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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058518 ID=TCONS_00058518|Name=TCONS_00058518|organism=Clytia hemisphaerica|type=transcript|length=2136bp CTGGAGACGACTCAATTTATTGTTGATATAAACGAAGGAGTGCTCTTGTT TGTCATATAAGGAAGAACTATCGGAGCATCTACCTCCATCGTATGGCTTA TTTATCCTAAATATATTGAAGAATAAACGAACGTCAGTCACctatatttt catttatttggTGTACGAGAGTAAGAAGAAGTGATctagtaaaaaaaaGA GTTTGACAAAATGAACATGTTACTCCAAACCATGGTGCTTTTGGGTGTTG TGCTCTATTCAGTCAAGAGTAAAGACAACAGAACACGCATCGCCAAACGT TCAGCAAGTGTTTACAGTGTAGAAGGTTGCTTCAGGATGTTTCCACCGGG TTCTTTGGATTCATCAGACATGGGAATTCATCAAAGTTCCAATATCAGAT GTCAAGAAATTTGTCGTGATAAAGGATACGTGCTCGCCGCTACTAAAGGC CAGATGTGTCATTGTTCCAATATTTATCCACGAGGAAAAAAAGTAGTCAA TCAAGAATGTTCTACAAGATGTCGTTCATATACACCATGCCATGATGTCC AGAGCTGCTGTGGAGGTCCCAACGCATACTCCGTTAGCGTGGTAGGAGAT ATTGACGTCGCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCAAAC GAATATGGGATATCATAATTCAATGTTGAGACATGTTGGATTACTTTACG ATGCCGATTGGAGATCTTCTATCGAGAATGGAGGCTGGTCGAAATGCAAT AAGGAACATTACATCAATGGGCTATCAAGAGAAAACCAATACAGTGGATC GTCGTCTGATCCTCTTGGAAGAATCGATTATGCAAGTTGCCAAAAGGAGC CTGGAGATCAAGTTTGCAACTATCaatttgcttttcttttcaccaGTGGA ACGGTTtggaaaacttgtaaacaagGATACTTTATGTCTGGTGTCTTCAC GCAACCAGGGGCTCAAAAAATCTCCGATCTTGCCCAATTCCATTGTTGCC GACCCaagaaacaaaaagaacaaTGGGGACAATGTTATAATCACGATGTA TCTTCATCCTTAGATAATAAAGGTTGGTCTACATGTCGATCCGGATATTT CATGGCTGGAATGGAACGAGGTGATTGTGATGGTTTACACTGcgtcaatc aaatcaaatgttGTCAAATGGAAAGCCTGGCTGTCAGTGAAAACCCAAAA CTGTCCATCAAGCTCAAGGACACCGCAAACAAAGGACAATTGAAAGAATG CACCATGGAAGGGAGAGATCTTACACCTGAAAGTAAAACCTACGAATGCA AATCTCTTAATAGTTTAAAAGATGTGGCAAGTTTGGAATCTGTATCTTTC AAGATGGAAGACGAATCAGATCCTTTGACTTCGAAACCCGAACGTGTCAA AAATTATATCCCTGTTATCTGTATGCCAAGATCTTATGCTTATGAATGCA AAAAGGTTCTTGCTGTCTCAATATCATCATCCAGTACTTTCACTATCGGC TCTGGTTTCTCGATGTCAACAACGTTCGGAGTGAAAACATCTTTCGAAGC CAACTTCTTTGGTCAAAAGTTCACCAACGAAATCTCCTTTCAGCTGTCAA TGTCATCATCGTTCGATATTAGCCGCAGTACTACTAGAACCAGAACGGTA ACCGATACAACATGGGTGACCGTTAAGGTTCCAGCTAACCAGCAAGTTAT GATTGATCTCCTTCGACAGAAAATCGACATCGTTTACAAATGGAGTGGCG TTTTTCGTCTTCTTGGTAAATACAAAATGAATTGGCAGACAGCAAAGAAA GAAGAAACGAAACAAGATATCACAACAGTATTGAGTGGTCCTGATCGTGA GATGTATGCTTTCGGTAAATGGAAATATCCCAATACTGACGTCTTACAAG TTGTGGTGACTGATAAATATGGTGAGAAGAAAGGATGTGAACATGCAACA GGTGTTGATAAAAACTGTCtcattgattgatttaaaatttgaaattgttt tcttttggcAGTGTGTGTATCGTACCTTTTAACAGAATATATCTTTGAGA AAGTTTTATCCTATATTTTACCATGTCTTTGAGTAATTCAAGTTTTAAGA CGTCACCATCAATGACCATAAATCGGTTTTCCTGTA Run BLAST on NCBI transcript from alignment at scaffold_311:255704..262451- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058518 ID=TCONS_00058518|Name=TCONS_00058518|organism=Clytia hemisphaerica|type=transcript|length=6748bp|location=Sequence derived from alignment at scaffold_311:255704..262451- (Clytia hemisphaerica) CTGGAGACGACTCAATTTATTGTTGATATAAACGAAGGAGTGCTCTTGTT
TGTCATATAAGGAAGAACTATCGGAGCATCTACCTCCATCGTATGGCTTA
TTTATCCTAAATATATTGAAGAATAAACGAACGTCAGTCACCTATATTTT
CATTTATTTGGTGTACGAGAGTAAGAAGAAGTGATCTAGTAAAAAAAAGT
AGGTAATTTTTCTCTGTATAAAGTTACGACAAAAGTCAAGAAACATCGAT
GCTTTTGGTTGTAGTGTGACTGGGTGGTTGTCTTATTTCACACCCCTTTT
TCTTACGCCCCTGTGTCACAGACAGAACGGTGGAACTCCCACGCCTCACT
GGAAAATTTCAAAATTTTCTTTTCTGATGGGAAATACTTTACAATTTTAG
GGCCACCGGAAAATTGACTTTATTATCATATACCCATTGAAAATTAAGGA
AATTGATACTTCAATGGATTTTTTCTACAACAGAACTACAAAATATCTGT
CTCCATCAGGCATTCGCTAGAAATTTTAATCGCTACTTTGGGAAAAGGTT
CCATTGGAGCTGTGAGCCAGGATTGTTTCTGTCCTGTGAATTTGGACAAG
AGACAAAAATTTCTATTTCCCCCAGGCAAAATCCTAAGGGCGAAATTTTT
TGAAAATTTCTAACTCACTTTTAGACATTATCAAGTATACCATTCGAAAG
CTCTCGAAAAACTATATATAAGACTTTTAAACGGTTATAGCCGATTTCCT
TACCTAACTCGAGATATTTCATGCGCAAGTTCCACTTTTCGCCACATTTT
GGTCTAAAATGACCATAAATANTTTCATGCGCAAGTTCCACTTTTCGCCA
CATTTTGGTCTAAAATTGACCATCTATAGCATCTTCTGCGTGAATTATCT
TTAGTTAGGTAATGAAATCGGCTTTACCCGTTTAAAAGTCTAGTTTTTCG
AGAGCTTTCGAATGGTATACTTGATAATGTCTGAAAATGAGTTTGAAATT
TTCAAAAAATTTTGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAATGTTC
CAAAAAAAGGATGTTCCACCAGTGGGATTTTAGGGGATTTTTTCCTGAGG
CATAAAAATCCTATAGAGAAGGTCTGGAGAAAGATTCAGCTGGATCTTAT
TTTTTCCCTTAAATGATGCTAAACAACCCCACTATACAGTTAACTCTGTA
TGTCTCGATTTAGGAGTTTGACAAAATGAACATGTTACTCCAAACCATGG
TGCTTTTGGGTGTTGTGCTCTATTCAGTCAAGAGTAAAGACAACAGAACA
CGCATCGCCAAACGTTCAGCAAGTGTTTACAGTGTAGAAGGTTGCTTCAG
GTAAGGTGGTTTTCCATTTGTCATTGTACTTTGTCTTTGACTTTTTGATA
GTCGGCTTTTCTGAAATTATCAGCTATTTTAGTTAAAAGCAATTTTGCAA
ATTAGAGCTTTGAGAAGCAATTGAGGCAATAAATTTAGTGCTCTCTCTCT
CCTCCATTACTAAAAATAAATCAACAGCATTTTATTTTCTAAGAGACTAT
AGGGCTATAGGCAGTGAAAAAATAACAACATTTGATTGGCTGTGTTTTCA
ACTGTCATTAAGATCTGGGAAATTTAAACTCAAACCATATGCTGTTCATT
TCGCCATAAGTATATAAGATTTTGGTCAAAATATATTGAGATTTTAGTGT
ATTTCAACGTTTTTCAGAATTCAAAGTTCGGGCGAAAATTGCTATTTTGG
CACTTTAACTTTCTTTCATTAAATATTTTGATTTTGGAGGAGTTCGTTGG
CTTCTAGGCTATATTCCAAGCCTTATTAGAGCAAATTTGAGCCTCCTGAG
ATCGTAAGTCTTAAGTCTTAAATCTCTCTCTTATGTTATAATCATCCTAC
CGGTAAACAACGTTGTCTCAACGTCCATCTAATGTTCACAACGTCCATAT
AACGTTCCCGGGGGGGGGGGGGGCTGGGCAAAAGGACCGACGGGTATGGG
CGGGCACTAAGGGTGTCTTTTTCAAGGCACCTCAAATGCACTGTAAGGGT
CGGAAAAACTAGAGATGCACTGTAAGGGTAGAAATTTCAGAAAATTCTTG
AAAAATCTAGATATTTTGACCAAAAATGCTAGAATTTTGACCATTTTTAG
CACGAAAGGGATCGAAAATTTGGGGGAAAATGCACTCTAAGGGTGTGATT
TTCACTGATTTTTGCTGCACTGTAAGGGTGCAATTTTAATTGCCAAGTTT
TGGCCCGCACATACCGTCAGTCCGCAAACCCAGTGCCCCCCTCCCCCCGG
GATAACGTTAGACGAACGTATATGAAACAACGTTGTTTCTGCTGGGTTAT
GTCAAGTCAAAAATGAATACAGTCTACACTATAAAAGCTCAGATCATAAC
TAATTTTCTTTCCCAGGATGTTTCCACCGGGTTCTTTGGATTCATCAGAC
ATGGGAATTCATCAAAGTTCCAATATCAGATGTCAAGAAATTTGTCGTGA
TAAAGGATACGTGCTCGCCGCTACTAAAGGTACCGAATTAATGTACATAA
GATTTTTGAGAACTTTAGGATATTGGGGAATCGCATTTCATTCTCGCTTC
TTTCTTTTATTCGGAAGGGTTTTATTGGCTTCCAGGCTATATTCTCAGCA
TTATTGCAACTTTTTTTAAATCATAAAGACCTAAGATTAATCTGTAGTCT
AAGATTAAAACAATACATTCCAGAGGTAAGTTTGAACATTTAAAAATCAA
TTATTTTTAAGCGCATTCCCTTAATCAAATTTAATGACTAGAATTGTGAC
CGTCATGTTATCACAAATACTTATCCTAAGTAGCGTAAGTTGGTCTAATG
TCGACATCCCTCTTCTAATTTCGACACCCTTCTTTAGGGATAGGAATTAT
AGGAAGGTCGGAATCGCTGATGGAAACTGTTTTTCTTTACTTGGCGATCG
ATTGGAAAAAATTTTTTTGTCTATTAGCGATACCGACTTTCCTAATATTC
CTGTCTCTAAAGAAGGGTGTCGAGACTAGTAGAGCGATGTCGACATTAGA
CTAAGTTACGGTAGCCCAGAACTGTTCCATTCTTTTTACAGGCCAGATGT
GTCATTGTTCCAATATTTATCCACGAGGAAAAAAAGTAGTCAATCAAGAA
TGTTCTACAAGATGTCGTTCATATACACCATGCCATGATGTCCAGAGCTG
CTGTGGAGGTCCCAACGCATACTCCGTTAGCGTGGTAGGAGATATTGACG
TCGCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCAAACGAATATG
GGATATCATAATTCAATGTTGAGACATGTTGGATTACTTTACGATGCCGA
TTGGAGATCTTCTATCGAGAATGGAGGTTAGACTTTTATTAAAAGCATTC
TTTCCCAGCTTGCACACAACGTTGTTTCAACGTTTATCTAACATTCACAA
CGTCCATATAACGTTAAATGAACGTTGAAACAACGTTGTGTGCCAGTATT
CTATCATCTCAACCCTATAATTACTGAAATTGCAGAAATAGCATTCCGAA
ACCATCCCCATTAGATTTTTTAACCTTGGAGCAATAGAATTTTTATCCCC
ATTGAGATTTCAATCGAAATTTTCATCCCCGTTGTAGCTGTAGGAAAAAG
TTTCACCGGGGCTGCGAGACAGGGGTACGTTTATCGGTGAAAATAAAGTC
AGCTTGATAGGCGTATAACATATTTAGGGAGTACTGACTAAAATTGTCTT
TAGTTTTTGCAAAATTTTAAATAAATAACACACTTGTTTAAATAAACAAA
GCATGCTAAAAATATTTAGAATTTTGAAATAATACAGAGTATTAGTGTAG
AAACATGTAGAAACACTATGAGATTCGATCGAGGTAAATCAACTGAAACA
GGCCATTTGTTATAAAAAGTGTTTATCTTGTTTTGATACAGGGCTTCCAA
ATAGACCTTTTTGATTCTAGGGCCAAATATAAGGCCTGGGGGGGCACTCG
ATTTTGAAAACGACCGTACATTCAGCCAAAAATCAGATCTCTAAAATTAC
AGTGCAGGAAAAATTTGGCTGAAAATCGACCATTATAGTGCAATTTTTTG
AAATTTTGGGCCCTTTTCAGGGCAAAATTGTTTGAAATTTCTCAAATTTC
TCAAATTTCCAAAGTCCAAAAAACCTACCCTTAAGGGCTGCACGTCCGGT
AGGTCACTTACTTGAAGTGCCCACCCCCCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCCCCCCCCCCGGATATAAGGGGACCATTGGA
CCATTCATTTCTTTCCTTTTTCTACAATGTATATTGGGTTTCGTTATGGT
TAGTCACTAGTTTGTATTTTTTTCAGAGTGTATATAACTTCACTATATAT
CTTTTAGGCTGGTCGAAATGCAATAAGGAACATTACATCAATGGGCTATC
AAGAGAAAACCAATACAGTGGATCGTCGTCTGATCCTCTTGGAAGAATCG
ATTATGCAAGTTGCCAAAAGGAGCCTGGAGATCAAGTTTGCAACTATCAA
TTTGCTTTTCTTTTCACCAGTGGAACGGTTTGGAAAACTTGTAAACAAGG
ATACTTTATGTCTGGTGTCTTCACGCAACCAGGGGCTCAAAAAATCTCCG
ATCTTGCCCAATTCCATTGTTGCCGACCCAAGAAACAAAAAGAACAATGG
GGACAATGTTATAATCACGATGTATCTTCATCCTTAGATAATAAAGGTTG
GTCTACATGTCGATCCGGATATTTCATGGCTGGAATGGAACGAGGTGATT
GTGATGGTTTACACTGCGTCAATCAAATCAAATGTTGTCAAATGGAAAGC
CTGGCTGTCAGTGAAAACCCAAAACTGTCCATCAAGCTCAAGGACACCGC
AAACAAAGGACAATTGAAAGAATGCACCATGGAAGGGAGAGATCTTACAC
CTGAAAGTAAAACCTACGAATGCAAATCTCTTAATAGTTTAAAAGATGTG
GCAAGTTTGGAATCTGTATCTTTCAAGATGGAAGACGAATCAGATCCTTT
GACTTCGAAACCCGAACGTGTCAAAAATTATATCCCTGTTATCTGTATGC
CAAGATCTTATGCTTATGAATGCAAAAAGGTTAAAATATGTTAATTTTGT
TTTATGTTTTCTCACGAAGGGCAAGATAGATTGATTTAAAAATCTTTAAA
AGTTTAAATATCAGCAACTAGCCGTTTTGAAAAAAAGTTTTCATACTCCT
AGGTTCCAAATAGACGCCCAATCCCCCGCTTGTTGATTTTTCGACAATTT
TCCAAAGACCCTTTGACCTTCTTAGGACCCCCTGTTTATAAATTTTTAAG
AATATTTTCAGCTGCCAAAGGTGTTTATTTTTCTCCAAATAGCCTGATTT
TAGCCTACATTTACCTTATTTTTGGGTTTTCAGGAGTACAATTTCCAATC
CCCCGCAATTAGCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCTCCCCCGTTTATTTGGAACCTAAGAGTATACAATTTTCAGTT
TTTCGTTCTCTGACGACATTACGTCAGCCGATAGAAGTGTCAGCACTTAT
ACTTATTAGTCAGTTATTTGGCGATAACCTCAGTTTTCTTGTTAACAAAT
TTGTTTCAGTGTAGCAGGCGATTTTGGTCTTTTCTGTAAGGCATAATCGA
CAATTTTTCGTTTCTGGGGTGTCCGCAGGTGCTTTCCTAGCGACTCTCAA
GGTTATCGTGGGTGTGAATTTTTTTCTTTATTTATAACAATTGTTTTCTT
TTCGTATATCCCATCAGGTTCTTGCTGTCTCAATATCATCATCCAGTACT
TTCACTATCGGCTCTGGTTTCTCGATGTCAACAACGTTCGGAGTGAAAAC
ATCTTTCGAAGCCAACTTCTTTGGTCAAAAGTTCACCAACGAAATCTCCT
TTCAGCTGTCAATGTCATCATCGTTCGATATTAGCCGCAGTACTACTAGA
ACCAGAACGGTAACCGATACAACATGGGTGACCGTTAAGGTTCCAGCTAA
CCAGCAAGTTATGATTGATCTCCTTCGACAGAAAATCGACATCGTTTACA
AATGGAGTGGCGTTTTTCGTCTTCTTGGTAAATACAAAATGAATTGGCAG
ACAGCAAAGAAAGAAGAAACGAAACAAGATATCACAACAGTATTGAGTGG
TCCTGATCGTGAGATGTATGCTTTCGGTAAATGGAAATATCCCAATACTG
ACGTCTTACAAGTTGTGGTGACTGATAAATATGGTGAGAAGAAAGGATGT
GAACATGCAACAGGTGTTGATAAAAACTGTCTCATTGATTGATTTAAAAT
TTGAAATTGTTTTCTTTTGGCAGTGTGTGTATCGTACCTTTTAACAGAAT
ATATCTTTGAGAAAGTTTTATCCTATATTTTACCATGTCTTTGAGTAATT
CAAGTTTTAAGACGTCACCATCAATGACCATAAATCGGTTTTCCTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058518-exon-scaffold_311-1575043694:262254..262451 | TCONS_00058518-exon-scaffold_311-1575043694:262254..262451 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1575043694:261102..261238 | TCONS_00058518-exon-scaffold_311-1575043694:261102..261238 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1575043694:259923..260035 | TCONS_00058518-exon-scaffold_311-1575043694:259923..260035 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1575043694:259076..259360 | TCONS_00058518-exon-scaffold_311-1575043694:259076..259360 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1575043694:257223..257944 | TCONS_00058518-exon-scaffold_311-1575043694:257223..257944 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1575043694:255704..256384 | TCONS_00058518-exon-scaffold_311-1575043694:255704..256384 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1510915933:262254..262451 | TCONS_00058518-exon-scaffold_311-1510915933:262254..262451 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1510915933:261102..261238 | TCONS_00058518-exon-scaffold_311-1510915933:261102..261238 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1510915933:259923..260035 | TCONS_00058518-exon-scaffold_311-1510915933:259923..260035 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1510915933:259076..259360 | TCONS_00058518-exon-scaffold_311-1510915933:259076..259360 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1510915933:257223..257944 | TCONS_00058518-exon-scaffold_311-1510915933:257223..257944 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1510915933:255704..256384 | TCONS_00058518-exon-scaffold_311-1510915933:255704..256384 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1491911889:262254..262451 | TCONS_00058518-exon-scaffold_311-1491911889:262254..262451 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1491911889:261102..261238 | TCONS_00058518-exon-scaffold_311-1491911889:261102..261238 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1491911889:259923..260035 | TCONS_00058518-exon-scaffold_311-1491911889:259923..260035 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1491911889:259076..259360 | TCONS_00058518-exon-scaffold_311-1491911889:259076..259360 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1491911889:257223..257944 | TCONS_00058518-exon-scaffold_311-1491911889:257223..257944 | Clytia hemisphaerica | exon |
TCONS_00058518-exon-scaffold_311-1491911889:255704..256384 | TCONS_00058518-exon-scaffold_311-1491911889:255704..256384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_311 | supercontig | scaffold_311:255704..262451 - |
Blast
The following BLAST results are available for this feature:
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