TCONS_00058548 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058548
Unique Name	TCONS_00058548
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	980

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_311:863221..873448-
coding sequence from alignment at scaffold_311:863221..873448-

transcript sequence

>TCONS_00058548 ID=TCONS_00058548|Name=TCONS_00058548|organism=Clytia hemisphaerica|type=transcript|length=980bp
AGTCTTTAgagtaaaaaaatacaaatcgaTAAcagaataaaatgaaattt
ttgcagCTTCTACCATTGTAACCTACAATAATGGTCGGGGTATCAACATT
GAAGAAAGTTGCAATTTATGGTGGTGTATTTACTGTTGCTTCCTGTTCAT
TCTTCTACTACAAAATACAAAGTCGTTTTGCATCTGGTGACTATTATCGT
TTGTCCATTGAAGCATTACGTAACGATTCTCGATTAGCCAATGGGCTTGG
ACCACCTGTTCGCTCTTTGTTCTTGAACCTTGGGGATAGTAATAATCGAT
TATCGCCCACAGAAGCACATttgtCAATTCCAGTTAAAGGAACAAAGCAC
AAAGGATTTCTGCACACCAAATGTTCCACAGACGTCCAAGGGGAATGGAA
GATCAATTCCCTTGAATTAGAAGTCAATTCAAAAAGGTTTATGGTCATAT
TATTGTATGCTGTCGATGccgtttattttcaaatcatgaATCAACAAATA
TACGTCCGCACTCTGTATCAGTACGAGGCTAAAAATGAGAACGAGATATC
GTTTGAAAAAGgagtttttctcaaaattctTAGTAGACCTGAAGGTGACT
GGTGGTGGCTTGCTTTAAACGAAGCAAACTCTCAAAAAGGCTGGGTACCA
CGAAACTACGTGCAAGAAATTGTCGACTTGCCTGAACACAACAATAATGG
TCAGATAGGAAGAAAGCAAGCTGAAACAAAATCGAATCGAAAACCAAACA
AGTCAGACACACTTAGATACAACcagaaaaataagaaagaaaatgatGGC
TATGAGACAATGGGTTCCCTACAAAGAGGATCAGGAGCTCAAGACGAGAG
TGATTATGTTCTGATGAATACAGCAAATGAATTCCCACCAGATGACGGAT
ACGATCGTGTGAAAAGTCAATCTGATGGATATTCGCTGGTCAGAAGCATC
TCTTACGGAGGCTACAAACTTCTAGGAACG

Run BLAST on NCBI

protein sequence of TCONS_00058548-protein

>TCONS_00058548-protein ID=TCONS_00058548-protein|Name=TCONS_00058548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MVGVSTLKKVAIYGGVFTVASCSFFYYKIQSRFASGDYYRLSIEALRNDS
RLANGLGPPVRSLFLNLGDSNNRLSPTEAHLSIPVKGTKHKGFLHTKCST
DVQGEWKINSLELEVNSKRFMVILLYAVDAVYFQIMNQQIYVRTLYQYEA
KNENEISFEKGVFLKILSRPEGDWWWLALNEANSQKGWVPRNYVQEIVDL
PEHNNNGQIGRKQAETKSNRKPNKSDTLRYNQKNKKENDGYETMGSLQRG
SGAQDESDYVLMNTANEFPPDDGYDRVKSQSDGYSLVRSISYGGYKLLGT

Run BLAST on NCBI

transcript from alignment at scaffold_311:863221..873448-

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058548 ID=TCONS_00058548|Name=TCONS_00058548|organism=Clytia hemisphaerica|type=transcript|length=10228bp|location=Sequence derived from alignment at scaffold_311:863221..873448- (Clytia hemisphaerica)
AGTCTTTAGAGTAAAAAAATACAAATCGATAACAGAATAAAATGAAATTT
TTGCAGCTTCTACCATTGTAACCTACAATAATGGTCGGGGTATCAACATT
GAAGAAAGTTGCAATTTATGGTGGTGTATTTACTGTTGCTTCCTGTTCAT
TCTTCTACTACAAAATACAAAGTAAGTTTATTTCAATACATTTTGCTTGA
TGATGCTTGGTTTCGTACTTAGTCTCCTTTATATCCTGCATTAGTAAGAT
TCTAGCAATTTCATTGGTCAAAAGACATCACGTGGAGGTGGGTTATATAC
TGTGTCTATCTTCCTCGCATTCGATTGAAAAAAAGAAGACATTGCATATT
GACGAATGCTCTTTCGAATGTTTTGTTTTGAAAAGACAGAAAACTCGGCA
AGCCTCACCAATACGGTTTTCGATGACCCTGTATATCCCGTATCCCATCT
CGAGAAGACTGTGTAACTAATATTATTCTCAACTTCAGGGGCAGGCTGGA
GACTTCAAAAATGATCGGGTTTGGCTGAAATTTGGCACACTTGTTCCTTG
GGTGAATATCTGGGGGTGTTTTTTTTCATTTTTTGAAAATTTTCATTTTT
AAGGGCGTGGTCACAAGTTTTCGCCAAAACGAGGCTAAAACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTATGATACAAAAGCAGTACTCAAGCATCTTGAAAGATC
TGAACAAAAAGTTTCTTTTTGACTATATTTTTAGCGCAGCTGGGGCAGCA
GCTGGTTCATTCAAAAACAGCTTTTTTAAGCCTCAGGTCTATTGAAAATT
TGAACCATAAATTTTTTTAGGACACATTTCTGACATTTCTACGATGTTAA
AAATATTGTATCGAAAGGAGTCTTTTTTCACTTCAAATCTCCACATTCTT
CTGGAGAAATGCAAAATTATCTGCTACCCAATCAGACCATACACAGAATG
CAATTTGATATAAAAATTTCCCTTCACTTTTTTAGGGTAATTCAAGATGA
AACGCTGCAATCTTTTAATAATTTACGGTGAAATTTCCGCTAATCATCAA
GTAATTATTGAAAGATTACAGTTTTTCACCGCCAATTCATCTATAGTCAA
GGTAATTGTTTTTTTCTTGTGAAACAGTTTGCAAATTTCATCTAAAAATT
TACAACTATAAATCGTGCGAAAACACAAATTTGGTTTGAATCTTGTAAAA
AACTAAAAAGTTTATCACAATTCCTGAACCAATGATCAAAATTACTTTAA
ATTTGGAATGTAGGGTCACTGTGACGATTGAAATGTATTTGTAAAAAAAA
ATTCCCCAAAAAATCTGTGGTTCAAATTTTCAATTTTAGACCTAAGGCCG
AGAAGGCATTTGACTGCAAACCGAATGCTTTGCAAAAAATAACTTGTCAA
AATAAATTTCTTTACTCAAATATCCTTTTAAATGATCCAAGTGGCATACC
CATAAAATAACACGTAAAAATGAATTGATTTATTCAAAATTGAAAAAAAA
TAAGATAGAAATTTCATACAACATTGATTTTTGCATGACAAAAATAAATA
TTGAATACAATGTCCTTATATAATGCCCATCTTGAATATAGTAGGGCAGA
AAAGCAACTATTACTAACATATAGCAGTCAATAAGAAGATAACTAAATAA
AATTCTTTTCTTAATGACTACCTTGCTAGGAATGGTTGCTACTTTGTCCA
CAATAGCGCTCTGCAACACATACGTCATAATTAATACTTTTCACTTTTTT
TGACATTTGTACAAGTTGCAATCCCACAATTCAACGCAGCTCAATTAAAG
ATACGTGCAAGCTGTTATATATCGAGAGTAGTGATTATATCAAAAATAAA
ATCTATTTTTAGGTTCAGCGCGGTGCCTTATTGAAGTTGGTGTCAACATC
ATTGGAAATGTTTATTATATATACTTTTCTAAAAATAAAAAATTTTAACA
CGCTACTTGTATAATTTTTCATTATTTTGAAACTACCTAGATTATTTATT
TTGAAACTTTTATATTTTTAATAATTATCAAAATTATAATCAGTATATGA
CAACTTCGCACCAGGAAAAAATTTGCTATGTGTGACTAGTAGTATAGTGA
CTAGTAGACTACAGCTTTATTCAAAATTTTAAAAGCTTTCTCAAGTTTTT
CAATAAAACTGCAATTCACCAATAATCTTTAATTTCACAAGTTTGGTATA
ATTACTGATTTTTGCTGTGTATAGACTGCAGATGTTTTCACGGGTATAAT
CATTTACAATATCATTTTTTATATATGAGTATGATTCATTCTTTTTTTTG
CAAACCACACTGATCCTCTTTTTTCGTTAGCTCGCGGCCTGTAAGAAAAT
GACAAATTAAAAAAATTTTGATAAAGAAAAATAATGCATCACACGTACAC
TTGTAAAACTTGTAAAAAAGCTGTGATTGAAAAATGCGGCTCTAATAAAA
TTTTCCAATGAGCAATCAGACAAAATAATCTGCATACACTGGAGAGTGTT
ACAAAAAGATTAGTCTTTCAAAATAAAAGAAAAGAGCCGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAA
AAATAAATTCAAAACAAACCATTTACATAAAACACCTTGTTGCAAAGAAG
TTACAAACTAAAGTACTAACTAATAGGAGGCTAAGAGACTAAAATGCCAA
CGAATTGCATAAAACATTTCCACACATTTAGATCAACTTTCTGTCGCCCT
GTTTTGGTATCAAATTCCAGTCGGGTCAATTTGTATTCACAGCAAGAACT
GCCCCGGGATTTACCAGTCAGACCCGACTGTTTGTTTACATTTGTTCGAA
CCGGGCCGGCCGATCACACCCCTAACCAAAATCCAAAATTTCCGCTTTTC
GACCAAATTGATATAGTCTAAGACAACGGCCTCTCCCGTAAAAAAATTCC
CCTCTTCACGTTTGTTCTTTTTTTAGATGAAACTCGTCTTAGACTATAGC
ATAGTCTAGGCAGGCTGGAGACTTCAAGGGCGAATCCCTGTGGGTGGTTT
TCATTATTTTATAATTTCCATTTTAAGGGGGTGGTCATGAGTTTTTAGTT
GAAATTGGTTACAATCTTACAATTGGGCCTACGAATGATTTAAAAACACT
AAAGTTGATCCCAGTGCGGTTAGCACGTTCGACAGTTTCTCTAAACGTCC
CGTTTATAAATAAGATGTGAATAATTACTTTTTACTCAATTTTCAAAGCA
GTCGGAATTCACACTCCCTTGACATAGGTTCTAATTATAACAAAATCATA
ACGGCCAAGGACTGCTACTAGCCTATATTTATTCCCCTGGACCAATCTTT
GATCGGTGTTTGTTAGAAGCTCGGTACCGTGAAATAGTAGTATTACTCGA
TGTAGGTCAAATTTATGGTGCTGTCCCTTACAAAAATTCTGGCTGGATAG
TGGGATTTTGCCTAAATTTGGCGCACTTGTTCTATGGGTAAATAAATATC
TGCGGTTATTTTTTCTTTCTTTGTAAAAATTGATTTAAAAAAAATTTAAT
TTAGCGAGTTTATGTATTCGAGATCAATCGAGGGGACGGTAAAAAGCAAA
GTTGACATGTCTCCAAAATCACCGTTCACTTTGCTCGACGACGGTAAAAC
CACCAAAATACCGTCGTCTGTTTAGGTGAGCAAAGGTGATATAGAGTCGT
ACATCAACTATCGACTTTATTATGTATCGATTTCACTTACCATCGCCCTC
GACATCCTCCGATACATAAACTCGGTTTTATCTCCAAAACTAAGGAAATA
ACTTTGGAGAAGCCTGGGGTCTTCAAAAATGGTAGGATTTTGCAGAAATT
TTGCACTTGTTCCATTGGTGAAAACTTCCAAAGTATTGATCCTTGCTTCA
ATCAAACCTTCAAATTGTTGGAATACTGAAATAAAACTTCTAAAAACTCC
GATCAGAGTATATCATGGTTTAAAGGGGATGGAAGGTTTTCACATAATCC
TTAAAGTTATTCTTCTGCTCTCTTTTTTAGGTCGTTTTGCATCTGGTGAC
TATTATCGTTTGTCCATTGAAGCATTACGTAACGATTCTCGATTAGCCAA
TGGGCTTGGACCACCTGTTCGCTCTTTGTTCTTGAACCTTGGGGATAGTA
ATAATCGATTATCGCCCACAGAAGCACATGTAAGAAAATAGGGGTATTAT
TGTTATTAAAGGGGTCGCCAATTTTCTTACAAGTTTATCTGGTTAGGTAG
TTTTTAGAGTAGTTTAAGTAAGTTACATGTTAGTTTAGGTATTTTACACA
GGAAAAAATATTCGAATTCCATGCCTGGAAAAATACTATTTTCAGGTGGA
ATTTATTTTCACCCTGGAATTTTTTTGCTTCATTTTCTAAGAAGGCTGGA
ATTTTATAAAAACCGGTGTGAAAATTGTTCCTTTCCAGCCTTTCAACACA
AAAACTCTTGTCTGGAATTTCATAATTTTCCAGGTGGAAATTTTCCAGGC
TGGAAAATATTAAAATTCAGGTATTTTGCCATTATTTTCAAAAAAAATAG
TGACTTGGAAAATCCACCCCTAATTTGATTACTTTCCAGGGTGGTAAATT
TCCGGGTTGGTAAACAGCCATATTCAGGTCTGATTTTTCTTGCCATTATT
TCCCAGGCCTGGGATTTCTTGCCATTATTTCCCAGGCCTGGGATTTCTCG
GGTTGTAAAATGATCATTTTCGGGGTGGGATTTATTTTCCAAAATCAGAG
ATTTGAAAACCCACCCCAAAAATGGGCAATTCCCTGGGATTTCTCGGGAT
GTAAAATGTACGCATGTGCAAAGTTAAAACCACAAGTGATTTTTCAGTCA
AAAGTGTTCGAGTCGTATGTAAACCAAACCATTTTTAGGGTGTTTTCGAT
CAGTGTGTAACACAACGCTAAAGGTGAGGCGTCCCGCAAGCCAAGGGCGG
CCTCATTCGTTCGCAATGGACTTGCGTCGCAAGGGCTCAGTGGATCGGTG
AGACGGGTTTGAGGTCATTAAGTTGGCTCTCTAGTGCAGCTCCACTGTTG
TAATAAAAGTGCCGGGATTCTCAAAGTAGATGTCAGAACGGATGAGAGCT
ATCGAACCAATGCTCACAGAAAGATCGAATACATTTAAACACCCCTGTCT
CTGTGACCCAGTGGGATCCACCCCACTGCCCACCAAAAATGGCTCATTTT
TCAGCCCCACTGGACAAATCACTCACCCCACTGGAATGTTGTAGTAAAAA
AACACCCCATTGAAAATGATAAAAAGTTTACACATACCCCACTCGAAATG
CCCTCATTTTAACGTACCCCAGTAGAACTTTTCTTTCAAAAAATCACCCC
ACTAGAATTTTCTCCTTCCCCTTCTTTAAAGTTGAAATATCCAAAAGAGC
CAAAATAATCTGCTCGCTTCGCTCCCTCGCCGTCAAATGTTCCACTTCAA
TATATTAACTGTATTTAACCCGATTTCTAATGTCATTGTCATGGTCATTT
TAAAACGTAGAAAATGCCTAACGAGAGGGGTTGAAAATCAAAAATTTCTG
TCAGCGCAAACCACAGTTGTACTTGTACCTTTCTTTCTTTAAAGCTAGGT
TATAGCCTGAAAGATTTTCGATAGAGGCTTTCTCACTTGCGTAGATACTG
AAAGAAAGACCTCTACTTAAATCATGTTGACTAAACATTACTAGGTTCCA
GATTTCATAAAATTTGATGTAACGTACTGCTCCCAGACCTCATTACATTT
CCTGTTACAGTGTAAGAGTAAATCTACCTGATCAAGATGATATTTCTAGT
GATATTTAGTAGCATGTAAGAAGCAGATTTTTACTAGCACTAAACCAAAA
GTTAGCCAACACCTTCTATCTTTAAAACGCGACAAAATTAAGCGGTCTAC
CCAGTCTAACTCACAGGCTAACTAAAATTTAGCCCTTGCAAAAAATTCTT
TCTCACCCCAGTGAATATCAAGGGAAATTTTCGCCACCCCACTCAATATT
TGAAAGAATATTTTTCACCCCAGTGAATTTCAGGTCTTTTGATTCTCACC
CACTGGGTAATCAACACCCACTGGGGCACAGAGACAGGGGTGTATTTAAC
AATTTATTAAACGTAATTCATTTTCGGCATTTTCGCCCCCGAATATGTAA
ATATCCAAATTTCCAACCTGGAAATAAGCTCTTTTCAAACCTGAAAATAC
TGTTTTATGAATTATATCGAGGCTGGAAAGTTATTTTCTCTGGAGTGAAT
AAAGCACTTTTCCTACCCTGGAAAAAGTCACTTTTCCAAGGCTGGAAAAA
GTCACTTTTCCAAGGCTGGAAGAGGCATCAACATTCCAGGGCTGGACCAG
CCCAGGAATTTAGCAATTTTCCAGGTGGGAAAGAGGTCAATTTCCAACCC
TGGAATTCGATAGTTTTTTCATGTCTTAGGGGGTCGTAAAGCCTGCTTCC
CAAAAATGCATTCAGAACCCGGATGTTGAGCAAAAAGCTGGTCTTTAAAT
CCTACTCCTGCTCTTTTAAAGCGATTCTAAATCCAGATTGACACTAAATA
CTGAATAGCTAGGGGGGGAACTAAGCTCTCGAAAACATTGCAGTTGATTG
TTCTTTTTATTTTTGACAATAGAATCTCTACTTCTATACAGACCATCAAT
TTTCAGTTCGAAGTTAAATAAGTTGAATAAGTATTGAAACGAATGGTTTA
AATTTTTATTGGATCAACTGAATATTTAGCATTGATGATTTAGCAAAAAT
AACATCTTCATTCAATCATGGAGGTAGAAATTCTACCTCCATGATTCAAT
GTAGAAGATCGGCTTTAAGCTGTAAATTTTTCACTTTTTTTTTACAGTTG
TCAATTCCAGTTAAAGGAACAAAGCACAAAGGATTTCTGCACACCAAATG
TTCCACAGACGTCCAAGGGGAATGGAAGATCAATTCCCTTGAATTAGAAG
TCAATTCAAAAAGGTTTGAAGTGAATTATTCCAAGAGTATAATTGCAAAG
GACGAAATTGACAACGAAATTCTAAGAGATTGATGAAATTGGCCAAGTTC
AATCTTGTAAAATGACTATATAATGGAATAGCTTGTCGCGGCTTTTGCAA
GTTGTTTTGGAAACAGGACTTAGAGGAATGAACTCAAGGCAATCTTCTCA
CCAAATTACCAATTTTTATGAACTTCCTAAGAAGGAATTCTGTCTCCTTG
AATAGGTAAATAGGAAATCGGTGCTAGAACGATCCACATAAAATTATTTT
TTTGAATGGTGTGACACAGAGAACCAACAATAATATTGATTTTACTCTAA
CTTTGGACGAGGTATATCATTCGATTTACATTAGTTTCAGGAATCAGAGC
TTATGGAACAAATAAAAAGACGTACAAATTATCTGGAAATTCCCTTGCAT
AATCTTCTTTTAAGCTATACAAAACTATTTGGAGTCTTGCTTTAGGTGAA
ATGCCTTTTATTTCTCCGCTCGAAAAGCTTTTATGAATTTTCTATTAAGG
CGTCCAGCTATTAGAACATAGGGTTTCAGAATATTAAGAATAAGTTAAGA
ACTTCTTAAGGCTTCACAGACTCAAAAACGTCAAATTTCTTAGGAAATCG
CTCAAAACACTAATTTTAGAATATTTAAAGAACGTCCGAAGTGTTAATTT
TATTTTGGATGCTCTTATCGCAAAAATGTGTAAGTGCGTCTAAGTGTATA
AGTAAGGACATTTTTGAAAAATGTTCCATTAAATTGAACCTGAGATTGTT
CTTACATTTCTTTTATTAGGGTCTGAATTTGAGGCTGGTGTTCTTATAAA
ATTGTCCTTATAAATAAAAAAGGTGCATGACATAAGTTTAGACTTCCTTA
AACTTTACGAAACTAAAACCCCTGAAAATAAGTTTCTCCTCTTTGCACTA
CCATTATGCTTTTGCTTGAGTCGGCCTCGTATATTATCTATAGATCTCAT
TAAATTTCTTACGTCGTTCGCCGAAATAGATTTTATTATGTCCATTGTTT
TAAACTAAAAGCTAGACTATGCTACTTACATGGTGACATTTCAAAGTAAT
GCTAATTAAACTGGCTTTTATTTTAATTGATGGAGTACAGGTTTATGTTT
TAAAAGTTGAGAAAACTAAAACTTGAAGTTATAGGTTTATGGTCATATTA
TTGTATGCTGTCGATGCCGTTTATTTTCAAATCATGAATCAACAAATATA
CGTCCGCACTCTGTATCAGTACGAGGCTAAAAATGAGAACGAGATATCGT
TTGAAAAAGGAGTTTTTCTCAAAATTCTTAGTAGACCTGAAGGTGACTGG
TGGTGGCTTGCTTTAAACGAAGCAAACTCTCAAAAAGGCTGGGTACCACG
AAACTACGTGCAAGAAATTGTCGACTTGCCTGAACACAACAATAATGGTC
AGATAGGAAGAAAGCAAGCTGAAACAAAATCGAATCGAAAACCAAACAAG
TCAGACACACTTAGATACAACCAGAAAAATAAGAAAGAAAATGATGGCTA
TGAGACAATGGGTTCCCTACAAAGAGGATCAGGAGCTCAAGACGAGAGTG
ATTATGTTCTGATGAATACAGCAAATGAATTCCCACCAGATGACGGATAC
GATCGTGTGAAAAGTCAATCTGATGGATATTCGCTGGTCAGAAGCATCTC
TTACGGAGGCTACAAACTTCTAGGAACG

Coding sequence (CDS) from alignment at scaffold_311:863221..873448-

>TCONS_00058548 ID=TCONS_00058548|Name=TCONS_00058548|organism=Clytia hemisphaerica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_311:863221..873448- (Clytia hemisphaerica)
GTTTATGGTCATATTATTGTATGCTGTCGATGCCGTTTATTTTCAAATCA
TGAATCAACAAATATACGTCCGCACTCTGTATCAGTACGAGGCTAAAAAT
GAGAACGAGATATCGTTTGAAAAAGGAGTTTTTCTCAAAATTCTTAGTAG
ACCTGAAGGTGACTGGTGGTGGCTTGCTTTAAACGAAGCAAACTCTCAAA
AAGGCTGGGTACCACGAAACTACGTGCAAGAAATTGTCGACTTGCCTGAA
CACAACAATAATGGTCAGATAGGAAGAAAGCAAGCTGAAACAAAATCGAA
TCGAAAACCAAACAAGTCAGACACACTTAGATACAACCAGAAAAATAAGA
AAGAAAATGATGGCTATGAGACAATGGGTTCCCTACAAAGAGGATCAGGA
GCTCAAGACGAGAGTGATTATGTTCTGATGAATACAGCAAATGAATTCCC
ACCAGATGACGGATACGATCGTGTGAAAAGTCAATCTGATGGATATTCGC
TGGTCAGAAGCATCTCTTACGGAGGCTACAAACTTCTAGGAACGTTGTCA
ATTCCAGTTAAAGGAACAAAGCACAAAGGATTTCTGCACACCAAATGTTC
CACAGACGTCCAAGGGGAATGGAAGATCAATTCCCTTGAATTAGAAGTCA
ATTCAAAAAGGTCGTTTTGCATCTGGTGACTATTATCGTTTGTCCATTGA
AGCATTACGTAACGATTCTCGATTAGCCAATGGGCTTGGACCACCTGTTC
GCTCTTTGTTCTTGAACCTTGGGGATAGTAATAATCGATTATCGCCCACA
GAAGCACATATGGTCGGGGTATCAACATTGAAGAAAGTTGCAATTTATGG
TGGTGTATTTACTGTTGCTTCCTGTTCATTCTTCTACTACAAAATACAAA
GTTTATGGTCATATTATTGTATGCTGTCGATGCCGTTTATTTTCAAATCA
TGAATCAACAAATATACGTCCGCACTCTGTATCAGTACGAGGCTAAAAAT
GAGAACGAGATATCGTTTGAAAAAGGAGTTTTTCTCAAAATTCTTAGTAG
ACCTGAAGGTGACTGGTGGTGGCTTGCTTTAAACGAAGCAAACTCTCAAA
AAGGCTGGGTACCACGAAACTACGTGCAAGAAATTGTCGACTTGCCTGAA
CACAACAATAATGGTCAGATAGGAAGAAAGCAAGCTGAAACAAAATCGAA
TCGAAAACCAAACAAGTCAGACACACTTAGATACAACCAGAAAAATAAGA
AAGAAAATGATGGCTATGAGACAATGGGTTCCCTACAAAGAGGATCAGGA
GCTCAAGACGAGAGTGATTATGTTCTGATGAATACAGCAAATGAATTCCC
ACCAGATGACGGATACGATCGTGTGAAAAGTCAATCTGATGGATATTCGC
TGGTCAGAAGCATCTCTTACGGAGGCTACAAACTTCTAGGAACGTTGTCA
ATTCCAGTTAAAGGAACAAAGCACAAAGGATTTCTGCACACCAAATGTTC
CACAGACGTCCAAGGGGAATGGAAGATCAATTCCCTTGAATTAGAAGTCA
ATTCAAAAAGGTCGTTTTGCATCTGGTGACTATTATCGTTTGTCCATTGA
AGCATTACGTAACGATTCTCGATTAGCCAATGGGCTTGGACCACCTGTTC
GCTCTTTGTTCTTGAACCTTGGGGATAGTAATAATCGATTATCGCCCACA
GAAGCACATATGGTCGGGGTATCAACATTGAAGAAAGTTGCAATTTATGG
TGGTGTATTTACTGTTGCTTCCTGTTCATTCTTCTACTACAAAATACAAA
GTTTATGGTCATATTATTGTATGCTGTCGATGCCGTTTATTTTCAAATCA
TGAATCAACAAATATACGTCCGCACTCTGTATCAGTACGAGGCTAAAAAT
GAGAACGAGATATCGTTTGAAAAAGGAGTTTTTCTCAAAATTCTTAGTAG
ACCTGAAGGTGACTGGTGGTGGCTTGCTTTAAACGAAGCAAACTCTCAAA
AAGGCTGGGTACCACGAAACTACGTGCAAGAAATTGTCGACTTGCCTGAA
CACAACAATAATGGTCAGATAGGAAGAAAGCAAGCTGAAACAAAATCGAA
TCGAAAACCAAACAAGTCAGACACACTTAGATACAACCAGAAAAATAAGA
AAGAAAATGATGGCTATGAGACAATGGGTTCCCTACAAAGAGGATCAGGA
GCTCAAGACGAGAGTGATTATGTTCTGATGAATACAGCAAATGAATTCCC
ACCAGATGACGGATACGATCGTGTGAAAAGTCAATCTGATGGATATTCGC
TGGTCAGAAGCATCTCTTACGGAGGCTACAAACTTCTAGGAACGTTGTCA
ATTCCAGTTAAAGGAACAAAGCACAAAGGATTTCTGCACACCAAATGTTC
CACAGACGTCCAAGGGGAATGGAAGATCAATTCCCTTGAATTAGAAGTCA
ATTCAAAAAGGTCGTTTTGCATCTGGTGACTATTATCGTTTGTCCATTGA
AGCATTACGTAACGATTCTCGATTAGCCAATGGGCTTGGACCACCTGTTC
GCTCTTTGTTCTTGAACCTTGGGGATAGTAATAATCGATTATCGCCCACA
GAAGCACATATGGTCGGGGTATCAACATTGAAGAAAGTTGCAATTTATGG
TGGTGTATTTACTGTTGCTTCCTGTTCATTCTTCTACTACAAAATACAAA
GTTTATGGTCATATTATTGTATGCTGTCGATGCCGTTTATTTTCAAATCA
TGAATCAACAAATATACGTCCGCACTCTGTATCAGTACGAGGCTAAAAAT
GAGAACGAGATATCGTTTGAAAAAGGAGTTTTTCTCAAAATTCTTAGTAG
ACCTGAAGGTGACTGGTGGTGGCTTGCTTTAAACGAAGCAAACTCTCAAA
AAGGCTGGGTACCACGAAACTACGTGCAAGAAATTGTCGACTTGCCTGAA
CACAACAATAATGGTCAGATAGGAAGAAAGCAAGCTGAAACAAAATCGAA
TCGAAAACCAAACAAGTCAGACACACTTAGATACAACCAGAAAAATAAGA
AAGAAAATGATGGCTATGAGACAATGGGTTCCCTACAAAGAGGATCAGGA
GCTCAAGACGAGAGTGATTATGTTCTGATGAATACAGCAAATGAATTCCC
ACCAGATGACGGATACGATCGTGTGAAAAGTCAATCTGATGGATATTCGC
TGGTCAGAAGCATCTCTTACGGAGGCTACAAACTTCTAGGAACGTTGTCA
ATTCCAGTTAAAGGAACAAAGCACAAAGGATTTCTGCACACCAAATGTTC
CACAGACGTCCAAGGGGAATGGAAGATCAATTCCCTTGAATTAGAAGTCA
ATTCAAAAAGGTCGTTTTGCATCTGGTGACTATTATCGTTTGTCCATTGA
AGCATTACGTAACGATTCTCGATTAGCCAATGGGCTTGGACCACCTGTTC
GCTCTTTGTTCTTGAACCTTGGGGATAGTAATAATCGATTATCGCCCACA
GAAGCACATATGGTCGGGGTATCAACATTGAAGAAAGTTGCAATTTATGG
TGGTGTATTTACTGTTGCTTCCTGTTCATTCTTCTACTACAAAATACAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036880	XLOC_036880	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058548-exon-scaffold_311-1575043694:873278..873448	TCONS_00058548-exon-scaffold_311-1575043694:873278..873448	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1575043694:867720..867868	TCONS_00058548-exon-scaffold_311-1575043694:867720..867868	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1575043694:864936..865051	TCONS_00058548-exon-scaffold_311-1575043694:864936..865051	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1575043694:863221..863764	TCONS_00058548-exon-scaffold_311-1575043694:863221..863764	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1510915933:873278..873448	TCONS_00058548-exon-scaffold_311-1510915933:873278..873448	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1510915933:867720..867868	TCONS_00058548-exon-scaffold_311-1510915933:867720..867868	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1510915933:864936..865051	TCONS_00058548-exon-scaffold_311-1510915933:864936..865051	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1510915933:863221..863764	TCONS_00058548-exon-scaffold_311-1510915933:863221..863764	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1491911889:873278..873448	TCONS_00058548-exon-scaffold_311-1491911889:873278..873448	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1491911889:867720..867868	TCONS_00058548-exon-scaffold_311-1491911889:867720..867868	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1491911889:864936..865051	TCONS_00058548-exon-scaffold_311-1491911889:864936..865051	Clytia hemisphaerica	exon
TCONS_00058548-exon-scaffold_311-1491911889:863221..863764	TCONS_00058548-exon-scaffold_311-1491911889:863221..863764	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058548-protein	TCONS_00058548-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:863221..873448 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.272315	2.53093	1.80032	0	1.54038	2.39013	4.65174	1.97686	0.0918378	5.02186	8.65884e-10	0.952818	0.268903	0.000141149	3.71401	1.5478e-05	2.53032	1.89241	3.07309	0.904174	1.01892	0	0	1.70911	1.05954	0.803623	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001452	SH3_domain
IPR014807	Cyt_oxidase_assembly-1

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058548 vs. Swiss-Prot (Human)

BLAST of TCONS_00058548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058548 (transcript) - C. hemisphaerica