TCONS_00058388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058388
Unique NameTCONS_00058388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058388 ID=TCONS_00058388|Name=TCONS_00058388|organism=Clytia hemisphaerica|type=transcript|length=730bp
GATCGGCCACGGTGAATTTCATGGCGGTTATTTTGGCGTCATCATCTTGG
TTAGCACGTTTGATACGAAGTTGTTCGAGtttgaaattccactctttCGC
TTCCTGGAAATAGGCTTTAATTGAGTTTAGGGTGATCGTTAATAGTGCGA
CAAATTTCTCATCCTGAGTTTCACTATCCATCAGATGTTTACGGTGTTGT
CGAAGAGTGTTGCGATGTTCAACCAATTCGTTGACGGCAATGTCAACATC
TTTGGTCGCACAGGAATGGACGGGTGTTTCGTCTATGATGTCATTGACAT
GTTCAATTGTCAATTCGATTTGAGATTGAGCTTCCATCGTTGAGTGATGT
TGCTTGGTTGATTGATTCGGTTCAGACGGCTTTGAAGGCTGGTCTGAGTT
GATCCGAGTTGAGGGTGAGGATGATTGATCCTGTTGATATGGAACTTTCC
TTCCTGTCAAATTATACGTCCGATAGTCGAAGCGAGAAATGTTCCGTCGG
GGTCGTTCTGACATGCGATTGGGATGGTAAAGGTGTCCGTTTGAATGTAG
AGGCAGGCAGGCTGGACACAGATTAAGGGTCGGTTTGGAACACGCACACA
ATTGAAGTTGATTGATGTATTGTGTTGACAGAGTTCAaactaaaaagtac
aaaatgaaaatgataaatattttgaactaaaatgaaaaatccTTGACTAA
ATGACAAAGTATCCTAGATATCCTCAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00058388-protein

>TCONS_00058388-protein ID=TCONS_00058388-protein|Name=TCONS_00058388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MSERPRRNISRFDYRTYNLTGRKVPYQQDQSSSPSTRINSDQPSKPSEPN
QSTKQHHSTMEAQSQIELTIEHVNDIIDETPVHSCATKDVDIAVNELVEH
RNTLRQHRKHLMDSETQDEKFVALLTITLNSIKAYFQEAKEWNFKLEQLR
IKRANQDDDAKITAMKFTVAD
Run BLAST on NCBI

transcript from alignment at scaffold_31:50296..51025

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058388 ID=TCONS_00058388|Name=TCONS_00058388|organism=Clytia hemisphaerica|type=transcript|length=730bp|location=Sequence derived from alignment at scaffold_31:50296..51025 (Clytia hemisphaerica)
ATTTTGAGGATATCTAGGATACTTTGTCATTTAGTCAAggatttttcatt
ttagttcaaaatatttatcattttcattttgtactttttagttTGAACTC
TGTCAACACAATACATCAATCAACTTCAATTGTGTGCGTGTTCCAAACCG
ACCCTTAATCTGTGTCCAGCCTGCCTGCCTCTACATTCAAACGGACACCT
TTACCATCCCAATCGCATGTCAGAACGACCCCGACGGAACATTTCTCGCT
TCGACTATCGGACGTATAATTTGACAGGAAGGAAAGTTCCATATCAACAG
GATCAATCATCCTCACCCTCAACTCGGATCAACTCAGACCAGCCTTCAAA
GCCGTCTGAACCGAATCAATCAACCAAGCAACATCACTCAACGATGGAAG
CTCAATCTCAAATCGAATTGACAATTGAACATGTCAATGACATCATAGAC
GAAACACCCGTCCATTCCTGTGCGACCAAAGATGTTGACATTGCCGTCAA
CGAATTGGTTGAACATCGCAACACTCTTCGACAACACCGTAAACATCTGA
TGGATAGTGAAACTCAGGATGAGAAATTTGTCGCACTATTAACGATCACC
CTAAACTCAATTAAAGCCTATTTCCAGGAAGCGaaagagtggaatttcaa
aCTCGAACAACTTCGTATCAAACGTGCTAACCAAGATGATGACGCCAAAA
TAACCGCCATGAAATTCACCGTGGCCGATC

Coding sequence (CDS) from alignment at scaffold_31:50296..51025

>TCONS_00058388 ID=TCONS_00058388|Name=TCONS_00058388|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_31:50296..51025 (Clytia hemisphaerica)
ATGTCAGAACGACCCCGACGGAACATTTCTCGCTTCGACTATCGGACGTA
TAATTTGACAGGAAGGAAAGTTCCATATCAACAGGATCAATCATCCTCAC
CCTCAACTCGGATCAACTCAGACCAGCCTTCAAAGCCGTCTGAACCGAAT
CAATCAACCAAGCAACATCACTCAACGATGGAAGCTCAATCTCAAATCGA
ATTGACAATTGAACATGTCAATGACATCATAGACGAAACACCCGTCCATT
CCTGTGCGACCAAAGATGTTGACATTGCCGTCAACGAATTGGTTGAACAT
CGCAACACTCTTCGACAACACCGTAAACATCTGATGGATAGTGAAACTCA
GGATGAGAAATTTGTCGCACTATTAACGATCACCCTAAACTCAATTAAAG
CCTATTTCCAGGAAGCGaaagagtggaatttcaaaCTCGAACAACTTCGT
ATCAAACGTGCTAACCAAGATGATGACGCCAAAATAACCGCCATGAAATT
CACCGTGGCCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036778XLOC_036778Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058388-proteinTCONS_00058388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058388-exon-scaffold_31-1491911889:50296..51025TCONS_00058388-exon-scaffold_31-1491911889:50296..51025Clytia hemisphaericaexon
TCONS_00058388-exon-scaffold_31-1510915933:50296..51025TCONS_00058388-exon-scaffold_31-1510915933:50296..51025Clytia hemisphaericaexon
TCONS_00058388-exon-scaffold_31-1575043694:50296..51025TCONS_00058388-exon-scaffold_31-1575043694:50296..51025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:50296..51025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.822742	0.889652	0.897677	1.13147	2.83046	1.59261	1.22566	1.14745	0.745976	1.32321	0.532014	0.634216	0.392791	0.783712	0.296035	0.539441	0.460071	0.495079	0.144774	0.267218	0	0.481706	0.0780769	0.283933	0.804222	0.463971	0.402815	0.398598	0.302323	0.0770047
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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