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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058454 ID=TCONS_00058454|Name=TCONS_00058454|organism=Clytia hemisphaerica|type=transcript|length=316bp
CCAATCACAAATCCAAGTCACAACATCTGCTGAAAATAATACACCAACCA
AACTGTCAAGGAAACATAAAAAGAAGAGGAAAGTTGATACAACGACTTTT
CTTGGATCAGATGAGGAACATGAAGAATCAACTGGAACTGCAGAAGAAAC
AATACCCGAAGAAACCCCACCCAGACCCAAAAAGACGTCTACTCCTCTCC
CATCACCCTGCAATCACGACGCAGAATTAAAGAAAGCAAATAAAAACCTT
TGTACGCAAATCAGTCAAAATTGCCCTGGAGGATGGAATGAACTGGGACC
TTAGTGATGGTAAAAG Run BLAST on NCBI transcript from alignment at scaffold_311:599098..601276+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058454 ID=TCONS_00058454|Name=TCONS_00058454|organism=Clytia hemisphaerica|type=transcript|length=2179bp|location=Sequence derived from alignment at scaffold_311:599098..601276+ (Clytia hemisphaerica)
CCAATCACAAATCCAAGTCACAACATCTGCTGAAAATAATACACCAACCA
AACTGTCAAGGAAACATAAAAAGAAGAGGAAAGTTGATACAACGACTTTT
CTTGGATCAGATGAGGAACATGAAGAATCAACTGGAACTGCAGAAGAAAC
AATACCCGAAGAAACCCCACCCAGACCCAAAAAGACGTCTACTCCTCTCC
CATCACCCTGCAATCACGACGCAGAATTAAAGAAAGCAAATAAAAGTATG
TTTTGCACTTATTTTTATAGCTGGACTTAAATTGAGTATCTATTCATTGT
AGTCTTAAGGGTTCccagcggtcagggaaaacctggaaaagtcagggaag
ttttgaaaaatctctcaAAAGTCAGATCCATCTATTGTAAAACTGATAAG
GGTGTTATTGAAATGCGCGATTATTTTTTTACTACATCATAAAAAAAGTA
CTGTTTTTAGTCAgggaaaaaaggtctattttcatCTTGAGCCAGGGAAA
ATCTAGCTTTTTTCAGCACTTTTGTCAGGGAAAAAGGGTGTATTTTTCac
caaaagtcagggaaaatacCTCTGGAGGAACTGCTGGGAACCTAAgtcta
tttttttttggaatccttgTATTCTCTTTGGCCCATCCCATAATTTGCCT
GTATAAGAGGGGTGGAAAATTCAAGGCAATTGGATCAAAAATGGCAAAGA
AAAGGGAATTTTAAGACCTTTTGCATAAATTTATGTGttttccttgaaat
tttcaatGACCACtggaataaaaaatttatttccaaGGCTAGAACAAATT
CTAAAATGTATGTCATCTGAAGAGGGTTAATggaaattttctgaaaaggC
ACTTTCAGATACGTCGAGATCGATATCGGCGTATACGGCGAGTATGTCTA
ACTGCGTCCGCTGAAggtcaaaaagggcactttttctcctatactttcat
gaaaaagcctgattttacaatattttccacAATTTTTGAAGGGCAGGcat
aaaaaatgtctttgtatGTTATTATATAATTTGAGCTTGTGCAGGGTCTg
ttaaaaagttaaatatcaAATTGGATTTTGCCATTTTCAGCTTACAAATa
ctgggcttttccagaaaatgtttgTACACCCTGTCACTATAAGACTGACT
GACTAGAGTAAGGGTGGAGGGATATGGTTGTCTGGCGATAgcgaaaatca
ttaaaatttccCTTGTCCGGAGGTAAAACCTGTTGTCACTTTaaagtgtt
ttcactgtttgtcagtgaggcggcaatcacaaatatcttcatttcacGTC
ATTTCATGCCtgaaaagtgagtcggtcggtcggtcgggttcgggtttttt
gaaaatccgaCAAATTTGCCGACTCTCTGACTCagatttttacaattttc
atgagtCGGTCGGGTGAtgcgaaacaaagatatttgtggTTGCCGcctga
ggtaaatctatttcaaagaccagaaaagtttgtttacattcattCAACTT
TTACATGCCCCTTTAACTTTTTCGTGCATTTCCGGTACAAGGCCTAGTCA
TGGTACATAAAGATGTGAtacttttttggaaatttggcAAAGTTATTTAG
CCTTTCTAATCATAATGTCAGTTGACTGAAAAGGGCTGGGTGAAAACCTG
TCAACAAAGTCATTCTTGTTTGCAAAAAGGTTATTTTTTGGACTCAACCA
TAACAAAACTCAAACTTGTGAAGCACAATGTTTTGTCTATTTAAGTTATT
TGGTAAAGATCAGAAATTTAGTAAGTTTATATAATTTCTTAATTTCAGAA
ATCGAAGAGTTGAGTCAAAAATGCAAGAGCACTGAGAAAAAATGTGAGAC
CTTTGAAAAGAGATGTGAAACCTTGGAGAGCAAGATAGAGAATTTGCAGT
CTACtagaatcaaaaagaaaaaactcaaagCTTCAAATAAAGCAAAGGTT
TGTTGTTGATGTTATTATTAGTAATTTAGagttattttttttgtcaacgG
TGATAAGATTAAAGAGATTAAGGCATGGCAGCCAAGAGAAATTCCAATAG
TCAGCTCTCTAacagtttttattttgtaaaatataacattttctttttct
tattgtAGACCTTTGTACGCAAATCAGTCAAAATTGCCCTGGAGGATGGA
ATGAACTGGGACCTTAGTGATGGTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058454-exon-scaffold_311-1491911889:599098..599342 | TCONS_00058454-exon-scaffold_311-1491911889:599098..599342 | Clytia hemisphaerica | exon |
| TCONS_00058454-exon-scaffold_311-1510915933:599098..599342 | TCONS_00058454-exon-scaffold_311-1510915933:599098..599342 | Clytia hemisphaerica | exon |
| TCONS_00058454-exon-scaffold_311-1575043694:599098..599342 | TCONS_00058454-exon-scaffold_311-1575043694:599098..599342 | Clytia hemisphaerica | exon |
| TCONS_00058454-exon-scaffold_311-1491911889:601206..601276 | TCONS_00058454-exon-scaffold_311-1491911889:601206..601276 | Clytia hemisphaerica | exon |
| TCONS_00058454-exon-scaffold_311-1510915933:601206..601276 | TCONS_00058454-exon-scaffold_311-1510915933:601206..601276 | Clytia hemisphaerica | exon |
| TCONS_00058454-exon-scaffold_311-1575043694:601206..601276 | TCONS_00058454-exon-scaffold_311-1575043694:601206..601276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:599098..601276 + |
Blast
The following BLAST results are available for this feature:
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