TCONS_00058543 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058543
Unique Name	TCONS_00058543
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	806

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_311:711792..718133-

transcript sequence

>TCONS_00058543 ID=TCONS_00058543|Name=TCONS_00058543|organism=Clytia hemisphaerica|type=transcript|length=806bp
ATTTAACAAGCCTGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATT
AACAGAGTGGTCTATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAA
ATTGTTAATCGCAATATTTGGACAAAAGTTtcattttacaaaagaaatct
tgGCTTGTTTCGAACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAA
AATGGTTTTATCAAAGACAACAATGttcatttttactttatttttctgTA
GTATTATACAGCTACAAGGACGAAGAATCGATGTACAGCCAGCGAAACCG
AAACTTCAGTTGGAAAAAATCCTGAAGCCAATAATATGCCCTCAAGATGT
GGGATGTCGGTATAATCCAAAAACCGgaaaaactgaaattttctCGATAT
GTCGAAAGGATCTTTGCACCAAACATAaatgtccaaagcaaaagaagtGT
GTGGTTATGCTACTTGGTTGTGTTCCAGTCTGTATTCGTGATCAAAAACG
TCAGTAATATACACCCGATCGTCCTTACGTATCGttgttttaaccctatt
caacctaggcttttaggggcggtgcagaactaggggggggggcttttcct
gtaccaccccttaacttttgatctagtgggtctttttggatgaaatttgg
cacacaagatccttgtcacgtaaggtaactttcgacaagaaatttttttg
aagacgtccttcatcatgcccaaagtgagcaaaaaccggaaatttccttt
gttcttataaataactattgtattctaacaaaagctttagaaaaaagttg
cctgag

Run BLAST on NCBI

transcript from alignment at scaffold_311:711792..718133-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058543 ID=TCONS_00058543|Name=TCONS_00058543|organism=Clytia hemisphaerica|type=transcript|length=6342bp|location=Sequence derived from alignment at scaffold_311:711792..718133- (Clytia hemisphaerica)
ATTTAACAAGCCTGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATT
AACAGAGTGGTCTATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAA
ATTGTTAATCGCAATATTTGGACAAAAGTTTCATTTTACAAAAGAAATCT
TGGCTTGTTTCGAACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAA
AATGGTTTTATCAAAGACAACAATGTTCATTTTTACTTTATTTTTCTGTA
GTATTATACAGCTACAAGGTTGGTAGGTTTCTTTCTCGTGCTTATTATAA
TATCCCTTTACTTTAAAGTTAATTTCTATATATTTCGTATGACTTGGAAA
AATGATGCTATTTTTATGACAAATATGATAGGTCAAAAACTACTCGAAAT
GGGGAAAGCGTTCCAAATAGGATGAAGAAATTTCACTAAAATATTTATTC
AATATAAAGTTATGATACAAAGTTGATAAGTGATTGACCCCAAAAAACAG
CAGAAAACAGCGTTATTAGACGTCAATCAGCTTAAAACTTTGTTTGATAT
CTTGACTGAATAATTATTTTTGAGAAATTTTTTCACAGTGATGACGTTCT
ACAATGAAAAGGAGTCACTTCAGTGAAAATGATAGTTATAGCACCTTTCT
ACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAATT
TTTTTATAAATTTTTTTATTCCAAATTGTTCCACTCACTAATATCTTTCC
AACGATACCAAATTTATAAAGATTGAGGAATTCCTTCAAAAGTTATAGGT
CAATGAAAAAAGAGTGAACACTTATCGTGAATAGACTTTAGTCTTTCTTT
TAGGCTTTCTTTTGTTTGATATTGATAGTATCTTATCTGCCATATTTTGA
ACTAAACAGGACGAAGAATCGATGTACAGCCAGCGAAACCGAAACTTCAG
TTGGAAAAAATCCTGAAGCCAATAATATGCCCTCAAGATGTGGGATGTCG
GTATAATCCAAAAACCGGAAAAACTGAAATTTTCTCGAGTAAGTCTAACA
TCGCAGCTCTTTATTTCCAAAATTAAGGTATGTGTACACCTTTTTTCCGA
TTTTTTGTCAAAAATTTTTTTTTCAGTCAAAGTGGAAGAAAAGTTACTGG
ATTTCATTTTGGTAAAATCGCGATTATAAATTTTTTTTTGATCCAGAGTT
ATAACCATTTAAATTTCAAAACAAAGTTCGTCTTATGATGGATTATTTAC
TCAAATAATTGTCTCTTTCGGAAACAACAAAGACNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCGCCAAACTAACAAAA
ATCATGTAATTGGCTTGCGCAAAGTCCATTTTGACTCTTTATTCACCAAA
TCTTGGGCATATTTCATTTCAGTTCACTCAATTAAATATTATCATGCATT
TTCAATCAAATGGAGTCAGTTTCTGACTATCAATTAAGGGTTTTTTTATG
TTGTCATGTCGGTCAAGGTGCGAGGTCTGCGCGACCGGACCGGGCAACCG
GACCGGTTGCTCATACCAGATTTCAACCCTCGCGAAGCCATACAAGTACA
CCATTTATTGTAATGTGGACGTCTAATTGATGGTTCAATGGAATTTTCTG
GTTACTCTAATTAATCATATCAGTAGTATATCACAAAATAGTTTGAATGT
CAAGAGGAGCTGCAGAAATCCTTCCAGAAAATCACATAACGACAAATGGT
TTTGTACCGGATAGCCAACCTCTTCAGGATATTAACAACACAAAAGCTTG
TCCAAATACATCCAAGAACTCTTCAACAACAAATTACAATAAGAATAATC
CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAGCGATTAAGGCCAT
AGCAACCGATTGAAATTTGGTTGCTAGGGGTTTTTTTGGACTACCATGGT
ACACAAAAATGCTTCCTGCGACCCAAATACTTGAGATACGGGTTTTAAAT
TTTCAAGGCACTCTCTGGAATGGTTGCAGATTCGAAAACGCCCAAAAAAC
AAAAATTTATAATTTTTTCGGTAACTTTTCAAATCTCAGGTAACTACCAC
CTTAAAAAAAGAGAATGTGTCAAGAAAGGTGAACACATACCTTAAAGTTT
GTCTCGTAATAGTTTGCAGGGGAAACAAAAAGAATAGATACTTATTTTTA
CACCGACTTTAAGAACGACTCAAAACAGCGAATTTCTTAGGAAATAAAGC
ACAAAATGATTAAATTAAGAACATTTTAAGAACATTTTTAGGTTCAAAAC
TCAAAAAGTAAAGAACATTAATAAGCTTTAAAAAATATTTTGATGTTCTT
ATAAAAGACGTGCAGAACCTTTGTATAATTCGAATGTCTCTTCACTCGAA
CGATCACCTTACTCGTTAGAGGTAACATTTCTTAATAAACACACCTAATA
AATAAACCCCTGCCAATCTAACCTGCTCCATAACTCATATGTTACTCTAA
AAGTTCCCTAACAGTTTTTCTGTCCCTTGGAGTAATATTATAACACTCTT
TCTCCACAGACCCGGTATAATTTTTCCAGCCAGTAGGGGTGAAAATAACG
GACTGAAACTCAGTGGGAATTGATATTCCCATATCTTTTATGGCTGGGGA
TTTGAATTCTTTTGTTTTCAAGTCAGAAAATCCAGTGGGGATAGGAAAAA
CAGTGAGGATTGGTTTAATTGATTCTTTTCAGTGGGGACAAAAATTGAAG
GGTAATATTCCACCGGGGACGATATTTTGGCCAATTTTTCAAGCGGGAAG
GGGTCCCAGTGAATCCGTGAGAAGGGGGTGTATTAAGCTAAGTTTTGTCT
TCTCTCTGACCATTCGAGACGAAGACTCTTTCATTGAATACCTGAGACAC
ATCATTCCAAATATCTCTCGTTTATGGTTTCAGTATGTCGAAAGGATCTT
TGCACCAAACATAAATGTCCAAAGCAAAAGAAGTGTGTGGTTATGCTACT
TGGTTGTGTTCCAGTCTGTATTCGTGATCAAAAACGTCAGTAATATACAC
CCGATCGTCCTTACGTATCGTTGTTTTAACCCTATTCAACCTAGGCTTTT
AGGGGCGGTGCAGAACTAGGGGGGGGGGCTTTTCCTGTACCACCCCTTAA
CTTTTGATCTAGTGGGTCTTTTTGGATGAAATTTGGCACACAAGATCCTT
GTCACGTAAGGTAACTTTCGACAAGAAATTTTTTTGAAGACGTCCTTCAT
CATGCCCAAAGTGAGCAAAAACCGGAAATTTCCTTTGTTCTTATAAATAA
CTATTGTATTCTAACAAAAGCTTTAGAAAAAAGTTGCCTGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036878	XLOC_036878	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058543-exon-scaffold_311-1575043694:717866..718133	TCONS_00058543-exon-scaffold_311-1575043694:717866..718133	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1575043694:717096..717224	TCONS_00058543-exon-scaffold_311-1575043694:717096..717224	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1575043694:711792..712200	TCONS_00058543-exon-scaffold_311-1575043694:711792..712200	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1510915933:717866..718133	TCONS_00058543-exon-scaffold_311-1510915933:717866..718133	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1510915933:717096..717224	TCONS_00058543-exon-scaffold_311-1510915933:717096..717224	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1510915933:711792..712200	TCONS_00058543-exon-scaffold_311-1510915933:711792..712200	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1491911889:717866..718133	TCONS_00058543-exon-scaffold_311-1491911889:717866..718133	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1491911889:717096..717224	TCONS_00058543-exon-scaffold_311-1491911889:717096..717224	Clytia hemisphaerica	exon
TCONS_00058543-exon-scaffold_311-1491911889:711792..712200	TCONS_00058543-exon-scaffold_311-1491911889:711792..712200	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:711792..718133 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65792	0.681987	3.30879	3.2393	2.63888	2.27073	8.93277	11.3412	11.2981	13.8788	21.3232	12.1686	8.00127	6.68337	2.35939	2.33321	7.19526	14.7316	5.71818	18.2803	77.1014	76.5916	16.0988	18.9867	55.5371	43.4589	3.54534	2.82184	2.35626	2.7623

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058543 vs. Swiss-Prot (Human)

BLAST of TCONS_00058543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058543 (transcript) - C. hemisphaerica