TCONS_00058395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058395
Unique NameTCONS_00058395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058395 ID=TCONS_00058395|Name=TCONS_00058395|organism=Clytia hemisphaerica|type=transcript|length=1811bp
tgtacgCCTTAAGGATGCAATTTTAATGCACAATAATTGAATGTTCCTAG
TACTTGACATTCCTAGTATTTCTTTTTAGCTATGTTATCAAAACAACCTA
ATGTAAATGAAATTTGGTTTTCAGATTTCATATAATCCTCCCTGCATAAA
TAAGCTAACACTTTGAGATAAACTTTTTTACCCCCACTTTAACTCCTACT
TTTATAAACCATTTCGACTTTGGACCTTTGGAATTAATATATAATGAATG
TCAAGTCCTAGtgtacattttcaatttttgtagtAAAGCATTAGCTATTA
AAAttcattcgctttaagtgtgcactgatctttgttttcccTGCCATTTT
TCGACCGTTACTAGAACACTatattttctaagaaaaataattcgaaaaat
ttagaaaatgaagaagaattaCTTCAAAGCCTCCTGATTTCAGAGGTACA
ATTATTTTGGCATAGCTGAAATTAAAAGGCTTTTAAGTatctttgtacca
aaaattaGGTTTTTAGCACTTAATGACAAGAAAACTAAGATTAGTGCTCA
CATAAGGGAAAGGACATTAGTAATAAACAAAGCAGCAATCCAAAATTGGA
CATGACTTCATGGCTTATTGAAACGAATATTGGTAGAAAAGATCGCAATA
AGACGATAAATATAAATTATCTTGATGTTGACTGGCCACTTATATCGCAA
TAAGACGATGCTTATCAAATTACAGCTAGCTGGAGTCGGGACGGATGGCA
GACTACATCGCAATAAGAGGATAGATATAAAAGTATATGTTGCCATACTA
TAAATCGCAATAAGACGATACGTATTAAAAATAAACTGCCAGCTAGCCGG
AGTTGGACATCACCAAATGCTAAAGTCTGAACATGGGTGGTAGGGAGGCA
GACTATAAATCGCAATAAGACGATTGATTTTAAATTATCTGTATGTTGGC
AGACCATACATCGCAATAAGACGATACATATTAAAAGTGACAGCTAGACG
GATTCGGACATCAAATTTTGGATACCATCCCTCTATTTGACttcaggttt
aaaaaagtagTTGTAAGAAGTAAGAAACGGTAACTCTTAGTTATTAcatg
ttttacttttttccgTATATCCTTAAATTTTCtcgcaaaataaaaaacaa
atgcaaTAAATGTCACTGGTTTAAGGTCGTTGCAGTTTCTAATCTTTCTT
TGAACCCACTTTCCTTTGAGATTATATATTACGTTTTAAAAGTTAGCCTG
ATTTCtgctttgtttttttctgattcaaTTAGATTCAATATGATGTCCTG
AGAAAATCGAAACTGTTTCATCTGNCTgctttgttttttctgattcaaTT
AGATTCAATATGATGGCCGGAGAAAATCGAAACTGTTTCATCGACAACCA
ACGATTGCACCCAAGAATTATGAAATAGatctAATATATTTGTATATAAC
AGTAAAAGATGTCAACGCCACAGGTTACCGACCTTCAGATGCTGTCTCTC
ATTTCGCAGTTGCAGACAATAATCAACGGTGCTGCCGAACAGTTAAACAT
GCTGCAGAGCAGGATCTCTGGATTTGaTGGGACTGGAAAATCACTGGATT
CAATTCCACCGGGCGTTCCTGTCAGTCAAATCACTTTCGTTCGACAACTA
TTTGTCCACCGGGCACAATCCGTGGCCAACGCCGACACCAGCGATGCCGG
CCTTGGCTATTGGGTCAACGCCGATGGGATGTTGCCCTCACGTCCAAAAC
CCGAAAGACGGTTTTACAACAACTATCGTGGGCGTGGGCGTGGCAGTCGT
GGTGATGGGCG
Run BLAST on NCBI

protein sequence of TCONS_00058395-protein

>TCONS_00058395-protein ID=TCONS_00058395-protein|Name=TCONS_00058395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MSTPQVTDLQMLSLISQLQTIINGAAEQLNMLQSRISGFDGTGKSLDSIP
PGVPVSQITFVRQLFVHRAQSVANADTSDAGLGYWVNADGMLPSRPKPER
RFYNNYRGRGRGSRGDG
Run BLAST on NCBI

transcript from alignment at scaffold_310:147049..150328+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058395 ID=TCONS_00058395|Name=TCONS_00058395|organism=Clytia hemisphaerica|type=transcript|length=3280bp|location=Sequence derived from alignment at scaffold_310:147049..150328+ (Clytia hemisphaerica)
tgtacgCCTTAAGGATGCAATTTTAATGCACAATAATTGAATGTTCCTAG
TACTTGACATTCCTAGTATTTCTTTTTAGCTATGTTATCAAAACAACCTA
ATGTAAATGAAATTTGGTTTTCAGATTTCATATAATCCTCCCTGCATAAA
TAAGCTAACACTTTGAGATAAACTTTTTTACCCCCACTTTAACTCCTACT
TTTATAAACCATTTCGACTTTGGACCTTTGGAATTAATATATAATGAATG
TCAAGTCCTAGtgtacattttcaatttttgtagtAAAGCATTAGCTATTA
AAAttcattcgctttaagtgtgcactgatctttgttttcccTGCCATTTT
TCGACCGTTACTAGAACACTatattttctaagaaaaataattcgaaaaat
ttagaaaatgaagaagaattaCTTCAAAGCCTCCTGATTTCAGAGGTACA
ATTATTTTGGCATAGCTGAAATTAAAAGGCTTTTAAGTatctttgtacca
aaaattaGGTTTTTAGCACTTAATGACAAGAAAACTAAGATTAGTGCTCA
CATAAGGGAAAGGACATTAGTAATAAACAAAGCAGCAATCCAAAATTGGA
CATGACTTCATGGCTTATTGAAACGAATATTGGTAGAAAAGATCGCAATA
AGACGATAAATATAAATTATCTTGATGTTGACTGGCCACTTATATCGCAA
TAAGACGATGCTTATCAAATTACAGCTAGCTGGAGTCGGGACGGATGGCA
GACTACATCGCAATAAGAGGATAGATATAAAAGTATATGTTGCCATACTA
TAAATCGCAATAAGACGATACGTATTAAAAATAAACTGCCAGCTAGCCGG
AGTTGGACATCACCAAATGCTAAAGTCTGAACATGGGTGGTAGGGAGGCA
GACTATAAATCGCAATAAGACGATTGATTTTAAATTATCTGTATGTTGGC
AGACCATACATCGCAATAAGACGATACATATTAAAAGTGACAGCTAGACG
GATTCGGACATCAAATTTTGGATACCATCCCTCTATTTGACttcaggttt
aaaaaagtagTTGTAAGAAGTAAGAAACGGTAACTCTTAGTTATTAcatg
ttttacttttttccgTATATCCTTAAATTTTCtcgcaaaataaaaaacaa
atgcaaTAAATGTCACTGGTTTAAGGTCGTTGCAGTTTCTAATCTTTCTT
TGAACCCACTTTCCTTTGAGATTATATATTACGTTTTAAAAGTTAGCCTG
ATTTCtgctttgtttttttctgattcaaTTAGATTCAATATGATGTCCTG
AGAAAATCGAAACTGTTTCATCTGNCTgctttgttttttctgattcaaTT
AGATTCAATATGATGGCCGGAGAAAATCGAAACTGTTTCATCGACAACCA
ACGATTGCACCCAAGAATTATGAAATAGGTAATCCCTTGATATTGTTTGT
AATCTTTTCTACAGTTCCTTACCCTGAtgtttcatattttgaaaactatt
cagtttaaaaatctatttttttcattattcagGTGACTGGTATCGGAGAA
TTTAAAAGACAAGACAAGTATATGTAGTGCAGTTTATAAGCATTTCAATT
TATTAGCTAAGAAtagtttgatttcattttttctaataAAGTTCCACCTG
ATATGTATTACTTGTTATCTTCGATATTCCCGGGAAATAGATATCTATCT
TATCTTTCAAACAGAATGTTTCATTgagttttctgttttctatactattt
aaaaaaactgatttaTTATTGAGACCATCATTTTAATAGAGACTATTACT
TTTTTTAACTGTTCCGAAAATGTCGAAAGATTTACTTTATTTAAAGAGTA
AATTACGCTGGCGGATACAATACAGGCCAATATATCTAATCTTAATATAA
TGCTAAAACTCAGCATATGTGTTATTGGAGCTGATTTGAGTAGACGTTGG
ACGTGTAGGAAGTCAGAAGCAACTTACAGATTCACTCCCAGCTTTATAAT
AAAAGAAgttctgttttcttttcttttttcagatctAATATATTTGTATA
TAACAGTAAAAGATGTCAACGCCACAGGTTACCGACCTTCAGATGCTGTC
TCTCATTTCGCAGTTGCAGACAATAATCAACGGTGGTATATAAATATTCT
ATATTCGGTTGATTTGTCAGCAATATTCATATATAGGCGCTGCCACCCAA
ATCTGGGTGAATATAGTtagacagaaattcttatttgttCAAATATATAT
CAAAGGTTGTGTTTGATGCTAACAGTTCATGAATTTTTATTAAGATTTTC
GAACTTCATAATATCCCCTACTGATATTGAATTATTGCCTTGACGTTTTC
ATTCTACTNTCTTAATATCCCCTACTGATATTGAATTATTCCCTTGACGT
TTTCATTCTACTTATTGTCCTCCCTTCTCACCAATATCGTTTGACATATT
ACTCAAACCCAACAatgcattgataatacaaaaattACCCAGAGGGATCA
TCAGCTTTTCGGCTATTACTGAAAATGATTCCTTTTTATATTCTTTAGCT
GCCGAACAGTTAAACATGCTGCAGAGCAGGATCTCTGGATTTGGTAGGTG
TATTCAATTATAACTGGAAATCTTTAGGATTGTACATTGTTATATGTTTG
TTATTACTTTTAATAATTGCGATCGCCCAAATCTAATTGAACATACATAC
CGTCGTTTAAGGTTACTTTGATAAGTGAGGAAGACTTTGTAGATTACCCA
ACAcatatgaaaaagaaaacagaaattgtaagttttttaatcttttttca
gaTGGGACTGGAAAATCACTGGATTCAATTCCACCGGGCGTTCCTGTCAG
TCAAATCAGTAAGTGAATCTCTTacctttaaatttgaaaatacaaTTATG
TAAGTgtgatttgaaaatgtttttgataaatcACCCAAAACCAATTTTAT
CAATCCTGTTATCGAATTTATATGCACTTATGACTCCATTTATCTGATCA
TACAGGTCACAAacgatttgtttattttggttgttttcaagACATATTAC
TTATGTTTCTTTCATTGTTTCATACATTACCCCTTTAAATTTGTCTTTTC
AGCTTTCGTTCGACAACTATTTGTCCACCGGGCACAATCCGTGGCCAACG
CCGACACCAGCGATGCCGGCCTTGGCTATTGGGTCAACGCCGATGGGATG
TTGCCCTCACGTCCAAAACCCGAAAGACGGTTTTACAACAACTATCGTGG
GCGTGGGCGTGGCAGTCGTGGTGATGGGCG

Coding sequence (CDS) from alignment at scaffold_310:147049..150328+

>TCONS_00058395 ID=TCONS_00058395|Name=TCONS_00058395|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_310:147049..150328+ (Clytia hemisphaerica)
ATGTCAACGCCACAGGTTACCGACCTTCAGATGCTGTCTCTCATTTCGCA
GTTGCAGACAATAATCAACGGTGCTGCCGAACAGTTAAACATGCTGCAGA
GCAGGATCTCTGGATTTGaTGGGACTGGAAAATCACTGGATTCAATTCCA
CCGGGCGTTCCTGTCAGTCAAATCACTTTCGTTCGACAACTATTTGTCCA
CCGGGCACAATCCGTGGCCAACGCCGACACCAGCGATGCCGGCCTTGGCT
ATTGGGTCAACGCCGATGGGATGTTGCCCTCACGTCCAAAACCCGAAAGA
CGGTTTTACAACAACTATCGTGGGCGTGGGCGTGGCAGTCGTGGTGATGG
GATGTCAACGCCACAGGTTACCGACCTTCAGATGCTGTCTCTCATTTCGC
AGTTGCAGACAATAATCAACGGTGCTGCCGAACAGTTAAACATGCTGCAG
AGCAGGATCTCTGGATTTGaTGGGACTGGAAAATCACTGGATTCAATTCC
ACCGGGCGTTCCTGTCAGTCAAATCACTTTCGTTCGACAACTATTTGTCC
ACCGGGCACAATCCGTGGCCAACGCCGACACCAGCGATGCCGGCCTTGGC
TATTGGGTCAACGCCGATGGGATGTTGCCCTCACGTCCAAAACCCGAAAG
ACGGTTTTACAACAACTATCGTGGGCGTGGGCGTGGCAGTCGTGGTGATG
GGATGTCAACGCCACAGGTTACCGACCTTCAGATGCTGTCTCTCATTTCG
CAGTTGCAGACAATAATCAACGGTGCTGCCGAACAGTTAAACATGCTGCA
GAGCAGGATCTCTGGATTTGaTGGGACTGGAAAATCACTGGATTCAATTC
CACCGGGCGTTCCTGTCAGTCAAATCACTTTCGTTCGACAACTATTTGTC
CACCGGGCACAATCCGTGGCCAACGCCGACACCAGCGATGCCGGCCTTGG
CTATTGGGTCAACGCCGATGGGATGTTGCCCTCACGTCCAAAACCCGAAA
GACGGTTTTACAACAACTATCGTGGGCGTGGGCGTGGCAGTCGTGGTGAT
GGGATGTCAACGCCACAGGTTACCGACCTTCAGATGCTGTCTCTCATTTC
GCAGTTGCAGACAATAATCAACGGTGCTGCCGAACAGTTAAACATGCTGC
AGAGCAGGATCTCTGGATTTGaTGGGACTGGAAAATCACTGGATTCAATT
CCACCGGGCGTTCCTGTCAGTCAAATCACTTTCGTTCGACAACTATTTGT
CCACCGGGCACAATCCGTGGCCAACGCCGACACCAGCGATGCCGGCCTTG
GCTATTGGGTCAACGCCGATGGGATGTTGCCCTCACGTCCAAAACCCGAA
AGACGGTTTTACAACAACTATCGTGGGCGTGGGCGTGGCAGTCGTGGTGA
TGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036785XLOC_036785Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058395-exon-scaffold_310-1491911889:147049..148476TCONS_00058395-exon-scaffold_310-1491911889:147049..148476Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1510915933:147049..148476TCONS_00058395-exon-scaffold_310-1510915933:147049..148476Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1575043694:147049..148476TCONS_00058395-exon-scaffold_310-1575043694:147049..148476Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1491911889:149081..149183TCONS_00058395-exon-scaffold_310-1491911889:149081..149183Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1510915933:149081..149183TCONS_00058395-exon-scaffold_310-1510915933:149081..149183Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1575043694:149081..149183TCONS_00058395-exon-scaffold_310-1575043694:149081..149183Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1491911889:149597..149641TCONS_00058395-exon-scaffold_310-1491911889:149597..149641Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1510915933:149597..149641TCONS_00058395-exon-scaffold_310-1510915933:149597..149641Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1575043694:149597..149641TCONS_00058395-exon-scaffold_310-1575043694:149597..149641Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1491911889:149850..149906TCONS_00058395-exon-scaffold_310-1491911889:149850..149906Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1510915933:149850..149906TCONS_00058395-exon-scaffold_310-1510915933:149850..149906Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1575043694:149850..149906TCONS_00058395-exon-scaffold_310-1575043694:149850..149906Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1491911889:150151..150328TCONS_00058395-exon-scaffold_310-1491911889:150151..150328Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1510915933:150151..150328TCONS_00058395-exon-scaffold_310-1510915933:150151..150328Clytia hemisphaericaexon
TCONS_00058395-exon-scaffold_310-1575043694:150151..150328TCONS_00058395-exon-scaffold_310-1575043694:150151..150328Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058395-proteinTCONS_00058395-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:147049..150328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95317	2.41147	1.08177	0.824508	2.72308	2.19368	3.335	4.58469	3.6255	3.10283	4.70282	3.96719	3.84475	5.37514	3.10712	3.28838	3.11989	4.34937	4.18082	2.7587	4.97306	5.3284	2.79498	3.65831	8.65658	8.15877	1.43921	1.37207	0.699819	0.373494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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