGAGTTTCAATATTGGAGATTTAATATGTCGGATTAAATTCG
TGAAAattatataagaaatattttgataatattaaaaatatagTCCGATA
AAAAGTCATAAAAGTTATTATCCTTCCATCTTTATTGATTCTCTTGGGAC
TTTTCCGAAATCACGAATCCTGTACTTTTTATTAAGACGGGGGTGAGATT
TTTTTATGGATGATTTGTTTCACAACATCCATCGAAAGACCATGTGGTGA
AATACTCTCTTCAGATTGGTCTAAAACCTTCTCACAGAATAAACAACCTT
TCTTGTCCAGACCTCTGATAATGACGTCATATGGATTTATATTTTCATCG
ATTTGGTTAGAGAAAGTTTGGTTTTGATGAAGCCAAGTAgctaaataaac
atttaaaagttcCTCACGttttccattttgaaaaagtttgaaaaaacgcT
CGAAGTGGTTCATGAAGCAGGACACGAACTGCTGAATGGTGATTGGCTGT
CGTGTCTTTTGACCGTTATTCATATTCCATTCGTCAATTAAAGCGTTCAA
ACAAACAGTCGGTTTCTCGTTCGCAACGTTAAACCCAACACCTATCACAG
CTCCGCTACCATTTTGTATGACGTCATGTAGCGTTCCGCCAATCTTGGTC
GAGCAATCAGGCGCGAAAATGTCATTGGGCCACTTAATTCTTAGTTGAAT
AACACCTTCAGTCAAATCCTGGACGGCACGAACTATACTAGAAGCAGTTA
AGTAGCCCAAAAAAGCTGGATATTGCCCAAGAGGGGAATCCAAATCATAT
TCCAGGTTAAAAGTAAACATAGCGCATCCGAGAGGCGATTCCCATTTTGT
GTTGCTCCTACCGCGTCCGCTTGTTTGTCTCTCAGCAATTGCCAACATTC
TAGTGGAGACAATGGGTCGGAGTAAATGCACTAAGTCCATAGTTGATGTA
ATGTTTTTCATATAGATCAAAACGTGTCCCAATTCGAGCGTTTTTAATTG
ATCGAAATAGTCACTCGCAAAGTCGTTTCTCGTCTTCGTTCTGTATAAAA
CAACaatattttcttcttccttCGAGATATCTTCCTTTCCATCATCACTT
ATGAATAACAAAGTAAATTTATCACCATACAATCTGTTCTTTTGAAGATG
TCGAGCAATGTCATTATGAAATTGTGTTGAGGTTATTTCGCTTTCACAGT
GAATGTATCCATCCATTTTTACATTAATACTTCTGA Coding sequence (CDS) from alignment at scaffold_309:708782..710067 >TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_309:708782..710067 (Clytia hemisphaerica) TTAAGACGGGGGTGAGATTTTTTTATGGATGATTTGTTTCACAACATCCA TCGAAAGACCATGTGGTGAAATACTCTCTTCAGATTGGTCTAAAACCTTC TCACAGAATAAACAACCTTTCTTGTCCAGACCTCTGATAATGACGTCATA TGGATTTATATTTTCATCGATTTGGTTAGAGAAAGTTTGGTTTTGATGAA GCCAAGTAgctaaataaacatttaaaagttcCTCACGttttccattttga aaaagtttgaaaaaacgcTCGAAGTGGTTCATGAAGCAGGACACGAACTG CTGAATGGTGATTGGCTGTCGTGTCTTTTGACCGTTATTCATATTCCATT CGTCAATTAAAGCGTTCAAACAAACAGTCGGTTTCTCGTTCGCAACGTTA AACCCAACACCTATCACAGCTCCGCTACCATTTTGTATGACGTCATGTAG CGTTCCGCCAATCTTGGTCGAGCAATCAGGCGCGAAAATGTCATTGGGCC ACTTAATTCTTAGTTGAATAACACCTTCAGTCAAATCCTGGACGGCACGA ACTATACTAGAAGCAGTTAAGTAGCCCAAAAAAGCTGGATATTGCCCAAG AGGGGAATCCAAATCATATTCCAGGTTAAAAGTAAACATAGCGCATCCGA GAGGCGATTCCCATTTTGTGTTGCTCCTACCGCGTCCGCTTGTTTGTCTC TCAGCAATTGCCAACATTCTAGTGGAGACAATGGGTCGGAGTAAATGCAC TAAGTCCATAGTTGATGTAATGTTTTTCATATAGATCAAAACGTGTCCCA ATTCGAGCGTTTTTAATTGATCGAAATAGTCACTCGCAAAGTCGTTTCTC GTCTTCGTTCTGTATAAAACAACaatattttcttcttccttCGAGATATC TTCCTTTCCATCATCACTTATGAATAACAAAGTAAATTTATCACCATACA ATCTGTTCTTTTGAAGATGTCGAGCAATGTCATTATGAAATTGTGTTGAG GTTATTTCGCTTTCACAGTGAATGTATCCATCCATTTTTACATTAATACT TCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058347-exon-scaffold_309-1491911889:708782..710067 | TCONS_00058347-exon-scaffold_309-1491911889:708782..710067 | Clytia hemisphaerica | exon |
TCONS_00058347-exon-scaffold_309-1510915933:708782..710067 | TCONS_00058347-exon-scaffold_309-1510915933:708782..710067 | Clytia hemisphaerica | exon |
TCONS_00058347-exon-scaffold_309-1575043694:708782..710067 | TCONS_00058347-exon-scaffold_309-1575043694:708782..710067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_309 | supercontig | scaffold_309:708782..710067 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004143 | BPL_LPL_catalytic |
IPR004408 | Biotin_CoA_COase_ligase |
Vocabulary: Biological Process
Term | Definition |
GO:0006464 | cellular protein modification process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004077 | biotin-[acetyl-CoA-carboxylase] ligase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006464 |
cellular protein modification process |
molecular_function |
GO:0004077 |
biotin-[acetyl-CoA-carboxylase] ligase activity |
Blast
BLAST of TCONS_00058347 vs. Swiss-Prot (Human)
Match: BPL1 (Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.372e-34 Identity = 94/287 (32.75%), Postives = 148/287 (51.57%), Query Frame = 3 Query: 216 FASDYFD------QLKTLELGHVLIYMKNITSTMDLVH--LLRPIVSTRMLAIAERQTSGRGRSNTKWESPLGCAMFTFNLEYDLDSPLGQYPAFLGYLTASSIVRAVQDLTE-GVIQLRIKWPNDIFAPDCSTKIGGTLHDVIQNGSG--AVIGVGFNVANEKPTVCLNALIDEWNMNNGQKTRQPITIQQFVSCFMNHFERFFKLFQNGKREELLNVYLATWLHQNQTFSNQIDENINPYDVIIRGLDKKGCLFCEKVLDQSEE--SISPHGLSMDVVKQIIHKK 1037
F+S++F+ L+T +LG V+++ + +TM L+ + + ++ IA RQT G+GR W SP+GCA+ T + L S LGQ F+ +L + ++V AV+ + E I LR+KWPNDI+ D KIGG L + G +IG GFNV N PT+C+N LI E+N + + + P+ ++ + E+ K FQ+ +L +Y W+H Q E V I GLD G L +V + E ++ P G S D+++ +I K
Sbjct: 446 FSSEHFNLEIYRQNLQTKQLGKVILFAEVTPTTMRLLDGLMFQTPQEMGLIVIAARQTEGKGRGGNVWLSPVGCALSTLLISIPLRSQLGQRIPFVQHLMSVAVVEAVRSIPEYQDINLRVKWPNDIYYSDL-MKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLITEYNKQHKAELK-PLRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVHSGQQVHLGSAEGPK---VSIVGLDDSGFL---QVHQEGGEVVTVHPDGNSFDMLRNLILPK 724
The following BLAST results are available for this feature:
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