TCONS_00058459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058459
Unique NameTCONS_00058459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058459 ID=TCONS_00058459|Name=TCONS_00058459|organism=Clytia hemisphaerica|type=transcript|length=1362bp
CCTAAATTTATTGACGAATAGAAAGAAAAGTTTTACCTATATCCTCTTGC
ACTATTCCTTGGGGGTATCTTGTAcataaaaacttcatttttaacACACA
GTATTCTTTCATAATCAGTCATGATTGATGGGTGATTGATTTTTCCTACA
ACATACAAGGCGACAAGGTGCTACGCAGTCCTCCCagtgtttttgttgtt
tcttcgaTCTTCAAATCCAATCCGGACCGAACGAAAACACTCCGGATTCG
ATGACTATGGACACACACCATACAATAAATTTCGATCATATAAGGTCCGA
CACGTTTACTAGTAACCTAGTTGCATTGACCACGCCAATTGTTTATATCA
AAAAGTGGCATGGCGTaaaaaaatcactgaaaatttttaaagtgtGTTGT
GGAGAAAGGCaagtgaagaaaaagaagaggaaCTTGGACATAAGGCAAAG
CTGAGGGTCAATCAAACATGGGTGAGCCACCACCATTTGACCCATGTGAG
TGTATCTTTAGCCCTGCAGGTGCGATGCGTAGATTGATTTCTCTTCTACG
ACAATCACAAAACTACTGTACTGATGACCAATGTTTTGGGAATCCACCCG
GCCCAAATCAAAATGAAGATACTGGGATGACAATGTTTATGATGTTTATT
GCATGGGTTGTTGTTGCTGCTGCTTTGTATTTATTCCGTCCAACAAGTGT
TCGTGATGGATCTAAACCAGCACGACATGATAACAATGATGATCATCCGG
ACAGAAATGATCCTCACAATCCCCCTCCAGTTATgtgaattgagaaaaaa
attttgggttttgttttcataaaacatatattttaatgttttagataatg
aaacttttttgttgtttgtagatAATTTTTAGTTATCAACTCTTAAGGGC
ATTTGCAACGGTGTCAGTGACTTTAGCACTCTTTGGGGCTAGCGTGAAAG
TTTTGTATTAGAAACAATTCTAAAGCATTGAAGTAGCTGTTACTAACAca
taaaaagctcaatttttattATCTATAATGAAATTGCAAAAGACTCAAGA
AAAAGTTACCTCATTTACATTTTGGGAATAATCACACAGTATATGATGCA
TACACATAAATTATATCAACCATTCaccatttattttatttttttcgcta
tggaaaaatttatttatgTATTGTTTTTAAGTAAGTTCTTTTATAGTCTC
CTTttcgttttaattttcaaaaagcattccATTTTTATATTGGCGCTGAC
ACTATTCTGACGTAAAAGCAAGCTGAATAAACTTCTgtgtattttctttg
tttcgaTGACACTTGCACTATAATTATATCTACTTGGTTTAAGGTatata
gccggggggggg
Run BLAST on NCBI

protein sequence of TCONS_00058459-protein

>TCONS_00058459-protein ID=TCONS_00058459-protein|Name=TCONS_00058459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MGEPPPFDPCECIFSPAGAMRRLISLLRQSQNYCTDDQCFGNPPGPNQNE
DTGMTMFMMFIAWVVVAAALYLFRPTSVRDGSKPARHDNNDDHPDRNDPH
NPPPVM
Run BLAST on NCBI

transcript from alignment at scaffold_311:655939..659819+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058459 ID=TCONS_00058459|Name=TCONS_00058459|organism=Clytia hemisphaerica|type=transcript|length=3881bp|location=Sequence derived from alignment at scaffold_311:655939..659819+ (Clytia hemisphaerica)
CCTAAATTTATTGACGAATAGAAAGAAAAGTTTTACCTATATCCTCTTGC ACTATTCCTTGGGGGTATCTTGTAcataaaaacttcatttttaacACACA GTATTCTTTCATAATCAGTCATGATTGATGGGTGATTGATTTTTCCTACA ACATACAAGGCGACAAGGTGCTACGCAGTCCTCCCagtgtttttgttgtt tcttcgaTCTTCAAATCCAATCCGGACCGAACGAAAACACTCCGGATTCG ATGACTATGGACACACACCATACAATAAATTTCGATCATATAAGGTCCGA CACGTTTACTAGTAACCTAGTTGCATTGACCACGCCAATTGTTTATATCA AAAAGTGGCATGGCGTaaaaaaatcactgaaaatttttaaagtgtGTTGT GGAGAAAGGCaagtgaagaaaaagaagaggaaCTTGGACATAAGGCAAAG CTGAGGGGTAATTGACATTATATGTTGAATTTAAAGCCAAGTTAAACAGT TACGAAGCTGCTTGATCAAAAATTTTAGACCATTTGtgtcatttttttat tctttcaacattttcaaaatgtcagGAGGCAGgggttaaatcaaaattta cggTGTCGACcatcatagaccttttttcaaagaggccaccctgttgaata attatgtagtccagcagaaaaacaatgatacacccATGCAtgattattac aatatgcatgaaacagtaattatccattgctgtatcattgtttgtatggc tgctggactacataattattcaacagggttgtctctttgaaaaaaggtct attgcctCTGCATCATTGTGTACATTTAGAAAGAAAACATATCCATTATC TATAAGACAATTGGAGTAGGGTGTGCTTTTTTGTTTTAGCAATTTGTGTT AACAATGGACCTGCCTTGCGCTTATCACACTGCAGACCCACGACACGGCT GACAGTAGTTAAAAGCTTATATTGCCCGAAATTTTCTGGGCCACTTGGCA ATTTTGAGCTTAAAAGTCCTGATGAACACAGACCAAACTTGCCCCATACT CTGGGGCCTATCTAGGCCAGGTTTTCGAgggcaaaaatccaaaattttgt gGCCGAAACCTCTCTGGCTGCCTGAACCATTAATGCATTTATTAGGACAT TAATATTAGAACATTGAAATGTTAGAACATTAAAATGTTAGAACATTAAA ATGTTAGAGCATTAAAATGTTTGGGCCAAAAGAAAGATGACACAACATGA CCGTAAATGTTTGGGGTATGTTCAGAGCCATGGGTCATTCACGCTGCCAT GTTGAATGATTTAAAACTCCAGCAAAACAATTACAAGATGATGAATAATA TTAGTTAAAGCATGTACCAAACATTTTGTTGAGAATATGTCTTTCATCTT TAAAATAATCTTTGTCTTTTGACGTGATATATACCGTAAGTTGATTTAAT GTTGATATCCCTCTTGATTTCAACACCCTTCTTCAGAGACAGGAATAATT TGAAGGTCTGAATCGCTaatggaaactatttttcttttcttagcaatcaa agaggaaaaattttttgtttatcagAGTGATCCCAAAAGGTGTCgtggta tagtggacatcaaccttgattcctgtacaggaCACAAAGGGTTGATTCCC ACTCACAatggttcacttggcaagtgaatgaaccttcgcccgggtcaacc catgccatgtgagagGAATTGGGTAGTAAGTAAAAGGTGCTGATGAGATG CTTACTCAAAGTATCTATAGTTGTGAGAATAGGCTCCAGAacctcctgta actcaaccacAATAGATAAAtagaccttcctattattcctatctctaaaa agggtgttgaaattaaaaagggatgtcaacatttagaccaacttacggta gagAATTCCCAAAAGATATCATGaaaatctcaaattttctaTGACAGTCA AGATATGAGCACAGATACTATGCTAGGTCTCGTCTGGTGACCAAGTCCAT TACCAAAGCCATTTCCATCATAAAATTCAGCAAACAGGTTTTCTTCACCA GCTATCCAGGCTATACCAAATTAACACTTAGGGATATGCTCAAATCATAC AATCACCGAGAAGAAATAACAACATAACTATTTATAGTTTTTCTTCCATT ACATTTTCTATTATCAATTTAGGCTAAGCAACTGATGACTGGTTATTTAA GCGATGATGTTTGTCTAATTAACTGATCTGGCCATAAACAACCAATGATT GGGTATTTGAAAATATCTGAATGATTAAGTCCTCATCAAACTGAAAttat tttaaggatttttgcttcgtgccaaaattagttattgCAAAAACAAGGTC CATTAAGGTATACCATGAAAAAATGCTACTGTTATGATAGCTTCAAAATT AAGATATTCCCAAAACCCTTCTGTATGTAACGCAACATGTCTTGTACGTA CAATATCTCCTCAGCGGTTTACTTTctggaaaaaatatttaaaccaatca gtgctgcaaataacggccggtgactGGTATTTACCCGTCATTTTGTAGTA TCTACCGGCCATTATTAAGCACAGTTTTTCATTTTGCtcggttaaaattt gaagattagaggcttagataaatacttaatagcgcttctaaaattgaaaa ttgaaagaggaacagtttttaaattaaaataggTGTTCAGCCAATCTTAT AATCCAATAAGTCAATCTGTAATAACAAACTACAAAGATGGTTCCGCCAG ACCCCCTGCTTGTTACACACGAAAAATTACCGACCAACTGAAATTTCCCT ATATTTGCAGCACTGTCAATCTGTTATCCATTAAAGACATTTGTTTGAAC CATCTGAACAGATCTCAATAATCCCTGTTGACAAAACTATGCATGTTgat gatgatatttttttgctACTCTACCAGGTTTGATATATAGGatctaattt tttgtttatttctcatTTCACTTCAGTCAATCAAACATGGGTGAGCCACC ACCATTTGACCCATGTGAGTGTATCTTTAGCCCTGCAGGTGCGATGCGTA GATTGATTTCTCTTCTACGACAATCACAAAACTACTGTACTGATGACCAA TGTTTTGGGAATCCACCCGGCCCAAATCAAAATGAAGATACTGGGATGAC AATGTTTATGATGTTTATTGCATGGGTTGTTGTTGCTGCTGCTTTGTATT TATTCCGTCCAACAAGTGTTCGTGATGGATCTAAACCAGCACGACATGAT AACAATGATGATCATCCGGACAGAAATGATCCTCACAATCCCCCTCCAGT TATgtgaattgagaaaaaaattttgggttttgttttcataaaacatatat tttaatgttttagataatgaaacttttttgttgtttgtagatAATTTTTA GTTATCAACTCTTAAGGGCATTTGCAACGGTGTCAGTGACTTTAGCACTC TTTGGGGCTAGCGTGAAAGTTTTGTATTAGAAACAATTCTAAAGCATTGA AGTAGCTGTTACTAACAcataaaaagctcaatttttattATCTATAATGA AATTGCAAAAGACTCAAGAAAAAGTTACCTCATTTACATTTTGGGAATAA TCACACAGTATATGATGCATACACATAAATTATATCAACCATTCaccatt tattttatttttttcgctatggaaaaatttatttatgTATTGTTTTTAAG TAAGTTCTTTTATAGTCTCCTTttcgttttaattttcaaaaagcattccA TTTTTATATTGGCGCTGACACTATTCTGACGTAAAAGCAAGCTGAATAAA CTTCTgtgtattttctttgtttcgaTGACACTTGCACTATAATTATATCT ACTTGGTTTAAGGTatatagccggggggggg

Coding sequence (CDS) from alignment at scaffold_311:655939..659819+

>TCONS_00058459 ID=TCONS_00058459|Name=TCONS_00058459|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_311:655939..659819+ (Clytia hemisphaerica)
ATGGGTGAGCCACCACCATTTGACCCATGTGAGTGTATCTTTAGCCCTGC
AGGTGCGATGCGTAGATTGATTTCTCTTCTACGACAATCACAAAACTACT
GTACTGATGACCAATGTTTTGGGAATCCACCCGGCCCAAATCAAAATGAA
GATACTGGGATGACAATGTTTATGATGTTTATTGCATGGGTTGTTGTTGC
TGCTGCTTTGTATTTATTCCGTCCAACAAGTGTTCGTGATGGATCTAAAC
CAGCACGACATGATAACAATGATGATCATCCGGACAGAAATGATCCTCAC
AATCCCCCTCCAGTTATgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036837XLOC_036837Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058459-proteinTCONS_00058459-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058459-exon-scaffold_311-1491911889:655939..656395TCONS_00058459-exon-scaffold_311-1491911889:655939..656395Clytia hemisphaericaexon
TCONS_00058459-exon-scaffold_311-1510915933:655939..656395TCONS_00058459-exon-scaffold_311-1510915933:655939..656395Clytia hemisphaericaexon
TCONS_00058459-exon-scaffold_311-1575043694:655939..656395TCONS_00058459-exon-scaffold_311-1575043694:655939..656395Clytia hemisphaericaexon
TCONS_00058459-exon-scaffold_311-1491911889:658915..659819TCONS_00058459-exon-scaffold_311-1491911889:658915..659819Clytia hemisphaericaexon
TCONS_00058459-exon-scaffold_311-1510915933:658915..659819TCONS_00058459-exon-scaffold_311-1510915933:658915..659819Clytia hemisphaericaexon
TCONS_00058459-exon-scaffold_311-1575043694:658915..659819TCONS_00058459-exon-scaffold_311-1575043694:658915..659819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:655939..659819 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.4958 27.8349 10.4007 8.18337 13.8119 10.923 24.3636 23.9297 40.0566 32.0475 41.963 37.9852 49.2319 49.6608 18.9084 15.6431 15.3734 16.6289 49.2493 57.729 31.053 29.0014 19.1618 24.4729 24.3617 22.2078 28.1307 21.0008 13.6409 16.1158
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020309Uncharacterised_CD034/YQF4
Blast
BLAST of TCONS_00058459 vs. Swiss-Prot (Human)
Match: SIM14 (Small integral membrane protein 14 OS=Homo sapiens GN=SMIM14 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.050e-21
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  486 FDPCECIFSPAGAMRRLISLLRQSQNYCTDDQCFGNPPGPNQNEDTGMTMFMMFIAWVVVAAALYLFRPTSVRDGSKPA 722
            FDPCEC+ S   AMRRLI+LLRQSQ+YCTD +C    PGP+   D G+++ M+ +AW+V+A  L+L RP ++R  S P 
Sbjct:    6 FDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSG--DNGISVTMILVAWMVIALILFLLRPPNLRGSSLPG 82          
The following BLAST results are available for this feature:
BLAST of TCONS_00058459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIM142.050e-2151.90Small integral membrane protein 14 OS=Homo sapiens... [more]
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