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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058459 ID=TCONS_00058459|Name=TCONS_00058459|organism=Clytia hemisphaerica|type=transcript|length=1362bp
CCTAAATTTATTGACGAATAGAAAGAAAAGTTTTACCTATATCCTCTTGC
ACTATTCCTTGGGGGTATCTTGTAcataaaaacttcatttttaacACACA
GTATTCTTTCATAATCAGTCATGATTGATGGGTGATTGATTTTTCCTACA
ACATACAAGGCGACAAGGTGCTACGCAGTCCTCCCagtgtttttgttgtt
tcttcgaTCTTCAAATCCAATCCGGACCGAACGAAAACACTCCGGATTCG
ATGACTATGGACACACACCATACAATAAATTTCGATCATATAAGGTCCGA
CACGTTTACTAGTAACCTAGTTGCATTGACCACGCCAATTGTTTATATCA
AAAAGTGGCATGGCGTaaaaaaatcactgaaaatttttaaagtgtGTTGT
GGAGAAAGGCaagtgaagaaaaagaagaggaaCTTGGACATAAGGCAAAG
CTGAGGGTCAATCAAACATGGGTGAGCCACCACCATTTGACCCATGTGAG
TGTATCTTTAGCCCTGCAGGTGCGATGCGTAGATTGATTTCTCTTCTACG
ACAATCACAAAACTACTGTACTGATGACCAATGTTTTGGGAATCCACCCG
GCCCAAATCAAAATGAAGATACTGGGATGACAATGTTTATGATGTTTATT
GCATGGGTTGTTGTTGCTGCTGCTTTGTATTTATTCCGTCCAACAAGTGT
TCGTGATGGATCTAAACCAGCACGACATGATAACAATGATGATCATCCGG
ACAGAAATGATCCTCACAATCCCCCTCCAGTTATgtgaattgagaaaaaa
attttgggttttgttttcataaaacatatattttaatgttttagataatg
aaacttttttgttgtttgtagatAATTTTTAGTTATCAACTCTTAAGGGC
ATTTGCAACGGTGTCAGTGACTTTAGCACTCTTTGGGGCTAGCGTGAAAG
TTTTGTATTAGAAACAATTCTAAAGCATTGAAGTAGCTGTTACTAACAca
taaaaagctcaatttttattATCTATAATGAAATTGCAAAAGACTCAAGA
AAAAGTTACCTCATTTACATTTTGGGAATAATCACACAGTATATGATGCA
TACACATAAATTATATCAACCATTCaccatttattttatttttttcgcta
tggaaaaatttatttatgTATTGTTTTTAAGTAAGTTCTTTTATAGTCTC
CTTttcgttttaattttcaaaaagcattccATTTTTATATTGGCGCTGAC
ACTATTCTGACGTAAAAGCAAGCTGAATAAACTTCTgtgtattttctttg
tttcgaTGACACTTGCACTATAATTATATCTACTTGGTTTAAGGTatata
gccggggggggg Run BLAST on NCBI protein sequence of TCONS_00058459-protein >TCONS_00058459-protein ID=TCONS_00058459-protein|Name=TCONS_00058459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MGEPPPFDPCECIFSPAGAMRRLISLLRQSQNYCTDDQCFGNPPGPNQNE
DTGMTMFMMFIAWVVVAAALYLFRPTSVRDGSKPARHDNNDDHPDRNDPH
NPPPVM Run BLAST on NCBI transcript from alignment at scaffold_311:655939..659819+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058459 ID=TCONS_00058459|Name=TCONS_00058459|organism=Clytia hemisphaerica|type=transcript|length=3881bp|location=Sequence derived from alignment at scaffold_311:655939..659819+ (Clytia hemisphaerica)
CCTAAATTTATTGACGAATAGAAAGAAAAGTTTTACCTATATCCTCTTGC
ACTATTCCTTGGGGGTATCTTGTAcataaaaacttcatttttaacACACA
GTATTCTTTCATAATCAGTCATGATTGATGGGTGATTGATTTTTCCTACA
ACATACAAGGCGACAAGGTGCTACGCAGTCCTCCCagtgtttttgttgtt
tcttcgaTCTTCAAATCCAATCCGGACCGAACGAAAACACTCCGGATTCG
ATGACTATGGACACACACCATACAATAAATTTCGATCATATAAGGTCCGA
CACGTTTACTAGTAACCTAGTTGCATTGACCACGCCAATTGTTTATATCA
AAAAGTGGCATGGCGTaaaaaaatcactgaaaatttttaaagtgtGTTGT
GGAGAAAGGCaagtgaagaaaaagaagaggaaCTTGGACATAAGGCAAAG
CTGAGGGGTAATTGACATTATATGTTGAATTTAAAGCCAAGTTAAACAGT
TACGAAGCTGCTTGATCAAAAATTTTAGACCATTTGtgtcatttttttat
tctttcaacattttcaaaatgtcagGAGGCAGgggttaaatcaaaattta
cggTGTCGACcatcatagaccttttttcaaagaggccaccctgttgaata
attatgtagtccagcagaaaaacaatgatacacccATGCAtgattattac
aatatgcatgaaacagtaattatccattgctgtatcattgtttgtatggc
tgctggactacataattattcaacagggttgtctctttgaaaaaaggtct
attgcctCTGCATCATTGTGTACATTTAGAAAGAAAACATATCCATTATC
TATAAGACAATTGGAGTAGGGTGTGCTTTTTTGTTTTAGCAATTTGTGTT
AACAATGGACCTGCCTTGCGCTTATCACACTGCAGACCCACGACACGGCT
GACAGTAGTTAAAAGCTTATATTGCCCGAAATTTTCTGGGCCACTTGGCA
ATTTTGAGCTTAAAAGTCCTGATGAACACAGACCAAACTTGCCCCATACT
CTGGGGCCTATCTAGGCCAGGTTTTCGAgggcaaaaatccaaaattttgt
gGCCGAAACCTCTCTGGCTGCCTGAACCATTAATGCATTTATTAGGACAT
TAATATTAGAACATTGAAATGTTAGAACATTAAAATGTTAGAACATTAAA
ATGTTAGAGCATTAAAATGTTTGGGCCAAAAGAAAGATGACACAACATGA
CCGTAAATGTTTGGGGTATGTTCAGAGCCATGGGTCATTCACGCTGCCAT
GTTGAATGATTTAAAACTCCAGCAAAACAATTACAAGATGATGAATAATA
TTAGTTAAAGCATGTACCAAACATTTTGTTGAGAATATGTCTTTCATCTT
TAAAATAATCTTTGTCTTTTGACGTGATATATACCGTAAGTTGATTTAAT
GTTGATATCCCTCTTGATTTCAACACCCTTCTTCAGAGACAGGAATAATT
TGAAGGTCTGAATCGCTaatggaaactatttttcttttcttagcaatcaa
agaggaaaaattttttgtttatcagAGTGATCCCAAAAGGTGTCgtggta
tagtggacatcaaccttgattcctgtacaggaCACAAAGGGTTGATTCCC
ACTCACAatggttcacttggcaagtgaatgaaccttcgcccgggtcaacc
catgccatgtgagagGAATTGGGTAGTAAGTAAAAGGTGCTGATGAGATG
CTTACTCAAAGTATCTATAGTTGTGAGAATAGGCTCCAGAacctcctgta
actcaaccacAATAGATAAAtagaccttcctattattcctatctctaaaa
agggtgttgaaattaaaaagggatgtcaacatttagaccaacttacggta
gagAATTCCCAAAAGATATCATGaaaatctcaaattttctaTGACAGTCA
AGATATGAGCACAGATACTATGCTAGGTCTCGTCTGGTGACCAAGTCCAT
TACCAAAGCCATTTCCATCATAAAATTCAGCAAACAGGTTTTCTTCACCA
GCTATCCAGGCTATACCAAATTAACACTTAGGGATATGCTCAAATCATAC
AATCACCGAGAAGAAATAACAACATAACTATTTATAGTTTTTCTTCCATT
ACATTTTCTATTATCAATTTAGGCTAAGCAACTGATGACTGGTTATTTAA
GCGATGATGTTTGTCTAATTAACTGATCTGGCCATAAACAACCAATGATT
GGGTATTTGAAAATATCTGAATGATTAAGTCCTCATCAAACTGAAAttat
tttaaggatttttgcttcgtgccaaaattagttattgCAAAAACAAGGTC
CATTAAGGTATACCATGAAAAAATGCTACTGTTATGATAGCTTCAAAATT
AAGATATTCCCAAAACCCTTCTGTATGTAACGCAACATGTCTTGTACGTA
CAATATCTCCTCAGCGGTTTACTTTctggaaaaaatatttaaaccaatca
gtgctgcaaataacggccggtgactGGTATTTACCCGTCATTTTGTAGTA
TCTACCGGCCATTATTAAGCACAGTTTTTCATTTTGCtcggttaaaattt
gaagattagaggcttagataaatacttaatagcgcttctaaaattgaaaa
ttgaaagaggaacagtttttaaattaaaataggTGTTCAGCCAATCTTAT
AATCCAATAAGTCAATCTGTAATAACAAACTACAAAGATGGTTCCGCCAG
ACCCCCTGCTTGTTACACACGAAAAATTACCGACCAACTGAAATTTCCCT
ATATTTGCAGCACTGTCAATCTGTTATCCATTAAAGACATTTGTTTGAAC
CATCTGAACAGATCTCAATAATCCCTGTTGACAAAACTATGCATGTTgat
gatgatatttttttgctACTCTACCAGGTTTGATATATAGGatctaattt
tttgtttatttctcatTTCACTTCAGTCAATCAAACATGGGTGAGCCACC
ACCATTTGACCCATGTGAGTGTATCTTTAGCCCTGCAGGTGCGATGCGTA
GATTGATTTCTCTTCTACGACAATCACAAAACTACTGTACTGATGACCAA
TGTTTTGGGAATCCACCCGGCCCAAATCAAAATGAAGATACTGGGATGAC
AATGTTTATGATGTTTATTGCATGGGTTGTTGTTGCTGCTGCTTTGTATT
TATTCCGTCCAACAAGTGTTCGTGATGGATCTAAACCAGCACGACATGAT
AACAATGATGATCATCCGGACAGAAATGATCCTCACAATCCCCCTCCAGT
TATgtgaattgagaaaaaaattttgggttttgttttcataaaacatatat
tttaatgttttagataatgaaacttttttgttgtttgtagatAATTTTTA
GTTATCAACTCTTAAGGGCATTTGCAACGGTGTCAGTGACTTTAGCACTC
TTTGGGGCTAGCGTGAAAGTTTTGTATTAGAAACAATTCTAAAGCATTGA
AGTAGCTGTTACTAACAcataaaaagctcaatttttattATCTATAATGA
AATTGCAAAAGACTCAAGAAAAAGTTACCTCATTTACATTTTGGGAATAA
TCACACAGTATATGATGCATACACATAAATTATATCAACCATTCaccatt
tattttatttttttcgctatggaaaaatttatttatgTATTGTTTTTAAG
TAAGTTCTTTTATAGTCTCCTTttcgttttaattttcaaaaagcattccA
TTTTTATATTGGCGCTGACACTATTCTGACGTAAAAGCAAGCTGAATAAA
CTTCTgtgtattttctttgtttcgaTGACACTTGCACTATAATTATATCT
ACTTGGTTTAAGGTatatagccggggggggg Coding sequence (CDS) from alignment at scaffold_311:655939..659819+ >TCONS_00058459 ID=TCONS_00058459|Name=TCONS_00058459|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_311:655939..659819+ (Clytia hemisphaerica)
ATGGGTGAGCCACCACCATTTGACCCATGTGAGTGTATCTTTAGCCCTGC
AGGTGCGATGCGTAGATTGATTTCTCTTCTACGACAATCACAAAACTACT
GTACTGATGACCAATGTTTTGGGAATCCACCCGGCCCAAATCAAAATGAA
GATACTGGGATGACAATGTTTATGATGTTTATTGCATGGGTTGTTGTTGC
TGCTGCTTTGTATTTATTCCGTCCAACAAGTGTTCGTGATGGATCTAAAC
CAGCACGACATGATAACAATGATGATCATCCGGACAGAAATGATCCTCAC
AATCCCCCTCCAGTTATgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058459-exon-scaffold_311-1491911889:655939..656395 | TCONS_00058459-exon-scaffold_311-1491911889:655939..656395 | Clytia hemisphaerica | exon |
| TCONS_00058459-exon-scaffold_311-1510915933:655939..656395 | TCONS_00058459-exon-scaffold_311-1510915933:655939..656395 | Clytia hemisphaerica | exon |
| TCONS_00058459-exon-scaffold_311-1575043694:655939..656395 | TCONS_00058459-exon-scaffold_311-1575043694:655939..656395 | Clytia hemisphaerica | exon |
| TCONS_00058459-exon-scaffold_311-1491911889:658915..659819 | TCONS_00058459-exon-scaffold_311-1491911889:658915..659819 | Clytia hemisphaerica | exon |
| TCONS_00058459-exon-scaffold_311-1510915933:658915..659819 | TCONS_00058459-exon-scaffold_311-1510915933:658915..659819 | Clytia hemisphaerica | exon |
| TCONS_00058459-exon-scaffold_311-1575043694:658915..659819 | TCONS_00058459-exon-scaffold_311-1575043694:658915..659819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_311 | supercontig | scaffold_311:655939..659819 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR020309 | Uncharacterised_CD034/YQF4 |
Blast
BLAST of TCONS_00058459 vs. Swiss-Prot (Human)
Match: SIM14 (Small integral membrane protein 14 OS=Homo sapiens GN=SMIM14 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.050e-21 Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 3
Query: 486 FDPCECIFSPAGAMRRLISLLRQSQNYCTDDQCFGNPPGPNQNEDTGMTMFMMFIAWVVVAAALYLFRPTSVRDGSKPA 722
FDPCEC+ S AMRRLI+LLRQSQ+YCTD +C PGP+ D G+++ M+ +AW+V+A L+L RP ++R S P
Sbjct: 6 FDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSG--DNGISVTMILVAWMVIALILFLLRPPNLRGSSLPG 82
The following BLAST results are available for this feature:
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