TCONS_00058602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058602
Unique NameTCONS_00058602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058602 ID=TCONS_00058602|Name=TCONS_00058602|organism=Clytia hemisphaerica|type=transcript|length=354bp
CAAAAACTAAgtgtttaaaatatttacaagtGAAATCCACTTTTATAAGC
AGTTAAAATAGTAGCAgatttttatggtaaaaaaaattatccttgattat
atcaaaacaaaaaaggaacCAATTATGCTTACAGTGAGCAATTCTTTAAG
AAAAGTGACAGGAAAAATGACGAATACGATTAAAATACAATTGAAACCAC
TTTGACGCTTTCGATTGAAAACGAGGATAGAGAAATTTAAAGTTCTCTCT
TTAATTACAAGAAATTCAAAGATGCTCTATTATGCTCTAATGTATATATC
ATTAATAAACTATAAATGATTTTTATATACTCCATATAAAAACACCAAGT
ATCG
Run BLAST on NCBI

transcript from alignment at scaffold_311:472299..472652

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058602 ID=TCONS_00058602|Name=TCONS_00058602|organism=Clytia hemisphaerica|type=transcript|length=354bp|location=Sequence derived from alignment at scaffold_311:472299..472652 (Clytia hemisphaerica)
CGATACTTGGTGTTTTTATATGGAGTATATAAAAATCATTTATAGTTTAT
TAATGATATATACATTAGAGCATAATAGAGCATCTTTGAATTTCTTGTAA
TTAAAGAGAGAACTTTAAATTTCTCTATCCTCGTTTTCAATCGAAAGCGT
CAAAGTGGTTTCAATTGTATTTTAATCGTATTCGTCATTTTTCCTGTCAC
TTTTCTTAAAGAATTGCTCACTGTAAGCATAATTGgttccttttttgttt
tgatataatcaaggataattttttttaccataaaaatcTGCTACTATTTT
AACTGCTTATAAAAGTGGATTTCacttgtaaatattttaaacacTTAGTT
TTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036911XLOC_036911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058602-exon-scaffold_311-1491911889:472299..472652TCONS_00058602-exon-scaffold_311-1491911889:472299..472652Clytia hemisphaericaexon
TCONS_00058602-exon-scaffold_311-1510915933:472299..472652TCONS_00058602-exon-scaffold_311-1510915933:472299..472652Clytia hemisphaericaexon
TCONS_00058602-exon-scaffold_311-1575043694:472299..472652TCONS_00058602-exon-scaffold_311-1575043694:472299..472652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:472299..472652 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.314567	0	0.692584	3.38444	1.74145	0.730601	2.35034	2.02109	2.63593	2.7702	0.552265	0.376523	1.87405	1.51031	1.66918	0.692328	1.15131	1.54638	0	0.234449	8.88382	12.3138	16.6403	11.6198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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