TCONS_00058427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058427
Unique NameTCONS_00058427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058427 ID=TCONS_00058427|Name=TCONS_00058427|organism=Clytia hemisphaerica|type=transcript|length=1004bp
ATTTTAAgctattattattttcttttcagtgacaaaataaagtaaaaaat
aaaaaatataaatataatatatataggTAAAAAGAGGCAATATGCTACTT
AGATATACAAAGcCTCTTCTTCGCACGGCGACATGCGGCTGTTTTATGAC
GAGGTcagcattacgtaatgtttcGTATATCCCGATGGTCGTGGAGcaaa
gtGGTCGGACAGAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAA
CGAATCATCTGCCTGTTTGGTCCCATCAATGACACTGTATCCAGCTTGAT
CGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGAAACCAATTC
ACATGTACATCAACAGTCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATT
TACGACACAATGCAGtacATCCAACCTCCAGTAGCGACATGGTGTGTGGG
ACAAGCTTGCAGTATGGGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGT
TACGTCACGCTCTTCCCCACTCACGTATCATGCTACATCAACCCCACGGT
GGAGCGCAGGGCCAAGCAACAGACATTGAGATTCAAGCCAAagagatttt
aaaattgaaatcaatGTTGAACGAGATATACAGCAAGCACACTGGACAAG
ACGTCAATGTCATCGAGGAAAAACTGGACCGCGATAATTTTATGTCGCCT
GAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTGCTTAACCAAACTCC
CGTTGCTACGGACAACCAAGATAACAAAGATGGCAGCGAAAAgtaaaatc
cataatggcgtgataattttttagttattttttagattttttatttagac
atttttcaaaagttttttccttttcacagttaTAATTTTCTACTTGACcg
aaaaaaagaattcaataaaattgaaaagaagTTTGCTTTTTACTTGTAGC
TTGGTGAAGAGAGAGGAGGGGTCGTTTCTCATCTCGTGTCGATTAGAAGG
CGTT
Run BLAST on NCBI

protein sequence of TCONS_00058427-protein

>TCONS_00058427-protein ID=TCONS_00058427-protein|Name=TCONS_00058427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MLLRYTKPLLRTATCGCFMTRSALRNVSYIPMVVEQSGRTERSYDIYSRL
LKERIICLFGPINDTVSSLIVAQLLFLQSESSKKPIHMYINSPGGVVTAG
LAIYDTMQYIQPPVATWCVGQACSMGSLLLASGAPGLRHALPHSRIMLHQ
PHGGAQGQATDIEIQAKEILKLKSMLNEIYSKHTGQDVNVIEEKLDRDNF
MSPEEAKTFGVVDHVLNQTPVATDNQDNKDGSEK
Run BLAST on NCBI

transcript from alignment at scaffold_311:94015..98980+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058427 ID=TCONS_00058427|Name=TCONS_00058427|organism=Clytia hemisphaerica|type=transcript|length=4966bp|location=Sequence derived from alignment at scaffold_311:94015..98980+ (Clytia hemisphaerica)
ATTTTAAgctattattattttcttttcagtgacaaaataaagtaaaaaat aaaaaatataaatataatatatataggTAAAAAGAGGCAATATGCTACTT AGATATACAAAGGTATGTATGCGATTCGTTCTTCAATGGATTACCTAAGC ATTGCGATGATTCGTAACTATTGCTGTCTTTTCGGAATAAGGGAACCGAA ATATATACAGTTTACTCGCTAGATGTGCTTCTAGAGAGAGAGATAGTCCT TTCGATTAACGGAATATGACAGCATTTGCTATTCTAGGATATGAAAATCA CTGATCTTATCTGACTCCCTGAAAACGTGCTCGTACCACACATCATAACT TTCTGACATGACgtttacctttttttataacttttagcCTCTTCTTCGCA CGGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgtttcG TATATCCCGATGGTCGTGGAGcaaagtgtaatttttcttttgtttctttc agcGGTAGTTTTCAGTCATCAACAACCTTTCAGTGGACATTTaaatacag ttgatgctctctaattcgacgttctactattcgatacgctacattattcg ataatattgaaatcgACCGTCAACAGGAAACTTTCATAAacgacattcta ctattcgataagctcccttatttaatgaaaatccaattctccTTGACGAT CGAATTTTAGAGCGtcttttatgagagtttcttgatGGCGGTGACTTTCA TCAATATCGAAGTTTCATTATTCCTTTACTTTAACTTGTGGTATGACGAT ATTAACACAAAGTGTTCAATGTGACAATATCTCTTTTTGGCGCACCACAA ATGTCGAATGTTGTAAAAAAACTTCGTTCATTGCTTTTCATGACAATATT TAGGCACCTAATTTCTTACCAATTTCCTATTTCCATATTAGGTATTAGTA TGAATCATAATTATAacaactttcttctttttcatcaacTGTAGGGTCGG ACAGAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATCAT CTGCCTGTTTGGTCCCGTAAGTTTGTTATTTCCATAAAATTAAGTTCATC CGTTTGCTTATAATTTCTTATGTCACATGCCAACGATGGTATGACTGAAT ATTGGAGAGCTAACTGATGCTTTTCTTGAAGGCTTTTACCCTCCAAAttg taaaacttttttcattaaTTCTTTTATGACTTCTGCTCCTacctagccta gttaactaagttcgtattcacaaggctaggacacactgcttatggcaata tagcgttttcggcgctccaaagattttttatatttaaggattttaagttt gcctatttagtcacaacttaccatcataTTTATCCTAGTGAATGAATCAA ACTTGCTGAAATTTCTAAGCTATTCTGCTCCCTTTGTTCCTGCTCCTTGG TAATAAGTGAGTGTTTATAGTGAGAGAGTCCTAATATCATTTTTATATTT CTGATGAACTGCTAAATCTTCATTTCTTCAGATCAATGACACTGTATCCA GCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGAAA CCAATTCACATGTACATCAACAGTCCAGGTATGAATATTTGATGTTGCCT GAAGTTAGAACGTCGCAGTCGGAGCTTTTCAATGTTTACAgttcaattga tttttaattttttattgtatttggaGCTTTTTTAGCTATACTACTTAGAT TTTTATCATGACGTTCTAAATCTATAGGCCTAGCAAGCGTGTACCAAGCG TGTTGGGGCTTAATATTCTGAAAATATTCCGAACGCTGTTATTCTGTTGC ATATGAAGATGTTCCAggtaccaaagatttccaaaatggtactttgTCCC TCTCTAAGAATGCTCAGCAAtcaaagagacggatcaagggtaagtaggGA CAATCCAGGGAGAAGAATGACGCCCGCCATTACATTCggatagatagcta tcgaaaaaggAGCCTTCGGGCTAGCTTCGGCTGCAATCGCATTTTATACA taagaattaaaattttcatctttttaggAGGAGTGGTGACGGCAGGTCTT GCAATTTACGACACAATGCAGGTTCGATGTCCCTTCTTTGTCATTTCGAC ACCAAGACagtttgatcatttaaaaaagtcgATTAATATACAGTAGTCAA AGCAAGGTTTCGTCTGAGATAGACAATTGATTTTTCACAGCAAATTTGCA CacattcttgaaattttggtctcTCATGTAGAAATTCAAGACGGAAAAGC CTCTTCATAAACTTCACTGAGaggaaataaattttaaaactgAATGTAAC ACTGATTGAAAGATAGGGCGATAAATCActtattctttttttcttcaaaa aagctgtaaaacttttttaacaaaGGTAATCTGGAACCATTCTCCTACTC TTCAGTtactgtttttcttttattttcagtaCATCCACTATTATCTTTCT TCAAAACAGTTATGATGACATTTTTAACAGTGTTCTCTTACTCTACTGGT ACTCTACTACTCTAAACTTctatctttttctttcattttcagtacATCCA ACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCC TCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCA CGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGTGTGTTCATCTAT ATTATCAACTGTGATACCCATGGAAGTTGTTTTTTGAACTTCGAACTCTC TTAGTCTACACATAGACAGCTTcgggcttttaggccttactttTGGTCCA TAGGCACTGCTAtcggcggccactagtgacccccatcgggaatttgcttt ttaatagaattaaacacaaaaaaatgttaaaaacacagctgatcggctta ggtttcgaaacccTCTATTGTTTCATCAAAACCTCAATGCGCATGCGATG TATCCGGAAAAATTTAATATTCAAAACAACAGCAGTgcgcatatcccgaa gagtaggagtttcacgctcgaaacgaagaaagatatgacgtagcctaaaa TTCTCTTAGTTTCACCTCACCCTCTTTAACAACTTTACCTATGGGAGTTT TTATTGAACTTCGAGTTCTCTTACTTTCTCTATATTACCGCAAACCGCTT TTGTCTATCGGCCGCTTTTACCCAGGGGACTTCTACAacttgaatgtctc cttaacttgaacaagtttgctggtcccttcagttagaAATACCTTTTAAA TTTACTTATATCTCGAAATTTTCTTGTCTCGAACAAATTTCTTTATTCCG CGTGGGTTctagttatagagactccactgaATTGATTTTATTCCTAATCC GTCAAAATCTataaacttacttacttttctATTTAATTTCTGACAAATAT TGTTATTGACTTTGTACATTTCTTCCATTAACAGGGCCAAGCAACAGACA TTGAGATTCAAGCCAAagagattttaaaattgaaatcaatGTTGAACGAG ATATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGGTAAATCTGC TCATTTCTCATTTTGTCAGTAATGATagataggccttttcataaattatg tcacGACCAACTCGCGCCTTggggtttttataagaatgggctgttccaga aatagtctgtacccgctattttgaggaggtgtgacgtccagggtggtctg gaaattaaaaaatccaaaatggtcTGGTTTTTCAAGTGTAAAAAGTGGTC AGCAAAATGAGGTGGGAAATCCAGGATGGTAAGTAAAGCGGGgacaaaaa tccagggtggtcaaaaaaagaagaaaaaaaatacaatagagtcctgaaaa attaaaaaaaaaaattcaggggGGGTCACCTTTCGCAAAAATGACCTCAA CATAGGggtcacaatttttttctgaaatagcCCAATGGTGTACTTTgaat gagggtcaagtattcttaagaaattgagGAGTgtaatattcttaacgtat tcttacttttttaaacttaacttttttacaaacatgagaaatgataaATT TGATAGTTTGAGACTTTCGATTGTACTTTGGAatctaaaattatatttct gcctcaaagtttcAAATTaatagggtattcttacgattttgccaatttca ccctgatattcttacaGAACATGTTCTAATAAATAAGTGTGTATTGCTAT GAGAACTTATCCAATCGGAATCTTTTAGAGgtgttttcttttcattaaaa aatccaAGAGTCTCAAGAGAGATATATCATTTTATTTTAGCTGTTACGTC TTTTGAGATATGACAATCTAAAGTATCTAGaaatgggttcttacacggCT CTACGCCAAAActctattgtctttttgttaAATGTATATGACTTGTAACT TATTCATTTAGATTTTTTAGTTAGtaaggcaaaaatattttgaggcttTT CTTAGGACAATAGAAGGAATctacaggcaaaaaaaaaatctcaaaccatc ttTAAAACATCCCAATTTATTGTGTTGCTGCAATTAAACAACtttcttca aaatattcttattttcatctttcaTAGAGGAAAAACTGGACCGCGATAAT TTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTGCT TAACCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGATGGCAGCG AAAAgtaaaatccataatggcgtgataattttttagttattttttagatt ttttatttagacatttttcaaaagttttttccttttcacagttaTAATTT TCTACTTGACcgaaaaaaagaattcaataaaattgaaaagaagTTTGCTT TTTACTTGTAGCTTGGTGAAGAGAGAGGAGGGGTCGTTTCTCATCTCGTG TCGATTAGAAGGCGTT

Coding sequence (CDS) from alignment at scaffold_311:94015..98980+

>TCONS_00058427 ID=TCONS_00058427|Name=TCONS_00058427|organism=Clytia hemisphaerica|type=CDS|length=5640bp|location=Sequence derived from alignment at scaffold_311:94015..98980+ (Clytia hemisphaerica)
ATGCTACTTAGATATACAAAGcCTCTTCTTCGCACGGCGACATGCGGCTG
TTTTATGACGAGGTcagcattacgtaatgtttcGTATATCCCGATGGTCG
TGGAGcaaagtGGTCGGACAGAACGTTCATATGATATCTACTCGAGGCTT
TTAAAAGAACGAATCATCTGCCTGTTTGGTCCCATCAATGACACTGTATC
CAGCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGA
AACCAATTCACATGTACATCAACAGTCCAGgAGGAGTGGTGACGGCAGGT
CTTGCAATTTACGACACAATGCAGtacATCCAACCTCCAGTAGCGACATG
GTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCCTCCTTGCTTCTGGTG
CACCAGGGTTACGTCACGCTCTTCCCCACTCACGTATCATGCTACATCAA
CCCCACGGTGGAGCGCAGGGCCAAGCAACAGACATTGAGATTCAAGCCAA
agagattttaaaattgaaatcaatGTTGAACGAGATATACAGCAAGCACA
CTGGACAAGACGTCAATGTCATCGAGGAAAAACTGGACCGCGATAATTTT
ATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTGCTTAA
CCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGATGGCAGCGAAA
AgtaaATGCTACTTAGATATACAAAGcCTCTTCTTCGCACGGCGACATGC
GGCTGTTTTATGACGAGGTcagcattacgtaatgtttcGTATATCCCGAT
GGTCGTGGAGcaaagtGGTCGGACAGAACGTTCATATGATATCTACTCGA
GGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGTCCCATCAATGACACT
GTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAG
CAAGAAACCAATTCACATGTACATCAACAGTCCAGgAGGAGTGGTGACGG
CAGGTCTTGCAATTTACGACACAATGCAGtacATCCAACCTCCAGTAGCG
ACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCCTCCTTGCTTC
TGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCACGTATCATGCTAC
ATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACAGACATTGAGATTCAA
GCCAAagagattttaaaattgaaatcaatGTTGAACGAGATATACAGCAA
GCACACTGGACAAGACGTCAATGTCATCGAGGAAAAACTGGACCGCGATA
ATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTG
CTTAACCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGATGGCAG
CGAAAAgtaaATGCTACTTAGATATACAAAGcCTCTTCTTCGCACGGCGA
CATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgtttcGTATATC
CCGATGGTCGTGGAGcaaagtGGTCGGACAGAACGTTCATATGATATCTA
CTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGTCCCATCAATG
ACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAG
AGCAGCAAGAAACCAATTCACATGTACATCAACAGTCCAGgAGGAGTGGT
GACGGCAGGTCTTGCAATTTACGACACAATGCAGtacATCCAACCTCCAG
TAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCCTCCTT
GCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCACGTATCAT
GCTACATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACAGACATTGAGA
TTCAAGCCAAagagattttaaaattgaaatcaatGTTGAACGAGATATAC
AGCAAGCACACTGGACAAGACGTCAATGTCATCGAGGAAAAACTGGACCG
CGATAATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACC
ACGTGCTTAACCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGAT
GGCAGCGAAAAgtaaATGCTACTTAGATATACAAAGcCTCTTCTTCGCAC
GGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgtttcGT
ATATCCCGATGGTCGTGGAGcaaagtGGTCGGACAGAACGTTCATATGAT
ATCTACTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGTCCCAT
CAATGACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTTACAAT
CAGAGAGCAGCAAGAAACCAATTCACATGTACATCAACAGTCCAGgAGGA
GTGGTGACGGCAGGTCTTGCAATTTACGACACAATGCAGtacATCCAACC
TCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCC
TCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCACGT
ATCATGCTACATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACAGACAT
TGAGATTCAAGCCAAagagattttaaaattgaaatcaatGTTGAACGAGA
TATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGAGGAAAAACTG
GACCGCGATAATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGT
CGACCACGTGCTTAACCAAACTCCCGTTGCTACGGACAACCAAGATAACA
AAGATGGCAGCGAAAAgtaaATGCTACTTAGATATACAAAGcCTCTTCTT
CGCACGGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgt
ttcGTATATCCCGATGGTCGTGGAGcaaagtGGTCGGACAGAACGTTCAT
ATGATATCTACTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGT
CCCATCAATGACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTT
ACAATCAGAGAGCAGCAAGAAACCAATTCACATGTACATCAACAGTCCAG
gAGGAGTGGTGACGGCAGGTCTTGCAATTTACGACACAATGCAGtacATC
CAACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTC
CCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACT
CACGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACA
GACATTGAGATTCAAGCCAAagagattttaaaattgaaatcaatGTTGAA
CGAGATATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGAGGAAA
AACTGGACCGCGATAATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGT
GTTGTCGACCACGTGCTTAACCAAACTCCCGTTGCTACGGACAACCAAGA
TAACAAAGATGGCAGCGAAAAgtaaATGCTACTTAGATATACAAAGcCTC
TTCTTCGCACGGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgt
aatgtttcGTATATCCCGATGGTCGTGGAGcaaagtGGTCGGACAGAACG
TTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGT
TTGGTCCCATCAATGACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTA
TTTTTACAATCAGAGAGCAGCAAGAAACCAATTCACATGTACATCAACAG
TCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATTTACGACACAATGCAGt
acATCCAACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATG
GGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCC
CCACTCACGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGGCCAAG
CAACAGACATTGAGATTCAAGCCAAagagattttaaaattgaaatcaatG
TTGAACGAGATATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGA
GGAAAAACTGGACCGCGATAATTTTATGTCGCCTGAAGAAGCGAAAACCT
TCGGTGTTGTCGACCACGTGCTTAACCAAACTCCCGTTGCTACGGACAAC
CAAGATAACAAAGATGGCAGCGAAAAgtaaATGCTACTTAGATATACAAA
GcCTCTTCTTCGCACGGCGACATGCGGCTGTTTTATGACGAGGTcagcat
tacgtaatgtttcGTATATCCCGATGGTCGTGGAGcaaagtGGTCGGACA
GAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATCATCTG
CCTGTTTGGTCCCATCAATGACACTGTATCCAGCTTGATCGTGGCTCAGT
TGTTATTTTTACAATCAGAGAGCAGCAAGAAACCAATTCACATGTACATC
AACAGTCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATTTACGACACAAT
GCAGtacATCCAACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCA
GTATGGGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCT
CTTCCCCACTCACGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGG
CCAAGCAACAGACATTGAGATTCAAGCCAAagagattttaaaattgaaat
caatGTTGAACGAGATATACAGCAAGCACACTGGACAAGACGTCAATGTC
ATCGAGGAAAAACTGGACCGCGATAATTTTATGTCGCCTGAAGAAGCGAA
AACCTTCGGTGTTGTCGACCACGTGCTTAACCAAACTCCCGTTGCTACGG
ACAACCAAGATAACAAAGATGGCAGCGAAAAgtaaATGCTACTTAGATAT
ACAAAGcCTCTTCTTCGCACGGCGACATGCGGCTGTTTTATGACGAGGTc
agcattacgtaatgtttcGTATATCCCGATGGTCGTGGAGcaaagtGGTC
GGACAGAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATC
ATCTGCCTGTTTGGTCCCATCAATGACACTGTATCCAGCTTGATCGTGGC
TCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGAAACCAATTCACATGT
ACATCAACAGTCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATTTACGAC
ACAATGCAGtacATCCAACCTCCAGTAGCGACATGGTGTGTGGGACAAGC
TTGCAGTATGGGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTC
ACGCTCTTCCCCACTCACGTATCATGCTACATCAACCCCACGGTGGAGCG
CAGGGCCAAGCAACAGACATTGAGATTCAAGCCAAagagattttaaaatt
gaaatcaatGTTGAACGAGATATACAGCAAGCACACTGGACAAGACGTCA
ATGTCATCGAGGAAAAACTGGACCGCGATAATTTTATGTCGCCTGAAGAA
GCGAAAACCTTCGGTGTTGTCGACCACGTGCTTAACCAAACTCCCGTTGC
TACGGACAACCAAGATAACAAAGATGGCAGCGAAAAgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036815XLOC_036815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058427-exon-scaffold_311-1491911889:94015..94126TCONS_00058427-exon-scaffold_311-1491911889:94015..94126Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:94015..94126TCONS_00058427-exon-scaffold_311-1510915933:94015..94126Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:94015..94126TCONS_00058427-exon-scaffold_311-1575043694:94015..94126Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1491911889:94402..94491TCONS_00058427-exon-scaffold_311-1491911889:94402..94491Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:94402..94491TCONS_00058427-exon-scaffold_311-1510915933:94402..94491Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:94402..94491TCONS_00058427-exon-scaffold_311-1575043694:94402..94491Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1491911889:95009..95080TCONS_00058427-exon-scaffold_311-1491911889:95009..95080Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:95009..95080TCONS_00058427-exon-scaffold_311-1510915933:95009..95080Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:95009..95080TCONS_00058427-exon-scaffold_311-1575043694:95009..95080Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1491911889:95546..95642TCONS_00058427-exon-scaffold_311-1491911889:95546..95642Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:95546..95642TCONS_00058427-exon-scaffold_311-1510915933:95546..95642Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:95546..95642TCONS_00058427-exon-scaffold_311-1575043694:95546..95642Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1491911889:96092..96135TCONS_00058427-exon-scaffold_311-1491911889:96092..96135Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:96092..96135TCONS_00058427-exon-scaffold_311-1510915933:96092..96135Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:96092..96135TCONS_00058427-exon-scaffold_311-1575043694:96092..96135Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1491911889:96607..96750TCONS_00058427-exon-scaffold_311-1491911889:96607..96750Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:96607..96750TCONS_00058427-exon-scaffold_311-1510915933:96607..96750Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:96607..96750TCONS_00058427-exon-scaffold_311-1575043694:96607..96750Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1491911889:97499..97604TCONS_00058427-exon-scaffold_311-1491911889:97499..97604Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:97499..97604TCONS_00058427-exon-scaffold_311-1510915933:97499..97604Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:97499..97604TCONS_00058427-exon-scaffold_311-1575043694:97499..97604Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1491911889:98642..98980TCONS_00058427-exon-scaffold_311-1491911889:98642..98980Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1510915933:98642..98980TCONS_00058427-exon-scaffold_311-1510915933:98642..98980Clytia hemisphaericaexon
TCONS_00058427-exon-scaffold_311-1575043694:98642..98980TCONS_00058427-exon-scaffold_311-1575043694:98642..98980Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058427-proteinTCONS_00058427-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:94015..98980 +
Expression

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min expression (13.1879 tpm) - - (134.771 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
134.771 133.033 58.5619 50.2246 50.3713 43.6085 80.3808 84.3827 63.4406 76.3455 50.4568 45.4133 31.0743 34.6752 37.9596 40.4645 80.837 71.2494 13.1879 19.4096 47.4617 44.4483 91.7431 83.5009 45.5653 42.2054 56.1124 53.8113 64.9358 60.7091
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001907ClpP
IPR023562ClpP/TepA
IPR018215ClpP_Ser_AS
IPR033135ClpP_His_AS
IPR029045ClpP/crotonase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Expect = 8.85e-91 / Id = 64.47SequenceCLPP
Match NameE-valueIdentityDescription
CLPP8.854e-9164.47ATP-dependent Clp protease proteolytic subunit, mi... [more]
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