TCONS_00058363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058363
Unique NameTCONS_00058363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058363 ID=TCONS_00058363|Name=TCONS_00058363|organism=Clytia hemisphaerica|type=transcript|length=1009bp
CTCTTTTTccattgttatttttcattcacTTTGAAGTTTATtgattatat
tatttttatctACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAG
CTCCTGAATATGACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCT
CCGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGC
AGcTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAG
AGTCGACTGACTCGGTCACAACCAGGGAACCAGGAATTCGAAAACGTGGC
AAAGAAAATACGAAGGCGAAAAAAACATCAGCCTCAAacAACAATTCAAT
GAAACGCAAaagaaaagaggaaaagaaagagACTATTATGTGTACGGGAT
GTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTGGGTGCAATGT
GATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCG
GACGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTA
GAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTT
TACTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTT
TGCGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTC
TTGAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGT
CTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCT
AATCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAA
ATATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttc
aaatattttgttagctttttcctttgttgccatcaaaagataaaaatcaa
tttgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggttt
gagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:44..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058363 ID=TCONS_00058363|Name=TCONS_00058363|organism=Clytia hemisphaerica|type=transcript|length=3477bp|location=Sequence derived from alignment at scaffold_31:44..3520+ (Clytia hemisphaerica)
CTCTTTTTccattgttatttttcattcacTTTGAAGTTTATtgattatat
tatttttatctACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAG
CTCCTGAATATGACAGAAATGATGAAATGGACATTCTCCATAATAAGGCT
GCGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGC
AGGTGagaaaatctttacaaatagaaattATCGTTATTTTTCTACGGTTC
tctttttctattgttatttttcGAAGTTTATtgattatattatttttatc
tACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATA
TGACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTG
AAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaa
atctttacaaatagaaattATCGTTATTTTTCTACGGTTCTCTTTTTcca
ttgttatttttcattcacTTTGAAGTTTATtgattatattatttttatct
ACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATAT
GACAGAAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACA
AGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatct
tttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattg
ttatttttcattcacTTTGAAGTTTATTGATTATATTATTCTTATCTACT
TAGATCAACATAAGAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGAC
AGAAATGTTGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGA
TGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctttt
acaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgtta
tttttcattcacTTTGAAGTTTATtgattatattatttttatctACTTAG
ATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGA
AATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGA
TGATGATTTGGAGAGTGGATTTGATGATACAGCAggtgagaaaaatttga
aaacaacaatTCTCCCGAGTAACAAACGTGTTGACTATAAATGGATAAAC
TTGAATTTcttgggtcatttattaaatttggttcattggatcaaaagtta
tcctaatttgaaaaaaaagttacttCAGGAAAGTactcaaaaacgttgaa
aatcgacctatcaaatttttattctgaaattttcagtagcgACAGCTTTT
GCACGAATAAGAGCATTACGTAGTAATTtagaaacataatttttttcaaa
cttgagcctagaaagggtttaaaatcttcatcaaaatcatttccaTTTGT
AAAAGGATTAAACTTTTTAGATCTCTTTTTAGAATATTCACctgaaagag
agaaacttttttgtggcgcaccagGTATATAATATCACTATATTGAAAAc
gatttcattttctttcagcTTCTATTGCACGCCCTATTAGGAAAGCCAAG
ATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGTAAGCTTTT
TTTTCATCCTATCAGATTCATGTCCCGTTTCAAgctatttttcttttcgc
atctTGAACTTTCAAAATGTTGTCAATTATGAATACTAACTATCAGAATT
TTCCTTTGAATGTAACAAAATGAATCCTTATTATTGTTattcttgttttt
attattattgtatTCAAAGATTCTATTGTATTACTTATCTTCGTTAGCCG
AATTGAGAAACCAGCCCATAGCAAACCCAAACCTCTGATAAGTTTTACAT
CTCTTTCAGGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAG
GCGAAAAAAACATCAGCCTCAAGTATGGTTATTTTCCCGTTATAAATGTC
CAGGGCCTAAAGTTACTCTTGAAATTGCCTTTTTGATTAACATAATTTTA
TATCTTAAACTACAGGTacatgaaattttattttcaaaactttttagatA
TAATCCCTATTTCTTTTCCAATTGAGTTTGCCTCTCATTTTGTATGCCAT
TTTGAGTGGTACAATATCGAATCTTTTGTATATATGACAGTCAAATCTAG
TATGGGAGTATTCCTCTGGCTCTGGGTCATTTATTATCACAATTGtaatt
ctcttttattttagacAACAATTCAATGAAACGCAAaagaaaagaggaaa
agaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAA
ACTGATGATAATAGGTATGAAGAGTCGTTATGTTCGATTTTTTAGATCAA
AAGCACTTCCTTTTTAAAGATTATACAAGGAAGACCTTTCTTGGAATTAA
AGCATACCGTTTTCTTGTGAAAATTTAGAAAGAAGATATTATAGAGAATG
ACTGGTAGCAGTAGTTTAACCTACTTTAAACACCATCAGTTTTTGCTTCT
CAATCTCAATTACTctaataatttaattttgaattttgcaaaaaattttc
aCCCAATACATTTTTATTCCGAAcccctgcttgttaatttttggaaaatt
ttatttgaaagttatTTTCCTTGCCCTAGTTATTCTGTATTAACCTGCTT
TTCTAAAATTCTCTCTGTAATACCTACTCCTGCGAAAGGAGAGGGGATCC
AGAGGCTTCATATATAATATCTATATCTAGTATCCACTGGTATTCGAAGA
TATTTCGAATGTCTGTTTTTCATGTTTGTTCGATGTCTTATCATATTTAT
TATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTG
TTCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAA
ATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAAT
AAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTA
TATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAA
TAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaa
aacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCA
CGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGA
GGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGG
TCCGgaagcttatttttcaaatattttgttagctttttcctttgttgcca
tcaaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtac
tcctcttgggattggtttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058363-exon-scaffold_31-1491911889:44..175TCONS_00058363-exon-scaffold_31-1491911889:44..175Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1510915933:44..175TCONS_00058363-exon-scaffold_31-1510915933:44..175Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1575043694:44..175TCONS_00058363-exon-scaffold_31-1575043694:44..175Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1491911889:416..430TCONS_00058363-exon-scaffold_31-1491911889:416..430Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1510915933:416..430TCONS_00058363-exon-scaffold_31-1510915933:416..430Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1575043694:416..430TCONS_00058363-exon-scaffold_31-1575043694:416..430Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1491911889:677..731TCONS_00058363-exon-scaffold_31-1491911889:677..731Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1510915933:677..731TCONS_00058363-exon-scaffold_31-1510915933:677..731Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1575043694:677..731TCONS_00058363-exon-scaffold_31-1575043694:677..731Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1491911889:1662..1733TCONS_00058363-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1510915933:1662..1733TCONS_00058363-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1575043694:1662..1733TCONS_00058363-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1491911889:2003..2065TCONS_00058363-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1510915933:2003..2065TCONS_00058363-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1575043694:2003..2065TCONS_00058363-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1491911889:2358..2457TCONS_00058363-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1510915933:2358..2457TCONS_00058363-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1575043694:2358..2457TCONS_00058363-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1491911889:2949..3520TCONS_00058363-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1510915933:2949..3520TCONS_00058363-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058363-exon-scaffold_31-1575043694:2949..3520TCONS_00058363-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:44..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.17695	1.71741	3.40788	4.45254	0.409488	0.278415	1.52744	0	0.410556	0	0.218174	0.692037	0.204454	1.12104	0.853215	0.449615	0.468048	1.05065	1.24606	0	2.28624	3.14991	0.464554	0.361898	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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