TCONS_00058417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058417
Unique NameTCONS_00058417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058417 ID=TCONS_00058417|Name=TCONS_00058417|organism=Clytia hemisphaerica|type=transcript|length=312bp
CAACTAGTAATTATTCTAAGAAATCAAGTTTTTAGCTTTTGCTCTTGTCA
TGAGAGTAGCGTTTTTTCGTGAAGGGTGAAAATAAAATTCTGGATCTTTA
AGAATGCGCGTCCATTTGCCTTGGCCATACTTCCTCAGTCCTTTAAGAAT
AAAATCGTCTTCTTCTGCTGTGAAAGAGCTTTTTGGCTTTCGTTCTGTTG
GTGAGCGTTGCGTGCTTTTTGGAGGTTTGGCTGTTGATGTAGGTTTCTTA
GGTTCTTGAGATTCGACATTTGGTGATTCGTCGTCTGGTTGAGAATTATC
GATAGACATGTC
Run BLAST on NCBI

transcript from alignment at scaffold_310:215719..216030

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058417 ID=TCONS_00058417|Name=TCONS_00058417|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at scaffold_310:215719..216030 (Clytia hemisphaerica)
GACATGTCTATCGATAATTCTCAACCAGACGACGAATCACCAAATGTCGA
ATCTCAAGAACCTAAGAAACCTACATCAACAGCCAAACCTCCAAAAAGCA
CGCAACGCTCACCAACAGAACGAAAGCCAAAAAGCTCTTTCACAGCAGAA
GAAGACGATTTTATTCTTAAAGGACTGAGGAAGTATGGCCAAGGCAAATG
GACGCGCATTCTTAAAGATCCAGAATTTTATTTTCACCCTTCACGAAAAA
ACGCTACTCTCATGACAAGAGCAAAAGCTAAAAACTTGATTTCTTAGAAT
AATTACTAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036805XLOC_036805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058417-exon-scaffold_310-1491911889:215719..216030TCONS_00058417-exon-scaffold_310-1491911889:215719..216030Clytia hemisphaericaexon
TCONS_00058417-exon-scaffold_310-1510915933:215719..216030TCONS_00058417-exon-scaffold_310-1510915933:215719..216030Clytia hemisphaericaexon
TCONS_00058417-exon-scaffold_310-1575043694:215719..216030TCONS_00058417-exon-scaffold_310-1575043694:215719..216030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:215719..216030 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170153	1.56016	1.1696	0	0.464345	0.733863	6.5726	6.63101	4.65137	4.72049	3.82981	0.25656	0.67361	0.47564	1.11605	1.41284	1.8094	1.28159	1.1947	0.513485	1.77997	0	0.394799	0.35893	0	0.659877	0	0	0.465175	0.0543261
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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