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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058533 ID=TCONS_00058533|Name=TCONS_00058533|organism=Clytia hemisphaerica|type=transcript|length=434bp
TGTGTTGtttgaaatcaatttcattATTGCTCATCACACGTCTTTTACAA
ACACTGCACGACATAAGACGACATTTATCGTTCCAGCAACGGAAGATTCC
TTTATCGGCGACGTCGTAAATAAAGATACTTTTACATTCTCTGCAGATAT
CGAATCTTTCTCGGTTTCTTCCATCCTTTTGTCGAGCTCGAAGGTAATTG
GTAAAGATCTTTCTACAGATTTTTTCTTTGAGGTAGTTTGGTAGTATGTT
GAGATCTTTAATCATAAGGACCTTGTTACACTTTGGACAGTGGATTGGTT
CGTGTATCTTTTGAACTATAACTTCTTGGTTTTCCAATGTTCCATTGATA
TACCATTTCAAGCATTCCACACAAAAGGTACATCCACATAAAAGCAATCG
AACTCCAACGTCACCAACTATCGCTTCATTCTCT Run BLAST on NCBI transcript from alignment at scaffold_311:456459..457729- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058533 ID=TCONS_00058533|Name=TCONS_00058533|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at scaffold_311:456459..457729- (Clytia hemisphaerica)
TGTGTTGTTTGAAATCAATTTCATTATTGCTCATCACACGTCTTTTACAA
ACACTGCACGACATAAGACGACATTTATCGTTCCAGCAACGGAAGATTCC
TTTATCGGCGACGTCGTAAATAAAGATACTTTTACATTCTCTGCAGATAT
CGAATCTTTCTCGGTTTCTTCCATCCTTTTGTCGAGCTCGAAGGTAATTG
GTAAAGATCTTTCTACAGATTTTTTCTTTGAGGTAGTTTGGTAGTATGTT
GAGATCTTTAATCATAAGGACCTTGTTACACTTTGGACAGTGGATTGGTT
CGTGTATCTTTTGAACTATAAATTGAAGGAAAAGGAAATCAGAATATTTC
AAAGAAGTTTTTTTTTGGTAAGCACAATGCTTATAAACATATCCAGGCTT
AAGTCTTTGAACAAATTGTACATCGCTTATTAAGCATTATCACATTATAG
ATCTTATCGGAGTTTTTTATTTTTCTAAAAAAAGCGATGCATTGTGGGAT
TGTTTCGGGAGTATAATAGAAATCTCTTAGGGATTCCTAGAGGGAATTCT
ATTGTAATACCCCGAAACAATCCCATAATGCATCGCTTTTTAAGAAAAAT
CAAAAGCTCCGATAAGATTTATCGAATTAACCTGTAACCAGTTTCTCAAC
ACCCCTGTGTTACAGACCTGAGGGGAGCCCAGCCCCATACTGGAAAATTT
GGCAAAAATTTCGTCCCCGGTTGGAAGAATACTACTTTCATTTCAGCCCC
ATTTGAAATTGAATGTAAAAAATTACACTCCGAAATCATCCGTGTACTGG
ATTTTTAAGCTTGAAACAATAGAATTTTTATCCGTATTATTGGTATTTCG
ATAGAAAGTTTTATCGCCACTGGTGGGGAAAGTTTTTCCCCGGAGCTGTG
AGACAAGGGTGTGTTGACGAGTTTTATGTGTGAATTTTCAAAGCATTTAA
CTTCCAAATTACAAAGAAGTATGCACGATATGTAAAGATTTGGACAAGAT
TTAGATCGTGTAATTAAATTCTTAACCGTTAACGAGTTTGTTGCGAGCTG
GACCCTTAACGGGAACAAAGAGGAGGGAAAAAAGAAAAAGAAAATATTTT
ACGACGCTTATTGGATAATTTAACAAAAAATTATCTCCAAACTACTGTAT
TTCCATACCTTCTTGGTTTTCCAATGTTCCATTGATATACCATTTCAAGC
ATTCCACACAAAAGGTACATCCACATAAAAGCAATCGAACTCCAACGTCA
CCAACTATCGCTTCATTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058533-exon-scaffold_311-1575043694:457409..457729 | TCONS_00058533-exon-scaffold_311-1575043694:457409..457729 | Clytia hemisphaerica | exon |
| TCONS_00058533-exon-scaffold_311-1575043694:456459..456571 | TCONS_00058533-exon-scaffold_311-1575043694:456459..456571 | Clytia hemisphaerica | exon |
| TCONS_00058533-exon-scaffold_311-1510915933:457409..457729 | TCONS_00058533-exon-scaffold_311-1510915933:457409..457729 | Clytia hemisphaerica | exon |
| TCONS_00058533-exon-scaffold_311-1510915933:456459..456571 | TCONS_00058533-exon-scaffold_311-1510915933:456459..456571 | Clytia hemisphaerica | exon |
| TCONS_00058533-exon-scaffold_311-1491911889:457409..457729 | TCONS_00058533-exon-scaffold_311-1491911889:457409..457729 | Clytia hemisphaerica | exon |
| TCONS_00058533-exon-scaffold_311-1491911889:456459..456571 | TCONS_00058533-exon-scaffold_311-1491911889:456459..456571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:456459..457729 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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