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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058545 ID=TCONS_00058545|Name=TCONS_00058545|organism=Clytia hemisphaerica|type=transcript|length=1455bp tagatttcgaccatgattaaAGATATAGCTTATAGGAAATAAAATCGCAt aaattctttgtttttaaggTCAACGTGCGTCACCCTTTGGATGCTAAAAA TTGAGAACAGTTCAAGAAATGACCTGACTAGAGTTGGGGACCaacccggg ggtactagggttacGAGTTGACAGGGGATACCGCCCGACTTGGACCCTTG GATatacccttaccgggactaaaaaggagaaaacaaaggaaaactttgtg aattttacgacacttATTGCCCTTATTGAGACAAATTTGACCGAATTCcg atctttccgggggtaaaaagatgaaatttttttatttctccgacccttaa agggactgaaatttgatcttctgattttttccgacccttagccggacttt ggaaatccgcaaaaaaggtacccttaaagggcggcacataccgtaccctc catttgcctaagtacccccctccTAGGGGGACCAATAGTTGGCGATGAAT AATAAACCTTAAACAACCTTGCACCATCCTTACAAAGGGTCATGATGTTT CAATATTATTTTGCTGACGCAATTGTTTCCCTATGTTCATGGTTTCCCAT ACGTCATAATGGTTTTTAGTAAACTGTGAAATTTTCCTTCACCGTCTATA TTTAACAAGCCTGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATTA ACAGAGTGGTCTATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAAA TTGTTAATCGCAATATTTGGACAAAAGTTtcattttacaaaagaaatctt gGCTTGTTTCGAACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAAA ATGGTTTTATCAAAGACAACGATGttcatttttactttatttttctgTAG TATTATACAGCTCCAAGGACGAAGAATCGATGTACAGCCAGCGAAACCGA AACTTCAGTTGGAAAAAATCCTGAAGCCAATAATATGCCCTCAAGATGTG GGATGTCGGTATAATCCAAAAACCGgaaaaactgaaattttctCGATATG TCGAAAGGATCTTTGCACCAAACATAaatgtccaaagcaaaagaagtGTG TGGTTATGCTACTTGGTTGTGTTCCAGTCTGTATTCGTGATCAAAAACGT CAGTAATATACACCCGATCGTCCTTACGTATCGttgttttaaccctattc aacctaggcttttaggggcggtgcagaactaggggggggggcttttcctg taccaccccttaacttttgatctagtgggtctttttggatgaaatttggc acacaagatccttgtcacgtaaggtaactttcgacaagaaatttttttga agacgtccttcatcatgcccaaagtgagcaaaaaccggaaatttcctttg ttcttataaataactattgtattctaacaaaagctttagaaaaaagttgc ctgag Run BLAST on NCBI transcript from alignment at scaffold_311:711792..720771- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058545 ID=TCONS_00058545|Name=TCONS_00058545|organism=Clytia hemisphaerica|type=transcript|length=8980bp|location=Sequence derived from alignment at scaffold_311:711792..720771- (Clytia hemisphaerica) TAGATTTCGACCATGATTAAAGATATAGCTTATAGGAAATAAAATCGCAT
AAATTCTTTGTTTTTAAGGTCAACGTGCGTCACCCTTTGGATGCTAAAAA
TTGAGAACAGTTCAAGAAATGACCTGACTAGAGTTGGGGACCAACCCGGG
GGTACTAGGGTTACGAGTTGACAGGGGATACCGCCCGACTTGGACCCTTG
GATATACCCTTACCGGGACTAAAAAGGAGAAAACAAAGGAAAACTTTGTG
AATTTTACGACACTTATTGCCCTTATTGAGACAAATTTGACCGAATTCCG
ATCTTTCCGGGGGTAAAAAGATGAAATTTTTTTATTTCTCCGACCCTTAA
AGGGACTGAAATTTGATCTTCTGATTTTTTCCGACCCTTAGCCGGACTTT
GGAAATCCGCAAAAAAGGTACCCTTAAAGGGCGGCACATACCGTACCCTC
CATTTGCCTAAGTACCCCCCTCCTAGGGGGACCAATAGTTGGCGATGAAT
AATAAACCTTAAACAACCTTGCACCATCCTTACAAAGGGTCATGATGTTT
CAATATTATTTTGCTGACGCAATTGTTTCCCTATGTTCATGGTTTCCCAT
ACGTCATAATGGTTTTTAGTAAACTGTGAAATTTTCCTTCACCGTCTATA
TTTAACAAGCCTGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATTA
ACAGAGTGGTCTATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAAA
TTGTTAATCGCAATATTTGGACAAAAGTTTCATTTTACAAAAGAAATCTT
GGCTTGTTTCGAACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAAA
ATGGTTTTATCAAAGACAACGATGTTCATTTTTACTTTATTTTTCTGTAG
TATTATACAGCTCCAAGGTTGGTAGGTTTCTTTCTCGTGCGTATTATAAT
ATCCCTTTACTTTAAAGTGAATTTCTATATATTTCGTATGACTTGGAAAA
ATGATGCTATTTTTATGACAAATATAATAGGTCAAAAACTACTCGAAATG
GGGAAAGCGTTCCAAATAGGGTGAAGAAATTTCACTAAAATATTTATTCA
ATATAAAGTTATGATACAAAGTTGATAAGTGATTGACCCCAAAAAACAGG
AGAAAACAGCTTATAACTTTGTTTGATATCTTTTGACTGAATAATTATTT
TTGAGAAATTTTTTCACAGTGATGACGTTCTACAATGAAAAGGAGTCACT
TCAGTGAAAATGATAGTTATAGCACCTTTCTACAAGATCTTCATTTTTTT
CTTCTTCATTTTCATCTTCATTTTTAGAATTTTTTTATAAATTTTTTTAT
TCCAAATTGTTCCACTCACTAATATCTTTCCAACGATACCAAATTTATAA
AGATTGAGGAATTCCTTCAAAAGTTATAGGTCAATGAAAAAAGAGTGAAC
ACTTATCGTGAATAGACTTTAGTCTTTCTTTTAGGCTTTCTTTTGTTTGA
TATTGATAGTATCTTATCTGCCATATTTTGAACTAAACAGGACGAAGAAT
CGATGTACAGCCAGCGAAACCGAAACTTCAGTTGGAAAAAATCCTGAAGC
CAATAATATGCCCTCAAGATGTGGGATGTCGGTATAATCCAAAAACCGGA
AAAACTGAAATTTTCTCGAGTAAGTCTAACATNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNGGGACCAATAGTTGGCGATGAATAATAAACCTTA
AACAACCTTGCACCATCCTTACAAAGGGTCATGATGTTTCAATATTATTT
TGCTGACGCAATTGTTTCCCTATGTTCATGGTTTCCCATACGTCATAATG
GTTTTTAGTAAACTGTGAAATTTTCCTTCACCCTCTATATTTAACAAGCC
TGCTCGAGCTAAAACAGATACTTTACAAATGGAAAATTAACAGAGTGGTC
TATCTTAAAAGTGTCGAACAGAACTACGGGGTAGTCAAATTGTTAATCGC
AATATTTGGACAAAAGTTTCATTTTACAAAAGAAATCTTGGCTTGTTTCG
AACGATTAAAGGAACAATCAATTCAGGGAAAAGAACAAAATGGTTTTATC
AAAGACAACAATGTTCATTTTTACTTTATTTTTCTGTAGTATTATACAGC
TACAAGGTTGGTAGGTTTCTTTCTCGTGCTTATTATAATATCCCTTTACT
TTAAAGTTAATTTCTATATATTTCGTATGACTTGGAAAAATGATGCTATT
TTTATGACAAATATGATAGGTCAAAAACTACTCGAAATGGGGAAAGCGTT
CCAAATAGGATGAAGAAATTTCACTAAAATATTTATTCAATATAAAGTTA
TGATACAAAGTTGATAAGTGATTGACCCCAAAAAACAGCAGAAAACAGCG
TTATTAGACGTCAATCAGCTTAAAACTTTGTTTGATATCTTGACTGAATA
ATTATTTTTGAGAAATTTTTTCACAGTGATGACGTTCTACAATGAAAAGG
AGTCACTTCAGTGAAAATGATAGTTATAGCACCTTTCTACAAGATCTTCA
TTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAATTTTTTTATAAATT
TTTTTATTCCAAATTGTTCCACTCACTAATATCTTTCCAACGATACCAAA
TTTATAAAGATTGAGGAATTCCTTCAAAAGTTATAGGTCAATGAAAAAAG
AGTGAACACTTATCGTGAATAGACTTTAGTCTTTCTTTTAGGCTTTCTTT
TGTTTGATATTGATAGTATCTTATCTGCCATATTTTGAACTAAACAGGAC
GAAGAATCGATGTACAGCCAGCGAAACCGAAACTTCAGTTGGAAAAAATC
CTGAAGCCAATAATATGCCCTCAAGATGTGGGATGTCGGTATAATCCAAA
AACCGGAAAAACTGAAATTTTCTCGAGTAAGTCTAACATCGCAGCTCTTT
ATTTCCAAAATTAAGGTATGTGTACACCTTTTTTCCGATTTTTTGTCAAA
AATTTTTTTTTCAGTCAAAGTGGAAGAAAAGTTACTGGATTTCATTTTGG
TAAAATCGCGATTATAAATTTTTTTTTGATCCAGAGTTATAACCATTTAA
ATTTCAAAACAAAGTTCGTCTTATGATGGATTATTTACTCAAATAATTGT
CTCTTTCGGAAACAACAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNTGTTGCGCCAAACTAACAAAAATCATGTAATTG
GCTTGCGCAAAGTCCATTTTGACTCTTTATTCACCAAATCTTGGGCATAT
TTCATTTCAGTTCACTCAATTAAATATTATCATGCATTTTCAATCAAATG
GAGTCAGTTTCTGACTATCAATTAAGGGTTTTTTTATGTTGTCATGTCGG
TCAAGGTGCGAGGTCTGCGCGACCGGACCGGGCAACCGGACCGGTTGCTC
ATACCAGATTTCAACCCTCGCGAAGCCATACAAGTACACCATTTATTGTA
ATGTGGACGTCTAATTGATGGTTCAATGGAATTTTCTGGTTACTCTAATT
AATCATATCAGTAGTATATCACAAAATAGTTTGAATGTCAAGAGGAGCTG
CAGAAATCCTTCCAGAAAATCACATAACGACAAATGGTTTTGTACCGGAT
AGCCAACCTCTTCAGGATATTAACAACACAAAAGCTTGTCCAAATACATC
CAAGAACTCTTCAACAACAAATTACAATAAGAATAATCCATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTATTGAGCGATTAAGGCCATAGCAACCGATTG
AAATTTGGTTGCTAGGGGTTTTTTTGGACTACCATGGTACACAAAAATGC
TTCCTGCGACCCAAATACTTGAGATACGGGTTTTAAATTTTCAAGGCACT
CTCTGGAATGGTTGCAGATTCGAAAACGCCCAAAAAACAAAAATTTATAA
TTTTTTCGGTAACTTTTCAAATCTCAGGTAACTACCACCTTAAAAAAAGA
GAATGTGTCAAGAAAGGTGAACACATACCTTAAAGTTTGTCTCGTAATAG
TTTGCAGGGGAAACAAAAAGAATAGATACTTATTTTTACACCGACTTTAA
GAACGACTCAAAACAGCGAATTTCTTAGGAAATAAAGCACAAAATGATTA
AATTAAGAACATTTTAAGAACATTTTTAGGTTCAAAACTCAAAAAGTAAA
GAACATTAATAAGCTTTAAAAAATATTTTGATGTTCTTATAAAAGACGTG
CAGAACCTTTGTATAATTCGAATGTCTCTTCACTCGAACGATCACCTTAC
TCGTTAGAGGTAACATTTCTTAATAAACACACCTAATAAATAAACCCCTG
CCAATCTAACCTGCTCCATAACTCATATGTTACTCTAAAAGTTCCCTAAC
AGTTTTTCTGTCCCTTGGAGTAATATTATAACACTCTTTCTCCACAGACC
CGGTATAATTTTTCCAGCCAGTAGGGGTGAAAATAACGGACTGAAACTCA
GTGGGAATTGATATTCCCATATCTTTTATGGCTGGGGATTTGAATTCTTT
TGTTTTCAAGTCAGAAAATCCAGTGGGGATAGGAAAAACAGTGAGGATTG
GTTTAATTGATTCTTTTCAGTGGGGACAAAAATTGAAGGGTAATATTCCA
CCGGGGACGATATTTTGGCCAATTTTTCAAGCGGGAAGGGGTCCCAGTGA
ATCCGTGAGAAGGGGGTGTATTAAGCTAAGTTTTGTCTTCTCTCTGACCA
TTCGAGACGAAGACTCTTTCATTGAATACCTGAGACACATCATTCCAAAT
ATCTCTCGTTTATGGTTTCAGTATGTCGAAAGGATCTTTGCACCAAACAT
AAATGTCCAAAGCAAAAGAAGTGTGTGGTTATGCTACTTGGTTGTGTTCC
AGTCTGTATTCGTGATCAAAAACGTCAGTAATATACACCCGATCGTCCTT
ACGTATCGTTGTTTTAACCCTATTCAACCTAGGCTTTTAGGGGCGGTGCA
GAACTAGGGGGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGATCTAG
TGGGTCTTTTTGGATGAAATTTGGCACACAAGATCCTTGTCACGTAAGGT
AACTTTCGACAAGAAATTTTTTTGAAGACGTCCTTCATCATGCCCAAAGT
GAGCAAAAACCGGAAATTTCCTTTGTTCTTATAAATAACTATTGTATTCT
AACAAAAGCTTTAGAAAAAAGTTGCCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058545-exon-scaffold_311-1575043694:719855..720771 | TCONS_00058545-exon-scaffold_311-1575043694:719855..720771 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1575043694:719103..719231 | TCONS_00058545-exon-scaffold_311-1575043694:719103..719231 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1575043694:711792..712200 | TCONS_00058545-exon-scaffold_311-1575043694:711792..712200 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1510915933:719855..720771 | TCONS_00058545-exon-scaffold_311-1510915933:719855..720771 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1510915933:719103..719231 | TCONS_00058545-exon-scaffold_311-1510915933:719103..719231 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1510915933:711792..712200 | TCONS_00058545-exon-scaffold_311-1510915933:711792..712200 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1491911889:719855..720771 | TCONS_00058545-exon-scaffold_311-1491911889:719855..720771 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1491911889:719103..719231 | TCONS_00058545-exon-scaffold_311-1491911889:719103..719231 | Clytia hemisphaerica | exon |
TCONS_00058545-exon-scaffold_311-1491911889:711792..712200 | TCONS_00058545-exon-scaffold_311-1491911889:711792..712200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_311 | supercontig | scaffold_311:711792..720771 - |
Blast
The following BLAST results are available for this feature:
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