TCONS_00058265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058265
Unique NameTCONS_00058265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058265 ID=TCONS_00058265|Name=TCONS_00058265|organism=Clytia hemisphaerica|type=transcript|length=1036bp
AACACCAACCACGCCCTAACCAACAGCAGTTGAATCCAAATGATCCATTT
TTCCGACCACCACccaatcaccatggtaattcaCCAAGGTGGCCTGGATC
ACCACAACAACCCAATTGGTCTGGAAGTTATCAAGATCTGCATCAGATGA
ATTTCCAACACCATCCTAACCGTTTGAACTCGCCAAATATGACAGGACCT
CTTCCTCAAAATCACCAGTTTCACTCTACGTTTTAATCACCCTGGAGTTA
ACATTCCATCTCCGACTACAACACATCCTAATCGTTTCAGTAATACTGGA
TCCTTTTATCCTAACCAAATGAATGTCAACAGACCAGGAACTCCACCATT
ACAAATGAACCAACCACGTCTTTTCAATCAACAATCAAACCATGTTGGCT
TCCAACCTATAATCAATCAAAACCAAACGCAAAACCCACCCAACGAGTTT
CTCCAAAAGCCACCTGCAACCTTTACAAACCAACAACAATTTCAACCACT
TTTAGATAATGGATTCCCACCACGCCATCCTGGCCCATCCGGAGCTTACA
TTCCACCAGGCGCCCATTCAGGGTTCCTACCCCCACGCCAAGACATGGGC
GCACGACCACCCTTTATCCCTGGTCAAGCTCCAATCAATGAtaaagataa
acatttagaTGAGAAAGCTCTTCATAAAGAGAGAATGATGAAAATTGTTT
CTAATTGGATGCAAAACCGAACTTtcaatgaaaataatcaaactCAAGAT
TTATTGAAAATCCACGAATACAAGAAAGCTATGAAGTCCCTTTCATCTAA
AACCGATCAATTACGTCAGTTGAACGACAAAATGGCTGGTAATGTGCATT
GTGATCCTGACCAATGGTCTTCTCTATTGAAAGAAGttgtagactagtaa
actagtcgttgaaaacagacccatataccaaaaatcaagctccaaatgaa
aagaatctgaagaatcgaaggggtgaagttgcgtctcttttctgaatttc
aacgactagaagctacttccctcaaaaaacgttgtt
Run BLAST on NCBI

protein sequence of TCONS_00058265-protein

>TCONS_00058265-protein ID=TCONS_00058265-protein|Name=TCONS_00058265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MNVNRPGTPPLQMNQPRLFNQQSNHVGFQPIINQNQTQNPPNEFLQKPPA
TFTNQQQFQPLLDNGFPPRHPGPSGAYIPPGAHSGFLPPRQDMGARPPFI
PGQAPINDKDKHLDEKALHKERMMKIVSNWMQNRTFNENNQTQDLLKIHE
YKKAMKSLSSKTDQLRQLNDKMAGNVHCDPDQWSSLLKEVVD
Run BLAST on NCBI

transcript from alignment at scaffold_309:998628..1000592+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058265 ID=TCONS_00058265|Name=TCONS_00058265|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at scaffold_309:998628..1000592+ (Clytia hemisphaerica)
AACACCAACCACGCCCTAACCAACAGCAGTTGAATCCAAATGATCCATTT
TTCCGACCACCACccaatcaccatggtaattcaCCAAGGTGGCCTGGATC
ACCACAACAACCCAATTGGTCTGGAAGTTATCAAGATCTGCATCAGATGA
ATTTCCAACACCATCCTAACCGTTTGAACTCGCCAAATATGACAGGACCT
CTTCCTCAAAATCACCAGTTTCACTCTACGTTTTAATCACCCTGGAGTTA
ACATTCCATCTCCGACTACAACACATCCTAATCGTTTCAGTAATACTGGA
TCCTTTTATCCTAACCAAATGAATGTCAACAGACCAGGAACTCCACCATT
ACAAATGAACCAACCACGTCTTTTCAATCAACAATCAAACCATGTTGGCT
TCCAACCTATAATCAATCAAAACCAAACGCAAAACCCACCCAACGAGTTT
CTCCAAAAGCCACCTGCAACCTTTACAAACCAACAACAATTTCAACCACT
TTTAGATAATGGATTCCCACCACGCCATCCTGGCCCATCCGGAGCTTACA
TTCCACCAGGCGCCCATTCAGGGTTCCTACCCCCACGCCAAGACATGGGC
GCACGACCACCCTTTATCCCTGGTCAAGCTCCAATCAATGAtaaagataa
acatttagaTGAGAAAGCTCTTCATAAAGAGAGAATGATGAAAATTGTTT
CTAATTGGATGCAAAACCGAACTTtcaatgaaaataatcaaactCAAGAT
TTATTGAAAGTATGCgttatttttttttacatattttactGTTTAAAAAG
TTTGAATGTCCTCGACAAATCTTATAAACCTATTACTCTCTGGTACCTTA
TAAACTGGTGTTTGCAATAAACGAGGTGagtggaaaaattctcaaaactt
aataaacagggggggggggtgaaaatGCCTTgagttgaaaattttcgaac
AATTAATTAGTAGGGGGACGCTTCGGGGGACGCTTATTTGGTACCCGATA
GTAACCTATCAAGCTATTTCACCCTAAAAATATGTTATATtgtcaaaatt
tgccaaattctTATGGATCCAGAGGTATGACTGAACTTTTAGAGTTCGTT
CGAGCTCTTAAAACTTTATACAAAAAAAGGTCTCAgttcttttaaagttt
tgaaaagaGCAAATCTTTGATGCCGTTCGAGCTCTTAAAACTTTATACAA
AAAAAGGTCTCAgttcttttaaagttttgaaaagaGCAAATCTTTGATGC
CGTTCGAGCTCTTAAAACTTTATACAAAAAAAGGTCTCAgttcttttaaa
gttttgaaaagaGCAAATCTTTGATGCCGTTCGAGCTCTTAAAACTTTAT
ACAAAAAAAGGTCTCAgttcttttaaagttttgaaaagaGCAAATCTTTG
ATGCCGTTCGAGCTCTTAAAACTTTATACAAAAAAAGGTCTCAgttcttt
taaagttttgaaaagaGCAAATCTTTGATGCCGTTCGAGCTCTTAAAACT
TTATACAAAAAAAGGTCTCAgttcttttaaagttttgaaaagaGCAAATC
TTTGATGCCGTTCGAGCTCTTAAAACTTTATACAAAAAAAGGTCTCAgtt
cttttaaagttttgaaaagaGCAAACCTTTAATGCGACCAGAGAAAAATT
tatagtgtccgctaattgggaatactttctttttacaGATCCACGAATAC
AAGAAAGCTATGAAGTCCCTTTCATCTAAAACCGATCAATTACGTCAGTT
GAACGACAAAATGGCTGGTAATGTGCATTGTGATCCTGACCAATGGTCTT
CTCTATTGAAAGAAGttgtagactagtaaactagtcgttgaaaacagacc
catataccaaaaatcaagctccaaatgaaaagaatctgaagaatcgaagg
ggtgaagttgcgtctcttttctgaatttcaacgactagaagctacttccc
tcaaaaaacgttgtt

Coding sequence (CDS) from alignment at scaffold_309:998628..1000592+

>TCONS_00058265 ID=TCONS_00058265|Name=TCONS_00058265|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_309:998628..1000592+ (Clytia hemisphaerica)
ATGAATGTCAACAGACCAGGAACTCCACCATTACAAATGAACCAACCACG
TCTTTTCAATCAACAATCAAACCATGTTGGCTTCCAACCTATAATCAATC
AAAACCAAACGCAAAACCCACCCAACGAGTTTCTCCAAAAGCCACCTGCA
ACCTTTACAAACCAACAACAATTTCAACCACTTTTAGATAATGGATTCCC
ACCACGCCATCCTGGCCCATCCGGAGCTTACATTCCACCAGGCGCCCATT
CAGGGTTCCTACCCCCACGCCAAGACATGGGCGCACGACCACCCTTTATC
CCTGGTCAAGCTCCAATCAATGAtaaagataaacatttagaTGAGAAAGC
TCTTCATAAAGAGAGAATGATGAAAATTGTTTCTAATTGGATGCAAAACC
GAACTTtcaatgaaaataatcaaactCAAGATTTATTGAAAATCCACGAA
TACAAGAAAGCTATGAAGTCCCTTTCATCTAAAACCGATCAATTACGTCA
GTTGAACGACAAAATGGCTGGTAATGTGCATTGTGATCCTGACCAATGGT
CTTCTCTATTGAAAGAAGttgtagactagATGAATGTCAACAGACCAGGA
ACTCCACCATTACAAATGAACCAACCACGTCTTTTCAATCAACAATCAAA
CCATGTTGGCTTCCAACCTATAATCAATCAAAACCAAACGCAAAACCCAC
CCAACGAGTTTCTCCAAAAGCCACCTGCAACCTTTACAAACCAACAACAA
TTTCAACCACTTTTAGATAATGGATTCCCACCACGCCATCCTGGCCCATC
CGGAGCTTACATTCCACCAGGCGCCCATTCAGGGTTCCTACCCCCACGCC
AAGACATGGGCGCACGACCACCCTTTATCCCTGGTCAAGCTCCAATCAAT
GAtaaagataaacatttagaTGAGAAAGCTCTTCATAAAGAGAGAATGAT
GAAAATTGTTTCTAATTGGATGCAAAACCGAACTTtcaatgaaaataatc
aaactCAAGATTTATTGAAAATCCACGAATACAAGAAAGCTATGAAGTCC
CTTTCATCTAAAACCGATCAATTACGTCAGTTGAACGACAAAATGGCTGG
TAATGTGCATTGTGATCCTGACCAATGGTCTTCTCTATTGAAAGAAGttg
tagactag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036703XLOC_036703Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058265-proteinTCONS_00058265-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058265-exon-scaffold_309-1491911889:998628..999386TCONS_00058265-exon-scaffold_309-1491911889:998628..999386Clytia hemisphaericaexon
TCONS_00058265-exon-scaffold_309-1510915933:998628..999386TCONS_00058265-exon-scaffold_309-1510915933:998628..999386Clytia hemisphaericaexon
TCONS_00058265-exon-scaffold_309-1575043694:998628..999386TCONS_00058265-exon-scaffold_309-1575043694:998628..999386Clytia hemisphaericaexon
TCONS_00058265-exon-scaffold_309-1491911889:1000316..1000592TCONS_00058265-exon-scaffold_309-1491911889:1000316..1000592Clytia hemisphaericaexon
TCONS_00058265-exon-scaffold_309-1510915933:1000316..1000592TCONS_00058265-exon-scaffold_309-1510915933:1000316..1000592Clytia hemisphaericaexon
TCONS_00058265-exon-scaffold_309-1575043694:1000316..1000592TCONS_00058265-exon-scaffold_309-1575043694:1000316..1000592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:998628..1000592 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29515	1.41325	0.9836	0.64307	0.936357	0.729071	0.593968	0.50275	0.381636	0.378166	0.576242	0.480176	0.700685	0.650843	0.425085	0.992262	0.423542	0.912785	0.649754	0.394878	0.535141	0.952441	1.62327	1.73795	1.0329	1.76603	0.433757	0.309179	1.30184	2.61546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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