|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058356 ID=TCONS_00058356|Name=TCONS_00058356|organism=Clytia hemisphaerica|type=transcript|length=3482bp
TATCTGTCAATCTTTAAAGAATTAAAGTCGTTTGACAAAAGCAATTTAAT
CAATATAATAAGCAGCAGTATTTATCAAAACACAATGATCGAATTATCGA
TGACAAAAGATTtacgtttattttttttaaagacatgGATTGGCTTTTAA
AGATCTCTCTGCTGGATATCAAGACATCGAGTAATTAACTTACTGCTTTT
TAATCTTCAGCCTCATTTTAATATACTTTGGAACACTGTTAGCCCCTTCT
GATGGAATGTTCTAAAGTTCATCTAGAATTGAATACTGAATTATAAAAAT
GTTTCCTTTACTTTGTTAAAAATATTGTTTCTATTCTCAATTTGAGCCTT
TTGGATGACTCACTTTTACACAAATTCAAATTCTACATAAACAAAATAGG
ATATAACAGGCCTGAAAGAGTTGTGAAAGAAGCAAGGCCGAGACACATAA
CAGATGATACATGTGATATCGTCCcttaaaaaaacaatacaaattTGACA
AGAAAAAAGACAGGCAAGTGGAAATCCTCAAAATAATAAGACtatgtttc
ttttttatctgATGGAGTAGTAATTTAAGCATTAAACAATCCAAAATTAA
GACCCAAAAGCATTTAAAACAAGCTTTTATACTCGTTTTATGTGTCTGGA
TTTCTATCTAATTGTCTTTAAAGTTTTCcagaaaaagttcaaaaaaactt
ttcattcttgAGGATCCTTTAAAATCCAAATCAAGATCATTTCAAAATGA
TATGGTACAGGAGAAATACAGCAAAAGCCAGAGAATAATCTCTTTAAGGC
AGAAAATTGCATGTGGGATGGGAGCATACTTTGACATTAGTACATGTATA
CCAAGTTAGTCATCAAAATTTGgatcattgggctcttccagaaaaaatcc
gttcatgtgGGGTgtaggatatattatttttttcatgaattacccctgga
cattttgattttcaaccccctggacacgggttatacccctCGGCAAACAT
CAAATCAACCCCGTGGACACAAAAAATTACCCCTGGACATTGGAATTTAC
CCCCTGGacattgcaattttttggtattttttcaatacccctggacaatt
catcctccaccccccatgaacagattttttctggaagagcccattgcttT
TTAGGGGCTAAAATCTATGAGGGGTATTACATTGTACAAAGGATACATCC
TCCATCCCCACGTGTATTGTATTATTGTATATACATTAAAGGTAGAAATT
TTGGCAGATTTggccaaaatccgccaaattaagttcccaccaaaattccT
TTAATGTATGTATTTTCTGGATGATCTCTTTTCAAAATTCAGTATACACC
AAGACAAAATAGAGACAACCCTTAATTAACAAGAACTTTAACTGAGCTGA
ATAAAacaggaactaatttttgtggtcaaaaaattcagaaaaatggCATT
CTGCAGACCAACTGTCCCTTTTCAAAATTCAGTATCCACCAAGGTCAAAA
CCGtggtcaaaaaaattcaaaatagcaTTCTGCAGACTTACTTTAGCGAT
TTGGCTTTTgacaaatttattttgtttttctagGAATCTTTCAATATTCT
CATAAAATTGGCAATAATTGTATTTTGCACAAACTAATTTTTGTGTATTA
CTGAAAGAAATGATGAAAACTGAGAAAATCGGTTTCCACAAAAGTTAGTT
CCATTAAAGTTTACCTTGCCTTTGTACCAAGAAAAGTTTTCATTCTTCCT
ATTGGAAACTTGACGTGTTATATTAGgcccaaatttaaaaaatgtaaaat
gctGGTGAACTTGTGTAAATTATAATATATGTATGCAAGTGCCCCAATTT
GTGGTAGTGCTTTTAAGGTGTTAAGTTATCCCAAAAGATAATTaaattac
agtgcaaatttctATAATTGATGCATGTGCTGGAAATGAAGCAACACGTG
TATATGTCAATTAAAGTTTATATCAAGTAATCatatttctacaaaaaaaa
aattcactttttacaGTTGCTAATGGCAGAAAATCTTGTAACAAAAGTTC
TAAAACACAGATAAGCTTGATATTGACTCCAATGATAAAGCACTGATTTG
TTCACcaaatgaatgaataaaaataaataacattATGATACAAAAGTACT
aaagtttctttgaaaatagCGAAAACAGAATTAAGGTTGGAGTTAAGAAA
GTCAAGCTACTAGGTATTTACTAGCAAAAAGTGCATGCAAATTTCTGAAA
CGCTCTACTGCATCAATATCTCATTGAGAAACTTTTGATATGAAATGACA
GTACAAAAGTTTGGCGTCTTCTAAAATGACACTTTTTTCTAGTTCGACTG
CAAAAGGTTCTGTGTAGTGCAAGTGTGTTTTGTTCCCAAATTAATCATCA
ATATCGCAATCATCCATAGCTTCCatttcatcttcaatttctttGCTCTT
AGCGTTCCATGATTCAATTTCACTTTTTGCTTCCTTGATATTATTAGAAA
GAACATTGCATTGACGTTCAGCTGCTTCATATCTGACTTCAGCATCCTTA
AATCTACCTTCAAGCACAATCAAGTTCTCGGCGTTTTGTTCCTCTTTTTC
TGCGGATTCTCCTTCTCTTTCTTCTAATTCTCTCAATCTGCTTGATGTTT
CATCAATGGTTCCCTGTAAGCTTTCAACACGCTCTTCCAATTGTTCGGCT
TTCGATTTGGTTTTGTCAAGATCACGTTGTATGACAACTTTCTTTCGGGC
AGCTTCAACTTTCTTTGTGTTGGATTCTTCAAGCTTGAGTTTAGCTTCCT
TCACTTCATCCTCGAGAGTTTGGATGCGTTCGTCTCCGGAGGTTTCTTTT
TCTTCCAGTTCTTTTCTGCCTTCCTCGAGGGTATCAAGGTTGCTCTTGAC
ATCTGCTAGTTTGCCTTCATTTTCTTCTATTCTGGCATTGACATCATCAA
GCTCTTTCTCTAACAATTTGATTCTTCTCTCAAAACTTTGAACCTCACCC
TCAGCTTTCTCAAGTCTGCTTTGGGCTTCAATAGTTGCAGCTTTGTGATC
TTGCTTTCTTCCATCAGCATCATCAATTTGGTTTGAGATTTCAGCTAATT
TAGCTTTGAGTTTTGAGAGTTTTCCACCTTCCATTTTGAGAAAAGATTAT
ccagatgttttgatttttgaggtgACAGATGTTCAGCGTCCAGCAACAAA
CAACAACTCCAAGCTTTCTCCGCTCCGAAAGTTCAACTAATGACAACTAT
CCAGTGTAGTTTGTGAAGCAATCTTGAATTAAAGCAGTCTTATGTATTGT
TACTGAGGGCGTGATACAAAGGGAGTATCAGATGGACAACATCTATTTCT
CCATTATGAATGGCTAAATAAGCTCaagtatttatcaaaacaaTACAGAC
GAAGGCTGGACAATCGACGACCGCCATTATTGACCTTATATGGAATatca
accaaaacaaaaatgatttcacTGGATTCGAT Run BLAST on NCBI protein sequence of TCONS_00058356-protein >TCONS_00058356-protein ID=TCONS_00058356-protein|Name=TCONS_00058356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MEGGKLSKLKAKLAEISNQIDDADGRKQDHKAATIEAQSRLEKAEGEVQS
FERRIKLLEKELDDVNARIEENEGKLADVKSNLDTLEEGRKELEEKETSG
DERIQTLEDEVKEAKLKLEESNTKKVEAARKKVVIQRDLDKTKSKAEQLE
ERVESLQGTIDETSSRLRELEEREGESAEKEEQNAENLIVLEGRFKDAEV
RYEAAERQCNVLSNNIKEAKSEIESWNAKSKEIEDEMEAMDDCDIDD Run BLAST on NCBI transcript from alignment at scaffold_309:926911..930392 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058356 ID=TCONS_00058356|Name=TCONS_00058356|organism=Clytia hemisphaerica|type=transcript|length=3482bp|location=Sequence derived from alignment at scaffold_309:926911..930392 (Clytia hemisphaerica)
ATCGAATCCAgtgaaatcatttttgttttggttgatATTCCATATAAGGT
CAATAATGGCGGTCGTCGATTGTCCAGCCTTCGTCTGTAttgttttgata
aatacttGAGCTTATTTAGCCATTCATAATGGAGAAATAGATGTTGTCCA
TCTGATACTCCCTTTGTATCACGCCCTCAGTAACAATACATAAGACTGCT
TTAATTCAAGATTGCTTCACAAACTACACTGGATAGTTGTCATTAGTTGA
ACTTTCGGAGCGGAGAAAGCTTGGAGTTGTTGTTTGTTGCTGGACGCTGA
ACATCTGTcacctcaaaaatcaaaacatctggATAATCTTTTCTCAAAAT
GGAAGGTGGAAAACTCTCAAAACTCAAAGCTAAATTAGCTGAAATCTCAA
ACCAAATTGATGATGCTGATGGAAGAAAGCAAGATCACAAAGCTGCAACT
ATTGAAGCCCAAAGCAGACTTGAGAAAGCTGAGGGTGAGGTTCAAAGTTT
TGAGAGAAGAATCAAATTGTTAGAGAAAGAGCTTGATGATGTCAATGCCA
GAATAGAAGAAAATGAAGGCAAACTAGCAGATGTCAAGAGCAACCTTGAT
ACCCTCGAGGAAGGCAGAAAAGAACTGGAAGAAAAAGAAACCTCCGGAGA
CGAACGCATCCAAACTCTCGAGGATGAAGTGAAGGAAGCTAAACTCAAGC
TTGAAGAATCCAACACAAAGAAAGTTGAAGCTGCCCGAAAGAAAGTTGTC
ATACAACGTGATCTTGACAAAACCAAATCGAAAGCCGAACAATTGGAAGA
GCGTGTTGAAAGCTTACAGGGAACCATTGATGAAACATCAAGCAGATTGA
GAGAATTAGAAGAAAGAGAAGGAGAATCCGCAGAAAAAGAGGAACAAAAC
GCCGAGAACTTGATTGTGCTTGAAGGTAGATTTAAGGATGCTGAAGTCAG
ATATGAAGCAGCTGAACGTCAATGCAATGTTCTTTCTAATAATATCAAGG
AAGCAAAAAGTGAAATTGAATCATGGAACGCTAAGAGCaaagaaattgaa
gatgaaatGGAAGCTATGGATGATTGCGATATTGATGATTAATTTGGGAA
CAAAACACACTTGCACTACACAGAACCTTTTGCAGTCGAACTAGAAAAAA
GTGTCATTTTAGAAGACGCCAAACTTTTGTACTGTCATTTCATATCAAAA
GTTTCTCAATGAGATATTGATGCAGTAGAGCGTTTCAGAAATTTGCATGC
ACTTTTTGCTAGTAAATACCTAGTAGCTTGACTTTCTTAACTCCAACCTT
AATTCTGTTTTCGctattttcaaagaaactttAGTACTTTTGTATCATaa
tgttatttatttttattcattcatttgGTGAACAAATCAGTGCTTTATCA
TTGGAGTCAATATCAAGCTTATCTGTGTTTTAGAACTTTTGTTACAAGAT
TTTCTGCCATTAGCAACtgtaaaaagtgaattttttttttgtagaaatat
GATTACTTGATATAAACTTTAATTGACATATACACGTGTTGCTTCATTTC
CAGCACATGCATCAATTATagaaatttgcactgtaatttAATTATCTTTT
GGGATAACTTAACACCTTAAAAGCACTACCACAAATTGGGGCACTTGCAT
ACATATATTATAATTTACACAAGTTCACCagcattttacattttttaaat
ttgggcCTAATATAACACGTCAAGTTTCCAATAGGAAGAATGAAAACTTT
TCTTGGTACAAAGGCAAGGTAAACTTTAATGGAACTAACTTTTGTGGAAA
CCGATTTTCTCAGTTTTCATCATTTCTTTCAGTAATACACAAAAATTAGT
TTGTGCAAAATACAATTATTGCCAATTTTATGAGAATATTGAAAGATTCc
tagaaaaacaaaataaatttgtcAAAAGCCAAATCGCTAAAGTAAGTCTG
CAGAAtgctattttgaatttttttgaccaCGGTTTTGACCTTGGTGGATA
CTGAATTTTGAAAAGGGACAGTTGGTCTGCAGAATGccatttttctgaat
tttttgaccacaaaaattagttcctgtTTTATTCAGCTCAGTTAAAGTTC
TTGTTAATTAAGGGTTGTCTCTATTTTGTCTTGGTGTATACTGAATTTTG
AAAAGAGATCATCCAGAAAATACATACATTAAAggaattttggtgggaac
ttaatttggcggattttggccAAATCTGCCAAAATTTCTACCTTTAATGT
ATATACAATAATACAATACACGTGGGGATGGAGGATGTATCCTTTGTACA
ATGTAATACCCCTCATAGATTTTAGCCCCTAAAaagcaatgggctcttcc
agaaaaaatctgttcatggggggtggaggatgaattgtccaggggtattg
aaaaaataccaaaaaattgcaatgtCCAGGGGGTAAATTCCAATGTCCAG
GGGTAATTTTTTGTGTCCACGGGGTTGATTTGATGTTTGCCGaggggtat
aacccgtgtccagggggttgaaaatcaaaatgtccaggggtaattcatga
aaaaaataatatatcctacACCCcacatgaacggattttttctggaagag
cccaatgatcCAAATTTTGATGACTAACTTGGTATACATGTACTAATGTC
AAAGTATGCTCCCATCCCACATGCAATTTTCTGCCTTAAAGAGATTATTC
TCTGGCTTTTGCTGTATTTCTCCTGTACCATATCATTTTGAAATGATCTT
GATTTGGATTTTAAAGGATCCTcaagaatgaaaagtttttttgaactttt
tctgGAAAACTTTAAAGACAATTAGATAGAAATCCAGACACATAAAACGA
GTATAAAAGCTTGTTTTAAATGCTTTTGGGTCTTAATTTTGGATTGTTTA
ATGCTTAAATTACTACTCCATcagataaaaaagaaacataGTCTTATTAT
TTTGAGGATTTCCACTTGCCTGTCTTTTTTCTTGTCAaatttgtattgtt
tttttaagGGACGATATCACATGTATCATCTGTTATGTGTCTCGGCCTTG
CTTCTTTCACAACTCTTTCAGGCCTGTTATATCCTATTTTGTTTATGTAG
AATTTGAATTTGTGTAAAAGTGAGTCATCCAAAAGGCTCAAATTGAGAAT
AGAAACAATATTTTTAACAAAGTAAAGGAAACATTTTTATAATTCAGTAT
TCAATTCTAGATGAACTTTAGAACATTCCATCAGAAGGGGCTAACAGTGT
TCCAAAGTATATTAAAATGAGGCTGAAGATTAAAAAGCAGTAAGTTAATT
ACTCGATGTCTTGATATCCAGCAGAGAGATCTTTAAAAGCCAATCcatgt
ctttaaaaaaaataaacgtaAATCTTTTGTCATCGATAATTCGATCATTG
TGTTTTGATAAATACTGCTGCTTATTATATTGATTAAATTGCTTTTGTCA
AACGACTTTAATTCTTTAAAGATTGACAGATA Coding sequence (CDS) from alignment at scaffold_309:926911..930392 >TCONS_00058356 ID=TCONS_00058356|Name=TCONS_00058356|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_309:926911..930392 (Clytia hemisphaerica)
ATGGAAGGTGGAAAACTCTCAAAACTCAAAGCTAAATTAGCTGAAATCTC
AAACCAAATTGATGATGCTGATGGAAGAAAGCAAGATCACAAAGCTGCAA
CTATTGAAGCCCAAAGCAGACTTGAGAAAGCTGAGGGTGAGGTTCAAAGT
TTTGAGAGAAGAATCAAATTGTTAGAGAAAGAGCTTGATGATGTCAATGC
CAGAATAGAAGAAAATGAAGGCAAACTAGCAGATGTCAAGAGCAACCTTG
ATACCCTCGAGGAAGGCAGAAAAGAACTGGAAGAAAAAGAAACCTCCGGA
GACGAACGCATCCAAACTCTCGAGGATGAAGTGAAGGAAGCTAAACTCAA
GCTTGAAGAATCCAACACAAAGAAAGTTGAAGCTGCCCGAAAGAAAGTTG
TCATACAACGTGATCTTGACAAAACCAAATCGAAAGCCGAACAATTGGAA
GAGCGTGTTGAAAGCTTACAGGGAACCATTGATGAAACATCAAGCAGATT
GAGAGAATTAGAAGAAAGAGAAGGAGAATCCGCAGAAAAAGAGGAACAAA
ACGCCGAGAACTTGATTGTGCTTGAAGGTAGATTTAAGGATGCTGAAGTC
AGATATGAAGCAGCTGAACGTCAATGCAATGTTCTTTCTAATAATATCAA
GGAAGCAAAAAGTGAAATTGAATCATGGAACGCTAAGAGCaaagaaattg
aagatgaaatGGAAGCTATGGATGATTGCGATATTGATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058356-exon-scaffold_309-1491911889:926911..930392 | TCONS_00058356-exon-scaffold_309-1491911889:926911..930392 | Clytia hemisphaerica | exon |
| TCONS_00058356-exon-scaffold_309-1510915933:926911..930392 | TCONS_00058356-exon-scaffold_309-1510915933:926911..930392 | Clytia hemisphaerica | exon |
| TCONS_00058356-exon-scaffold_309-1575043694:926911..930392 | TCONS_00058356-exon-scaffold_309-1575043694:926911..930392 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:926911..930392 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000533 | Tropomyosin |
Blast
The following BLAST results are available for this feature:
|
