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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058400 ID=TCONS_00058400|Name=TCONS_00058400|organism=Clytia hemisphaerica|type=transcript|length=1527bp
GGCACGTTGTTGGGTCGACAATTGTGTTGTTGGAAAGCTCAGCAAACTTG
GCATGAATATTTGGAAGGTTGCACCACCAGAAATTTTGGATCTTATCAAT
TCCTGGGCTTTTCCAATTGGCGAATTTGTTTGTTGCAGACATGACTTCAT
CTGGCGTGATATCACTGTACTCGGACTGCTCGGCATCTATAGACTCTTCA
TACTGTTGGAGCCAGACGGATTCTTTGTTGTAGCACTTCCGTGTTTCGTA
CATTGGTTTCCAGAACTGTTCGATCCTTTCTTTCGATGGTGGGTCTTTGA
CTTCGGTCTTATTTCCTCGAAGCTCGTCGAACAATTTCGAAGGTTTCTCG
ATGAAATCGTTGTTCTGGCGGAATTGTGTTTGGCGTTTTTGGTATCGTGA
CAGTCTGTTGTTTAAAGCTAGCATGCGTTGCTTCAAAGTTTCTAATATTA
CTTCTCTTTCGTATTCGTCAGTGATGTTGTATTTTTGCCGCATGGCGttg
ttgttctttttcattttcgtaGAGGGATTTGGGTCTCGCATCTGTGATAC
TCGGCTTACGTCTCCTCGGATGTTGTCAATTCTCATTTTCATATTGAACA
CCCAGTTATCTCCCtttcgttgttttttatttgtttttcggtagATACAA
CATTTCTGCGCACTGATCTCATTTATAGCTGTGATCGCGGCCGCGTACGT
CAGATTGTTGAGTTGATTGACGTCAGAAATGTCAGTTAGCACTGTAGCGT
CTTCGAgaactttgtttacttttcccAAAGATTTTTCCAATGTTTTTAGG
GTCTTTTTGTTaggttttttgaaattataccTTTCTTCAAAGGGTGTGAC
GATACTATACGCATAGTTTTCGAGTAGTCTTTCCTTTAGTTGTAGGAGTT
CGTCTTCCTCTGGTTGATTTTCGTCCAGAATCTCGATATTTTCCGGTTCT
TCTTCGGGTTGTCGAGGCGGTTCGTTTTCAGGTGGTTGTTCGTGTTCTGG
ACCGGTTTCTGCCTCTGGTTGTTCGGTTAGTTGGTTTCGTGGCTGGTTTC
TTTCGTTGTCGATCTCATCTTGAATCTCATTTCGAATTTGTTGGATTTCC
AGCTCGGTTAACCAGCTTCCTCGTGTATTTTCTCTGGTGTTGACCTTCTT
TGTGATGACTTGTTTCCGGTCACAAATCTTTTGTTCTGTACACCGGATTT
CGGGGTGAAGGGCTTCCCATCTACGGTGGAACTCCTTTCGGTAAGGAGCG
TCAGGGTAGCGCAGAATTGTGTTGAAGAAGCAACGGATAACATCTGAGTT
TAGGTTTTTCGTCCATTTCATCCGTACCTCTCTTTGATGGTTTTGCGTGT
TGTTTTCTTCTGAAATAACAGCAGGCTCGTCATCTCGGTTGTTCTGCAGT
TGCTGTAGGTGTTGTTGGTTGTTTCTTAGTTCATTTTGTTGAAGAATCAC
GTTGCGTTCGTGACTTTCAAGAAAACTTTCGTTCATTTTCGTCAGAGCAC
AAATAGACACGTCTGCACTCTTTCGAC Run BLAST on NCBI transcript from alignment at scaffold_310:208658..210184+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058400 ID=TCONS_00058400|Name=TCONS_00058400|organism=Clytia hemisphaerica|type=transcript|length=1527bp|location=Sequence derived from alignment at scaffold_310:208658..210184+ (Clytia hemisphaerica)
GGCACGTTGTTGGGTCGACAATTGTGTTGTTGGAAAGCTCAGCAAACTTG
GCATGAATATTTGGAAGGTTGCACCACCAGAAATTTTGGATCTTATCAAT
TCCTGGGCTTTTCCAATTGGCGAATTTGTTTGTTGCAGACATGACTTCAT
CTGGCGTGATATCACTGTACTCGGACTGCTCGGCATCTATAGACTCTTCA
TACTGTTGGAGCCAGACGGATTCTTTGTTGTAGCACTTCCGTGTTTCGTA
CATTGGTTTCCAGAACTGTTCGATCCTTTCTTTCGATGGTGGGTCTTTGA
CTTCGGTCTTATTTCCTCGAAGCTCGTCGAACAATTTCGAAGGTTTCTCG
ATGAAATCGTTGTTCTGGCGGAATTGTGTTTGGCGTTTTTGGTATCGTGA
CAGTCTGTTGTTTAAAGCTAGCATGCGTTGCTTCAAAGTTTCTAATATTA
CTTCTCTTTCGTATTCGTCAGTGATGTTGTATTTTTGCCGCATGGCGttg
ttgttctttttcattttcgtaGAGGGATTTGGGTCTCGCATCTGTGATAC
TCGGCTTACGTCTCCTCGGATGTTGTCAATTCTCATTTTCATATTGAACA
CCCAGTTATCTCCCtttcgttgttttttatttgtttttcggtagATACAA
CATTTCTGCGCACTGATCTCATTTATAGCTGTGATCGCGGCCGCGTACGT
CAGATTGTTGAGTTGATTGACGTCAGAAATGTCAGTTAGCACTGTAGCGT
CTTCGAgaactttgtttacttttcccAAAGATTTTTCCAATGTTTTTAGG
GTCTTTTTGTTaggttttttgaaattataccTTTCTTCAAAGGGTGTGAC
GATACTATACGCATAGTTTTCGAGTAGTCTTTCCTTTAGTTGTAGGAGTT
CGTCTTCCTCTGGTTGATTTTCGTCCAGAATCTCGATATTTTCCGGTTCT
TCTTCGGGTTGTCGAGGCGGTTCGTTTTCAGGTGGTTGTTCGTGTTCTGG
ACCGGTTTCTGCCTCTGGTTGTTCGGTTAGTTGGTTTCGTGGCTGGTTTC
TTTCGTTGTCGATCTCATCTTGAATCTCATTTCGAATTTGTTGGATTTCC
AGCTCGGTTAACCAGCTTCCTCGTGTATTTTCTCTGGTGTTGACCTTCTT
TGTGATGACTTGTTTCCGGTCACAAATCTTTTGTTCTGTACACCGGATTT
CGGGGTGAAGGGCTTCCCATCTACGGTGGAACTCCTTTCGGTAAGGAGCG
TCAGGGTAGCGCAGAATTGTGTTGAAGAAGCAACGGATAACATCTGAGTT
TAGGTTTTTCGTCCATTTCATCCGTACCTCTCTTTGATGGTTTTGCGTGT
TGTTTTCTTCTGAAATAACAGCAGGCTCGTCATCTCGGTTGTTCTGCAGT
TGCTGTAGGTGTTGTTGGTTGTTTCTTAGTTCATTTTGTTGAAGAATCAC
GTTGCGTTCGTGACTTTCAAGAAAACTTTCGTTCATTTTCGTCAGAGCAC
AAATAGACACGTCTGCACTCTTTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058400-exon-scaffold_310-1491911889:208658..210184 | TCONS_00058400-exon-scaffold_310-1491911889:208658..210184 | Clytia hemisphaerica | exon |
| TCONS_00058400-exon-scaffold_310-1510915933:208658..210184 | TCONS_00058400-exon-scaffold_310-1510915933:208658..210184 | Clytia hemisphaerica | exon |
| TCONS_00058400-exon-scaffold_310-1575043694:208658..210184 | TCONS_00058400-exon-scaffold_310-1575043694:208658..210184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_310 | supercontig | scaffold_310:208658..210184 + |
Blast
The following BLAST results are available for this feature:
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