TCONS_00058347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058347
Unique NameTCONS_00058347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=transcript|length=1286bp
TCAGAAGTATTAATGTAAAAATGGATGGATACATTCACTGTGAAAGCGAA
ATAACCTCAACACAATTTCATAATGACATTGCTCGACATCTTCAAAAGAA
CAGATTGTATGGTGATAAATTTACTTTGTTATTCATAAGTGATGATGGAA
AGGAAGATATCTCGaaggaagaagaaaatattGTTGTTTTATACAGAACG
AAGACGAGAAACGACTTTGCGAGTGACTATTTCGATCAATTAAAAACGCT
CGAATTGGGACACGTTTTGATCTATATGAAAAACATTACATCAACTATGG
ACTTAGTGCATTTACTCCGACCCATTGTCTCCACTAGAATGTTGGCAATT
GCTGAGAGACAAACAAGCGGACGCGGTAGGAGCAACACAAAATGGGAATC
GCCTCTCGGATGCGCTATGTTTACTTTTAACCTGGAATATGATTTGGATT
CCCCTCTTGGGCAATATCCAGCTTTTTTGGGCTACTTAACTGCTTCTAGT
ATAGTTCGTGCCGTCCAGGATTTGACTGAAGGTGTTATTCAACTAAGAAT
TAAGTGGCCCAATGACATTTTCGCGCCTGATTGCTCGACCAAGATTGGCG
GAACGCTACATGACGTCATACAAAATGGTAGCGGAGCTGTGATAGGTGTT
GGGTTTAACGTTGCGAACGAGAAACCGACTGTTTGTTTGAACGCTTTAAT
TGACGAATGGAATATGAATAACGGTCAAAAGACACGACAGCCAATCACCA
TTCAGCAGTTCGTGTCCTGCTTCATGAACCACTTCGAgcgttttttcaaa
ctttttcaaaatggaaaaCGTGAGgaacttttaaatgtttatttagcTAC
TTGGCTTCATCAAAACCAAACTTTCTCTAACCAAATCGATGAAAATATAA
ATCCATATGACGTCATTATCAGAGGTCTGGACAAGAAAGGTTGTTTATTC
TGTGAGAAGGTTTTAGACCAATCTGAAGAGAGTATTTCACCACATGGTCT
TTCGATGGATGTTGTGAAACAAATCATCCATAAAAAAATCTCACCCCCGT
CTTAATAAAAAGTACAGGATTCGTGATTTCGGAAAAGTCCCAAGAGAATC
AATAAAGATGGAAGGATAATAACTTTTATGACTTTTTATCGGActatatt
tttaatattatcaaaatatttcttatataatTTTCACGAATTTAATCCGA
CATATTAAATCTCCAATATTGAAACTCATTGGCTTGATTCGGAAATTCAC
CAGGTCAAATGAAgtaattcatttttttattaatct
Run BLAST on NCBI

protein sequence of TCONS_00058347-protein

>TCONS_00058347-protein ID=TCONS_00058347-protein|Name=TCONS_00058347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
RSINVKMDGYIHCESEITSTQFHNDIARHLQKNRLYGDKFTLLFISDDGK
EDISKEEENIVVLYRTKTRNDFASDYFDQLKTLELGHVLIYMKNITSTMD
LVHLLRPIVSTRMLAIAERQTSGRGRSNTKWESPLGCAMFTFNLEYDLDS
PLGQYPAFLGYLTASSIVRAVQDLTEGVIQLRIKWPNDIFAPDCSTKIGG
TLHDVIQNGSGAVIGVGFNVANEKPTVCLNALIDEWNMNNGQKTRQPITI
QQFVSCFMNHFERFFKLFQNGKREELLNVYLATWLHQNQTFSNQIDENIN
PYDVIIRGLDKKGCLFCEKVLDQSEESISPHGLSMDVVKQIIHKKISPPS
Run BLAST on NCBI

transcript from alignment at scaffold_309:708782..710067

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at scaffold_309:708782..710067 (Clytia hemisphaerica)
agattaataaaaaaatgaattacTTCATTTGACCTGGTGAATTTCCGAAT CAAGCCAATGAGTTTCAATATTGGAGATTTAATATGTCGGATTAAATTCG TGAAAattatataagaaatattttgataatattaaaaatatagTCCGATA AAAAGTCATAAAAGTTATTATCCTTCCATCTTTATTGATTCTCTTGGGAC TTTTCCGAAATCACGAATCCTGTACTTTTTATTAAGACGGGGGTGAGATT TTTTTATGGATGATTTGTTTCACAACATCCATCGAAAGACCATGTGGTGA AATACTCTCTTCAGATTGGTCTAAAACCTTCTCACAGAATAAACAACCTT TCTTGTCCAGACCTCTGATAATGACGTCATATGGATTTATATTTTCATCG ATTTGGTTAGAGAAAGTTTGGTTTTGATGAAGCCAAGTAgctaaataaac atttaaaagttcCTCACGttttccattttgaaaaagtttgaaaaaacgcT CGAAGTGGTTCATGAAGCAGGACACGAACTGCTGAATGGTGATTGGCTGT CGTGTCTTTTGACCGTTATTCATATTCCATTCGTCAATTAAAGCGTTCAA ACAAACAGTCGGTTTCTCGTTCGCAACGTTAAACCCAACACCTATCACAG CTCCGCTACCATTTTGTATGACGTCATGTAGCGTTCCGCCAATCTTGGTC GAGCAATCAGGCGCGAAAATGTCATTGGGCCACTTAATTCTTAGTTGAAT AACACCTTCAGTCAAATCCTGGACGGCACGAACTATACTAGAAGCAGTTA AGTAGCCCAAAAAAGCTGGATATTGCCCAAGAGGGGAATCCAAATCATAT TCCAGGTTAAAAGTAAACATAGCGCATCCGAGAGGCGATTCCCATTTTGT GTTGCTCCTACCGCGTCCGCTTGTTTGTCTCTCAGCAATTGCCAACATTC TAGTGGAGACAATGGGTCGGAGTAAATGCACTAAGTCCATAGTTGATGTA ATGTTTTTCATATAGATCAAAACGTGTCCCAATTCGAGCGTTTTTAATTG ATCGAAATAGTCACTCGCAAAGTCGTTTCTCGTCTTCGTTCTGTATAAAA CAACaatattttcttcttccttCGAGATATCTTCCTTTCCATCATCACTT ATGAATAACAAAGTAAATTTATCACCATACAATCTGTTCTTTTGAAGATG TCGAGCAATGTCATTATGAAATTGTGTTGAGGTTATTTCGCTTTCACAGT GAATGTATCCATCCATTTTTACATTAATACTTCTGA

Coding sequence (CDS) from alignment at scaffold_309:708782..710067

>TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_309:708782..710067 (Clytia hemisphaerica)
TTAAGACGGGGGTGAGATTTTTTTATGGATGATTTGTTTCACAACATCCA
TCGAAAGACCATGTGGTGAAATACTCTCTTCAGATTGGTCTAAAACCTTC
TCACAGAATAAACAACCTTTCTTGTCCAGACCTCTGATAATGACGTCATA
TGGATTTATATTTTCATCGATTTGGTTAGAGAAAGTTTGGTTTTGATGAA
GCCAAGTAgctaaataaacatttaaaagttcCTCACGttttccattttga
aaaagtttgaaaaaacgcTCGAAGTGGTTCATGAAGCAGGACACGAACTG
CTGAATGGTGATTGGCTGTCGTGTCTTTTGACCGTTATTCATATTCCATT
CGTCAATTAAAGCGTTCAAACAAACAGTCGGTTTCTCGTTCGCAACGTTA
AACCCAACACCTATCACAGCTCCGCTACCATTTTGTATGACGTCATGTAG
CGTTCCGCCAATCTTGGTCGAGCAATCAGGCGCGAAAATGTCATTGGGCC
ACTTAATTCTTAGTTGAATAACACCTTCAGTCAAATCCTGGACGGCACGA
ACTATACTAGAAGCAGTTAAGTAGCCCAAAAAAGCTGGATATTGCCCAAG
AGGGGAATCCAAATCATATTCCAGGTTAAAAGTAAACATAGCGCATCCGA
GAGGCGATTCCCATTTTGTGTTGCTCCTACCGCGTCCGCTTGTTTGTCTC
TCAGCAATTGCCAACATTCTAGTGGAGACAATGGGTCGGAGTAAATGCAC
TAAGTCCATAGTTGATGTAATGTTTTTCATATAGATCAAAACGTGTCCCA
ATTCGAGCGTTTTTAATTGATCGAAATAGTCACTCGCAAAGTCGTTTCTC
GTCTTCGTTCTGTATAAAACAACaatattttcttcttccttCGAGATATC
TTCCTTTCCATCATCACTTATGAATAACAAAGTAAATTTATCACCATACA
ATCTGTTCTTTTGAAGATGTCGAGCAATGTCATTATGAAATTGTGTTGAG
GTTATTTCGCTTTCACAGTGAATGTATCCATCCATTTTTACATTAATACT
TCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036756XLOC_036756Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058347-proteinTCONS_00058347-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058347-exon-scaffold_309-1491911889:708782..710067TCONS_00058347-exon-scaffold_309-1491911889:708782..710067Clytia hemisphaericaexon
TCONS_00058347-exon-scaffold_309-1510915933:708782..710067TCONS_00058347-exon-scaffold_309-1510915933:708782..710067Clytia hemisphaericaexon
TCONS_00058347-exon-scaffold_309-1575043694:708782..710067TCONS_00058347-exon-scaffold_309-1575043694:708782..710067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:708782..710067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.587197 tpm) - - (11.5907 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.49885 8.38408 7.64605 6.2398 3.28731 2.8083 1.60935 2.33927 1.66554 2.81949 1.16809 1.55765 2.21273 2.59371 6.80867 4.13514 3.26421 3.04156 11.5907 7.36526 2.22946 1.67779 10.2356 9.06529 3.14771 2.65144 0.587197 0.915906 3.65622 4.39563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004143BPL_LPL_catalytic
IPR004408Biotin_CoA_COase_ligase
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0004077biotin-[acetyl-CoA-carboxylase] ligase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700800900100011001200Expect = 1.37e-34 / Id = 32.75SequenceBPL1
Match NameE-valueIdentityDescription
BPL11.372e-3432.75Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=... [more]
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