TCONS_00058353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058353
Unique NameTCONS_00058353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058353 ID=TCONS_00058353|Name=TCONS_00058353|organism=Clytia hemisphaerica|type=transcript|length=532bp
TACCTCCTTTGTGGATTGGTGTAATTGTGCTTTGTTTCAGTTCGTCTGGG
ACTATTCCTTTGTCAAGGCTTTTCCTCCAAAGGATGGAAAGAGGAGTGGA
TAATTCTTCTTTACATTGTTTTAAGAGAATTGCAGGAAGGCCGTCAGGAC
CAGGAGCTGCACATTGAGATAACTCCTTTATTGCTTTGACAAGATCATTC
TCTGTGACTTGGAGGTCTGGGATGTTGTTTACATTGATTTCATTATCTTG
GCGTTGTGTTGTATTATCTGGTTTTGGAACACTGAAGACATATTGCTTTG
ATAGGATTTCAGCCATTTCTTTATTCCTTTGTGTCAGTTTACCATTCTCA
TTCATGAGAGGGCCAATTTTTGTCTttatctttgatttcttttttgcata
tgaaaagaaatactttgaatttttatttattgagTTTATTGCTTTAGTTT
CCATGTAGGGCTTGAAATCATTGAAAGACTTTTGCAGGTCCTTTTCTATT
TGAAAAAGTTCCTTTGTTATTTTGCCTTTCTT
Run BLAST on NCBI

protein sequence of TCONS_00058353-protein

>TCONS_00058353-protein ID=TCONS_00058353-protein|Name=TCONS_00058353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
KKGKITKELFQIEKDLQKSFNDFKPYMETKAINSINKNSKYFFSYAKKKS
KIKTKIGPLMNENGKLTQRNKEMAEILSKQYVFSVPKPDNTTQRQDNEIN
VNNIPDLQVTENDLVKAIKELSQCAAPGPDGLPAILLKQCKEELSTPLSI
LWRKSLDKGIVPDELKQSTITPIHKGG
Run BLAST on NCBI

transcript from alignment at scaffold_309:901458..901989

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058353 ID=TCONS_00058353|Name=TCONS_00058353|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_309:901458..901989 (Clytia hemisphaerica)
AAGAAAGGCAAAATAACAAAGGAACTTTTTCAAATAGAAAAGGACCTGCA
AAAGTCTTTCAATGATTTCAAGCCCTACATGGAAACTAAAGCAATAAAct
caataaataaaaattcaaagtatttcttttcatatgcaaaaaagaaatca
aagataaAGACAAAAATTGGCCCTCTCATGAATGAGAATGGTAAACTGAC
ACAAAGGAATAAAGAAATGGCTGAAATCCTATCAAAGCAATATGTCTTCA
GTGTTCCAAAACCAGATAATACAACACAACGCCAAGATAATGAAATCAAT
GTAAACAACATCCCAGACCTCCAAGTCACAGAGAATGATCTTGTCAAAGC
AATAAAGGAGTTATCTCAATGTGCAGCTCCTGGTCCTGACGGCCTTCCTG
CAATTCTCTTAAAACAATGTAAAGAAGAATTATCCACTCCTCTTTCCATC
CTTTGGAGGAAAAGCCTTGACAAAGGAATAGTCCCAGACGAACTGAAACA
AAGCACAATTACACCAATCCACAAAGGAGGTA

Coding sequence (CDS) from alignment at scaffold_309:901458..901989

>TCONS_00058353 ID=TCONS_00058353|Name=TCONS_00058353|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_309:901458..901989 (Clytia hemisphaerica)
AAGAAAGGCAAAATAACAAAGGAACTTTTTCAAATAGAAAAGGACCTGCA
AAAGTCTTTCAATGATTTCAAGCCCTACATGGAAACTAAAGCAATAAAct
caataaataaaaattcaaagtatttcttttcatatgcaaaaaagaaatca
aagataaAGACAAAAATTGGCCCTCTCATGAATGAGAATGGTAAACTGAC
ACAAAGGAATAAAGAAATGGCTGAAATCCTATCAAAGCAATATGTCTTCA
GTGTTCCAAAACCAGATAATACAACACAACGCCAAGATAATGAAATCAAT
GTAAACAACATCCCAGACCTCCAAGTCACAGAGAATGATCTTGTCAAAGC
AATAAAGGAGTTATCTCAATGTGCAGCTCCTGGTCCTGACGGCCTTCCTG
CAATTCTCTTAAAACAATGTAAAGAAGAATTATCCACTCCTCTTTCCATC
CTTTGGAGGAAAAGCCTTGACAAAGGAATAGTCCCAGACGAACTGAAACA
AAGCACAATTACACCAATCCACAAAGGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036762XLOC_036762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058353-exon-scaffold_309-1491911889:901458..901989TCONS_00058353-exon-scaffold_309-1491911889:901458..901989Clytia hemisphaericaexon
TCONS_00058353-exon-scaffold_309-1510915933:901458..901989TCONS_00058353-exon-scaffold_309-1510915933:901458..901989Clytia hemisphaericaexon
TCONS_00058353-exon-scaffold_309-1575043694:901458..901989TCONS_00058353-exon-scaffold_309-1575043694:901458..901989Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058353-proteinTCONS_00058353-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:901458..901989 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53773	1.49953	2.36292	2.79844	0.888738	0.702293	0.141214	0.528813	0.370234	0.114649	0	0.43891	0.2922	0.227589	0.561328	0.803188	0.16491	0.507083	0	0.610907	0.743385	0.310797	0.377815	0	0.707571	0.736738	0.30122	0	0.243824	0.745253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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