TCONS_00058397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058397
Unique NameTCONS_00058397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058397 ID=TCONS_00058397|Name=TCONS_00058397|organism=Clytia hemisphaerica|type=transcript|length=666bp
ATCAGACTTTGGTGCTCGGTTGGAGAAGATTGAGTTCTCAATCCGTGGGG
TGTGAGGGTTCTCTTCAGAATAAATATGATTAAATGTAATTGGAATTTTC
TTTTATACTTTAGGGCTGGGATTCAATTACGTTGCTGATTCTGCAATTGT
GATGAGTGGATGTCAACGGACTCCATTTACCAAAGCTCTGAACTTTATAG
GAATTGGAACAACAAGCTCCACCTCTTACTATTCTGGCCTCCAGTCCTTT
GTTGTTCCGACAATTCAGCAAGAATATGACGAAGAAATATCAGGTACTAT
CAAAGAAATCAAGGATATAGGAACTGATACTGTTGTAGGTGGTGATTGTC
AAATGGACTTTCCTGGATATTCCGCTACAAAAGGTACTTACAGCTTTTGT
GATACTGTATCTGGTAGATACTTGGTGCATATTTTGGTGACAAAAGAGAG
GTCaatttaaaatctacaaatttagaaGCACATTTGTTCATGAAAGGTAT
CGTTGAACTGAAAAATCTTCTTGGAAAGTTGTTGACCGAAGTGGTGACGG
ATGACCATTCTACTATCAAATCATTATTCAAAAAAGACCCAAGATTGTTA
GCACTTCTTCAATCGCTTGATGTGTGGCACAAggcaacaaaaatttctaa
gaaaattgGAGAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00058397-protein

>TCONS_00058397-protein ID=TCONS_00058397-protein|Name=TCONS_00058397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MSGCQRTPFTKALNFIGIGTTSSTSYYSGLQSFVVPTIQQEYDEEISGTI
KEIKDIGTDTVVGGDCQMDFPGYSATKGTYSFCDTVSGRYLVHILVTKER
SI
Run BLAST on NCBI

transcript from alignment at scaffold_310:192141..196371+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058397 ID=TCONS_00058397|Name=TCONS_00058397|organism=Clytia hemisphaerica|type=transcript|length=4231bp|location=Sequence derived from alignment at scaffold_310:192141..196371+ (Clytia hemisphaerica)
ATCAGACTTTGGTGCTCGGTTGGAGAAGATTGAGTTCTCAATCCGTGGGG
TGTGAGGGTTCTCTTCAGAATAAATATGATTAAATGTAATTGGAATTTTC
TTTTATACTTTAGGGCTGGGATTCAATTACGTTGCTGATTCTGCAATTGT
GATGAGTGGATGTCAACGGACTCCATTTACCAAAGCTCTGAACTTTATAG
GTATGTGATTAAGCTTTGAAAACCAATAGGAATGAATATTAACTAGCTAA
ATTATTATAAAGTATGCCACATACTATATTccattacattatattatatt
ttaatattacattatatttaaTACAGGAATTGGAACAACAAGCTCCACCT
CTTACTATTCTGGCCTCCAGTCCTTTGTTGTTCCGACAATTCAGCAAGAA
TATGACGAAGAAATATCAGGTACTATCAAAGAAATCAAGGATATAGGAAC
TGATACTGTTGTAGGTGGTGATTGTCAAATGGACTTTCCTGGATATTCCG
CTACAAAAGGTTATTACAAGTCAATTTTTGTCATTCAACAAGAATAGGAA
CAACAAATTCCACTTCGTATTATTACGCCCATTACTGTATTGGGCCCCAG
ctaacaaaaaagattttctgcaGGTTATATACAAAATGCATTGTATGTTA
ACTTCAATTTATCAAAATGTATCTATCttcatttgtttttcaattaGGTA
CTTACAGCTTTTGTGATACTGTATCTGGTAGATACTTGGTGCATATTTTG
GTGACAAAAGAGAGGTATGTAATAGATATAAACTGGTGATAAAAAACCAA
GTCTTACCTTATTTGTAACCCCagaatttataacaaaaatacaaattttc
acCTCTGCTNGCCCCAGctaacaaaaaagattttctgcaGGTTATATACA
AAATGCATTGTATGTTAACTTCAATTTATCAAAATGTAtctatcttcatt
tttttttcaattaggtACTTACAGCTTTTGTGATACTGTACcgggtgtgt
caaaaaaaacgcgcctatttttcgatttttgacgtacaaatttctatcaa
acaaagacaaatgaaattttcagggaagatttgaaatttaattttttacc
tttgttgaaaattatacatttcTATGTTTATTCAAAATGACTTTATGATA
ATTCCGCTGACTtgtgtcaaattttcattgTTCACGGATTTTCATAGTTA
AATTTTTCCACATAAACAAGAAACTAAAGTACGCTTCGTTTTTACTCTCT
TATTTTGTTTCGCTAccattaaaacattaaaatggcatcattttttcatt
tcataggtTAAGTTTTGTTCCAAGGTCAATATTTGATAGATTCTAGCTAG
TTCCAGCCAAGCCATTTCTTAACGTCAATTGCAACGacaaaaaaaagact
ttcaaatCGTTAATGGTGCAGAAATGAACCGATGTTATTACCTTTTGTAC
AGCAAAATCCTTAGGTTTTCAGTTAAAGTGTTTTGCAAAAAGTTAAAGAA
GCAGAACAGAGCTTGTGGAATATAATATGATTGATTAAATAATGGAAATG
AAACGAATTGATGAAATTTGGTTTTGCTAAGAAATGCTTTACATTGCCTT
GAACACCTTGAGATGTTACGATAACACTGCAAAAAGATGCCCTGCACCcc
tttaatttcaaaacaagataAGTTTGACAATAAAGAATTTTGGCTTAGTA
GTAATATTCCCTTTCTACATCTAGCTTAAACTTAAATTACACTTTAAAAT
GGTTTTTACAGCTGATAGGACAGCTAGAATGTAAAGGTTTGACGTCTTCT
TTGACGTCAATTGATTGCTTCTGTGAACAACACAAAAATTAGTGATCTTG
CGAGAATATTTATAACTTTGAATTCATTTGAGGTAACTCTGCCAAAGTTT
GAGAAATGTTTGGAATTAAAATGTACAAtactcacaaaaaaattcaagca
gCTCAACTGAATAGAAAAATGTACgtcaaagattttaaaatagGGGCGTT
TTTTTTGANCAACTGAATAGAAAAATGTACgtcaaagattttaaaatagg
ggcgttttttttgacacacccgGTACCTGGTAGATACTTGGTGCATATTT
TGGTGACAAAAGAGAGGTATGTAAtagcaacggattagaataggtggatt
aacttctctcgttgctcccaagagagatccattgtcttctcattgttaca
agaaaaatctgtaaatgactctgcgcacNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcctcgtttagttttttcattgtttttataagaacaattttccaatt
tatacagtttcgaaaacgaatttgtcctatgattcgatcaattttgatga
ttttgccaaTGTTTTAAATCCTGCACTTAAGTTTTAGCATCAACAAACGC
TAGAccagttttaatgtaaatttttggacctacctccgggtgccccggtg
gaggttctataaattaacccatgtccgttcgtctgttcgtccgtccgtcc
gtccgtctgttaccagcttttctcaggatNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactt
atcaagttttaattgctagcaaactcgtaaaaaagtttgataacctaacg
aggagtgttttctatgagttcttaatccacctattctaatccgttggtaA
TAGATATAAACTGGTGATAAAAAACCAAGTCTTACCTTATTTGTAACCCC
agaatttataacaaaaatacaaattttcacCTCTGCTGTACTGTGATGTG
ATgtgtaaaaatataattttaagtTTGTTAGAGAAGACTCAGGTAAAAGT
AATGCACAGTGGTTCCAACATTACTCTAGATTCCACACTGATTTGTTTTG
TTCCTTTGTGCCTTACTTTTCAACATAACAATGAAACTGCTTTAATGTGG
cgataataataacaatatcaACAATCAATTTTCGCAGGTCaatttaaaat
ctacaaatttagaaGCACATTTGTTCATGAAAGGTATCGTTGAACTGAAA
AATCTTCTTGGAAAGTTGTTGACCGAAGTGGTGACGGATGACCATTCTAC
TATCAAATCATTATTCAGtaattaaaatttatttgaaatgaAAGGTTTCA
CCTAAACTAGAGaatactcttttgtgcttaattgaaGGGGATCATTTTGC
ATCTTTGGAAAACAATCACCCTTATAGCATTTTATTCCACCCCTACAATT
AAGTTCAAGATTAttgatttgtttcattttttacaagctttttcatgatt
ttttatttatcaaaTAGAAAGATACCTCAATTTCTTACATCATAGAAAAA
GACCCAAGATTGTTAGCACTTCTTCAATCGCTTGATGTGTGGCACAAggc
aacaaaaatttctaagaaaattgGAGAGGTA

Coding sequence (CDS) from alignment at scaffold_310:192141..196371+

>TCONS_00058397 ID=TCONS_00058397|Name=TCONS_00058397|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_310:192141..196371+ (Clytia hemisphaerica)
ATGAGTGGATGTCAACGGACTCCATTTACCAAAGCTCTGAACTTTATAGG
AATTGGAACAACAAGCTCCACCTCTTACTATTCTGGCCTCCAGTCCTTTG
TTGTTCCGACAATTCAGCAAGAATATGACGAAGAAATATCAGGTACTATC
AAAGAAATCAAGGATATAGGAACTGATACTGTTGTAGGTGGTGATTGTCA
AATGGACTTTCCTGGATATTCCGCTACAAAAGGTACTTACAGCTTTTGTG
ATACTGTATCTGGTAGATACTTGGTGCATATTTTGGTGACAAAAGAGAGG
TCaatttaaATGAGTGGATGTCAACGGACTCCATTTACCAAAGCTCTGAA
CTTTATAGGAATTGGAACAACAAGCTCCACCTCTTACTATTCTGGCCTCC
AGTCCTTTGTTGTTCCGACAATTCAGCAAGAATATGACGAAGAAATATCA
GGTACTATCAAAGAAATCAAGGATATAGGAACTGATACTGTTGTAGGTGG
TGATTGTCAAATGGACTTTCCTGGATATTCCGCTACAAAAGGTACTTACA
GCTTTTGTGATACTGTATCTGGTAGATACTTGGTGCATATTTTGGTGACA
AAAGAGAGGTCaatttaaATGAGTGGATGTCAACGGACTCCATTTACCAA
AGCTCTGAACTTTATAGGAATTGGAACAACAAGCTCCACCTCTTACTATT
CTGGCCTCCAGTCCTTTGTTGTTCCGACAATTCAGCAAGAATATGACGAA
GAAATATCAGGTACTATCAAAGAAATCAAGGATATAGGAACTGATACTGT
TGTAGGTGGTGATTGTCAAATGGACTTTCCTGGATATTCCGCTACAAAAG
GTACTTACAGCTTTTGTGATACTGTATCTGGTAGATACTTGGTGCATATT
TTGGTGACAAAAGAGAGGTCaatttaaATGAGTGGATGTCAACGGACTCC
ATTTACCAAAGCTCTGAACTTTATAGGAATTGGAACAACAAGCTCCACCT
CTTACTATTCTGGCCTCCAGTCCTTTGTTGTTCCGACAATTCAGCAAGAA
TATGACGAAGAAATATCAGGTACTATCAAAGAAATCAAGGATATAGGAAC
TGATACTGTTGTAGGTGGTGATTGTCAAATGGACTTTCCTGGATATTCCG
CTACAAAAGGTACTTACAGCTTTTGTGATACTGTATCTGGTAGATACTTG
GTGCATATTTTGGTGACAAAAGAGAGGTCaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036786XLOC_036786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058397-exon-scaffold_310-1491911889:192141..192340TCONS_00058397-exon-scaffold_310-1491911889:192141..192340Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1510915933:192141..192340TCONS_00058397-exon-scaffold_310-1510915933:192141..192340Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1575043694:192141..192340TCONS_00058397-exon-scaffold_310-1575043694:192141..192340Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1491911889:192467..192649TCONS_00058397-exon-scaffold_310-1491911889:192467..192649Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1510915933:192467..192649TCONS_00058397-exon-scaffold_310-1510915933:192467..192649Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1575043694:192467..192649TCONS_00058397-exon-scaffold_310-1575043694:192467..192649Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1491911889:192838..192904TCONS_00058397-exon-scaffold_310-1491911889:192838..192904Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1510915933:192838..192904TCONS_00058397-exon-scaffold_310-1510915933:192838..192904Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1575043694:192838..192904TCONS_00058397-exon-scaffold_310-1575043694:192838..192904Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1491911889:195928..196057TCONS_00058397-exon-scaffold_310-1491911889:195928..196057Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1510915933:195928..196057TCONS_00058397-exon-scaffold_310-1510915933:195928..196057Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1575043694:195928..196057TCONS_00058397-exon-scaffold_310-1575043694:195928..196057Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1491911889:196286..196371TCONS_00058397-exon-scaffold_310-1491911889:196286..196371Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1510915933:196286..196371TCONS_00058397-exon-scaffold_310-1510915933:196286..196371Clytia hemisphaericaexon
TCONS_00058397-exon-scaffold_310-1575043694:196286..196371TCONS_00058397-exon-scaffold_310-1575043694:196286..196371Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058397-proteinTCONS_00058397-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:192141..196371 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0757033	0.0878987	0	0.104691	0	0.199616	0	0.0654188	0	0	0	0.154891	0	0.573065	1.70304	0.874169	0.358398	0.0825243	0.172712	0.300235	0.109833	0.623078	0	0.583449	0.0743878	0.319346	0.113605	0.0861653	0.175578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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