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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058423 ID=TCONS_00058423|Name=TCONS_00058423|organism=Clytia hemisphaerica|type=transcript|length=574bp
CTTTTTGagagaagtttttttgaaaccacACCTACTTTTCACACATTTAC
AAGTCGTCAATGCCATATGTttgtaattaatttttgaataatttacaCTG
GATGATacaaaattataatattttgaGCACATAATTATTTGTAAGTCGTT
GCTCTGCGCTCTACTTGTGTAGGCGGTCGTTTTAactatttgaaatgttt
ttattcagactttttactttattttcagtTCACTTTATTATCACTCAAAG
CCGACACTACTATGaaaatGGTAAAGAACAAAAGTTGTTTCATgggaagg
aaaatgaaaaagatgacgtcatcgaatcgGTATTCTTGGATGCACgttca
aaacacaaaacaaatgATAAAGTGATATCATCTCTTCAACGTCGTCGAAG
TTTGGAGGAATTCGATTGTCAAAAGGTGGAGTACATGTGCTCAGTAGATA
TCCTACCATGTGAGAAAAACAACATTTGTCAGAATTGTTGCTCAGCTGAT
TATACTTGTAATCCAGATGGATATTGTGGTCTGACAGACATGCCATCTCA
ATAATGGCACTGGTCTCAAAATGT Run BLAST on NCBI protein sequence of TCONS_00058423-protein >TCONS_00058423-protein ID=TCONS_00058423-protein|Name=TCONS_00058423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MFLFRLFTLFSVHFIITQSRHYYENGKEQKLFHGKENEKDDVIESVFLDA
RSKHKTNDKVISSLQRRRSLEEFDCQKVEYMCSVDILPCEKNNICQNCCS
ADYTCNPDGYCGLTDMPSQ Run BLAST on NCBI transcript from alignment at scaffold_311:56331..57571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058423 ID=TCONS_00058423|Name=TCONS_00058423|organism=Clytia hemisphaerica|type=transcript|length=1241bp|location=Sequence derived from alignment at scaffold_311:56331..57571+ (Clytia hemisphaerica)
CTTTTTGagagaagtttttttgaaaccacACCTACTTTTCACACATTTAC
AAGTCGTCAATGCCATATGTttgtaattaatttttgaataatttacaCTG
GATGATacaaaattataatattttgaGCACATAATTATTTGTAAGTCGTT
GCTCTGCGCTCTACTTGTGTAGGCGGTCGTTTTAactatttgaaatgttt
ttattcagactttttactttattttcagtTCACTTTATTATCACTCAAAG
CCGACACTACTATGaaaatgtaagaatatttttacttatttcACCTTAAT
GTCTGTGTATGAAAATACTTCATGTTTTCTTCAATCATGGACCAAttcaa
aacatttatttttctgcAAATTCAACAACATTTTACTTCGCTTTAAATTC
TAAAACTGGAGATGTTTATAATACGCATTTTTCATCATACCGGTGCTATA
ATGGATGTTAGTTTGTATCATACAGttatcataaaacttgttcaagtTCT
GGAGATATTCGGGTTATAGAGGTTTGATTGAAAGAGAGTccattgggctt
ttccataaaaaaaccgtataccccctgttgaggaggtccatccctctgtg
gctggaaatgctgtaaccccctgaaaattccaggcaatttcagctgtaaa
cccctctggaattctaaattttagtaggatttaaaagctacccccatgga
attccagttatttttgacagatttttgtatctccctatggaattccgcca
catatcaaaccttacctctttggaacggaaatggacctcctcaacagggg
gtatacggtttttttctggaaaagcccattgtaaTAATGTCCTTTAGTTC
TCTCTCTCCCTCTCTTAAATCGCAAGCGTTAGACTATCAATTCCAATACA
GAAAACTTTCATCTCGATTCTTCCTTCACTTCACAGGGTAAAGAACAAAA
GTTGTTTCATgggaaggaaaatgaaaaagatgacgtcatcgaatcgGTAT
TCTTGGATGCACgttcaaaacacaaaacaaatgATAAAGTGATATCATCT
CTTCAACGTCGTCGAAGTTTGGAGGAATTCGATTGTCAAAAGGTGGAGTA
CATGTGCTCAGTAGATATCCTACCATGTGAGAAAAACAACATTTGTCAGA
ATTGTTGCTCAGCTGATTATACTTGTAATCCAGATGGATATTGTGGTCTG
ACAGACATGCCATCTCAATAATGGCACTGGTCTCAAAATGT Coding sequence (CDS) from alignment at scaffold_311:56331..57571+ >TCONS_00058423 ID=TCONS_00058423|Name=TCONS_00058423|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_311:56331..57571+ (Clytia hemisphaerica)
atgtttttattcagactttttactttattttcagtTCACTTTATTATCAC
TCAAAGCCGACACTACTATGaaaatGGTAAAGAACAAAAGTTGTTTCATg
ggaaggaaaatgaaaaagatgacgtcatcgaatcgGTATTCTTGGATGCA
CgttcaaaacacaaaacaaatgATAAAGTGATATCATCTCTTCAACGTCG
TCGAAGTTTGGAGGAATTCGATTGTCAAAAGGTGGAGTACATGTGCTCAG
TAGATATCCTACCATGTGAGAAAAACAACATTTGTCAGAATTGTTGCTCA
GCTGATTATACTTGTAATCCAGATGGATATTGTGGTCTGACAGACATGCC
ATCTCAATAAatgtttttattcagactttttactttattttcagtTCACT
TTATTATCACTCAAAGCCGACACTACTATGaaaatGGTAAAGAACAAAAG
TTGTTTCATgggaaggaaaatgaaaaagatgacgtcatcgaatcgGTATT
CTTGGATGCACgttcaaaacacaaaacaaatgATAAAGTGATATCATCTC
TTCAACGTCGTCGAAGTTTGGAGGAATTCGATTGTCAAAAGGTGGAGTAC
ATGTGCTCAGTAGATATCCTACCATGTGAGAAAAACAACATTTGTCAGAA
TTGTTGCTCAGCTGATTATACTTGTAATCCAGATGGATATTGTGGTCTGA
CAGACATGCCATCTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058423-exon-scaffold_311-1491911889:56331..56599 | TCONS_00058423-exon-scaffold_311-1491911889:56331..56599 | Clytia hemisphaerica | exon |
| TCONS_00058423-exon-scaffold_311-1510915933:56331..56599 | TCONS_00058423-exon-scaffold_311-1510915933:56331..56599 | Clytia hemisphaerica | exon |
| TCONS_00058423-exon-scaffold_311-1575043694:56331..56599 | TCONS_00058423-exon-scaffold_311-1575043694:56331..56599 | Clytia hemisphaerica | exon |
| TCONS_00058423-exon-scaffold_311-1491911889:57267..57571 | TCONS_00058423-exon-scaffold_311-1491911889:57267..57571 | Clytia hemisphaerica | exon |
| TCONS_00058423-exon-scaffold_311-1510915933:57267..57571 | TCONS_00058423-exon-scaffold_311-1510915933:57267..57571 | Clytia hemisphaerica | exon |
| TCONS_00058423-exon-scaffold_311-1575043694:57267..57571 | TCONS_00058423-exon-scaffold_311-1575043694:57267..57571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:56331..57571 + |
Blast
The following BLAST results are available for this feature:
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