TCONS_00058482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058482
Unique NameTCONS_00058482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058482 ID=TCONS_00058482|Name=TCONS_00058482|organism=Clytia hemisphaerica|type=transcript|length=1198bp
TATATCTTGATGTATTAAGATCTAGATAAAATCGAAAAGCATATTACATA
TTTGAGATACCTATAACCGTACGTGTAACATATGTTACGTACGAATTATA
TAGTACACTTTCGTCTCAACACTTAATGTGTTTTTGGGTAATACAGTATT
GGAATTGAATAGAGAATATTAGAAACTTAATAAAGACATTTTAAATGGTT
TTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGGAGGCATACTC
CATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCTTCAATTACT
TCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTTCGTACTGCT
CTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAACGATATCTT
TGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTCATGGCTTCT
TAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAACATATCAAA
GATAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTCACCGAACTGAC
AGAAGACCAGACCAATGATATACGTGAAGCATTTAGTATGTTTGACCAGG
ATGGTGATGGAACAATTTCAATGGAAGAATTACGTGAAGTAATGACCAAC
CTTGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATGTTAGAAGACGT
AGATACAGACGCCGAAggaaatttggattttgaatcCTTCAAAAAGATTA
TGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAATGAGAGAGGCG
TTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTCAGAAGAATT
ATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAGAAGAAGTGC
AGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAAATCGAGTTC
GCTGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTAAATAAGGATA
GAAAATCATTACGGTGGATACTCGATCAATCACGCATAAAAGTTGCATGA
GATGTATGCGAGTATCATGGGCACCTTGCTGGAATTAAcaaagatttatt
ttgaaacttgtTTTGTAAATTATTGTATATAAGATGAAATAAATATTTGC
AAAAATCGTAATTTTTGCTTAAATTATACTTAACGTGGACTTCTAGTT
Run BLAST on NCBI

protein sequence of TCONS_00058482-protein

>TCONS_00058482-protein ID=TCONS_00058482-protein|Name=TCONS_00058482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MVLKKAALMTMKHKLEAYSIFNQEDIEDFRAVFNYFTNGKREIITAKQVR
TALRSLQPKPKDEEINDIFDKITEKKGGEVDFHGFLDALHTAIDKVRKQH
IKDNKDRKKSQAQTFTELTEDQTNDIREAFSMFDQDGDGTISMEELREVM
TNLGQTVSDGDIKEMLEDVDTDAEGNLDFESFKKIMSQTMGATDINKEMR
EAFAFFDQDGDGTITSEELWQCMKKLGEDLTLEEVQDMLKEADADGNGEI
EFAEFVKLLTGPMKTK
Run BLAST on NCBI

transcript from alignment at scaffold_311:1024365..1028302+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058482 ID=TCONS_00058482|Name=TCONS_00058482|organism=Clytia hemisphaerica|type=transcript|length=3938bp|location=Sequence derived from alignment at scaffold_311:1024365..1028302+ (Clytia hemisphaerica)
TATATCTTGATGTATTAAGATCTAGATAAAATCGAAAAGCATATTACATA
TTTGAGATACCTATAACCGTACGTGTAACATATGTTACGTACGAATTATA
TAGTACACTTTCGTCTCAACACTTAATGTGTTTTTGGGTAATACAGTATT
GGAATTGAATAGAGAATATTAGAAACTTAATAAAGACATTTTAAATGGTT
TTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGGAGGTTTGTAT
ATTTTACAGACACGCTTTGTGTACGTTGtacatctaacgttatatggacg
ttgtgaacgttagataagcGTTGAAACAATACTTTGTgtaccgtaggatt
gctaaactttGTCATTCCCGGGGAAACATCCCTGACACACTTAGAAGTTC
TCTCCGCTGTTTTTCACGGGCACACCGGGAAAATATTGAACTTTGCTGCG
GTGTGCTATTGGTGTGGACAACATAAAGACAAAGACATAACGCCGTAAGA
AAATACCTCGTAGCATGCTAAAGCCAAAGTGTTGGTCTTTTTTCGTTGTA
AAGTGGCAATAGGAAAGTTCAGctgggaatgagaaagtttagcTATCCTA
CAGTAAATTTTACAGAACCAAAGTGTGTATATTTTACAGAACCGAAGTGT
TTAATTTACAGAACTGGGAGATTCGGATACAACGTAGTGAGTCATTGACT
TGGAGAAGCCTttattaaaattgtattttctgtAATATTTTCGTTGTTAC
GGTATTAATTACAGCGTAGTTCTAATAAGTCTACAAAAAGACCATCGTAA
GCCGTTAAAAGTGGCCTTCCCCGGGGGTTGTGGGGTGATCGTTAAAGCAC
ATGACATCCCCTGATCACCTGATCAGAACACATTGTTGAGCTCATTACCT
CTCTAGTCTCAgtcattcaaatattttctttgtttcacaGGCATACTCCA
TATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCTTCAATTACTTC
ACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTTCGTACTGCTCT
GCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAACGATATCTTTG
ATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTCATGGCTTCTTA
GACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAACATATCAAAGA
TAACAAAGATAGAAAGAAGAGCCAAGCTCAGGTATTCTTATCATTCTGTT
TTTCTCAGTTAACACATTCACTGagcccttttttagaaattgaaAGTCTG
ACCTCCtaaattttcgtcaaaattttgaccaatcgACGCAGAGCTTCcct
cgaaattcaaaaatgcaAGCAAAAGTTTCTTGTATCCATGGTTTTAGCCC
TTTGATGCACTACTGGTATTTTGGCCTTTCTTCTTTAAGAAAATTCAATA
AGTTTCCAATTCCAGTTTTTTTCTAACAAAATTattcaacaaagtttgaa
gCATATTAGCTCATTTTTGAAGTCCATTTTCTATCTGAGACAAAAAGCTT
TGCTTTGACCTCTGTACTATAGTATTGACAAAATTATCTTGAAATATGAG
GATAGATAGGCCAAAATTGCAAGACATGAAGTCTGAGAAAATTCTTATTG
TTATATTCCTCTTTTCCTGACCACAGTCAACCAGTACCCTCCCATCagcc
aaattttttattttatatgttAAACTGCGCAATAAAAAGCTTTTCGTCAA
CAGGCTAGACGacagtttgttttgatataaaCTTTACTTTTTTCAGACAT
TCACCGAACTGACAGAAGACCAGACCAATGATATACGTGAAGCATTTAGT
ATGTTTGACCAGGATGGTGATGGAACAATTTCAATGGAAGAATTACGTGA
AGTAATGACCAACCTTGGTCAAACTGTCAGTGATGGTGACATCAAAGGtt
agaaaaactgtttttaccTCAAAATAAGCGAGATAGTATTAGCTCCAACT
TCAGAATTTATTGCTGTGAGACTTATCTCTTCCATTGTTTAATACTATAC
ACCCAGTATCACAGAACCGTTGAAATCCCTTCCCCACTgtaaaaattggt
caaaacaatagaaaaacgtGTGAAAAAAATACCCAGAAAGTTTACGCTAG
ACAATATTATCTAGTGCTATCAGTATGCATAAAAAAGGGGCCTTCTTttt
aacagctgaaaatattcttgaaaattaataaacgggggggggggGCCCTA
AAAAAGTCCGGagggggtggaaaattttcgaaaaattaacaagcaggggc
ctatttatttggaacctaagagtaacacTTTAAAAGATTCACGCATGGgt
attgagacaggggtgttatgtTCTTTTCGTATCAGAAATGTTAGAAGACG
TAGATACAGACGCCGAAggaaatttggattttgaatcCTTCAAAAAGATT
ATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAATGAGAGAGGT
ATAAGAGTACTATTAATTTTCTTGCTGCTGttatttttgctttatttgGG
TATTTTGACGTTGTTTGcagaattgtttttttatagttgcctcgtataac
tcgaacacgtagGGGAACAATATTTGTTGGAGTAAGGGAGACTTCCAGTT
ATGGGGATAGAATCATAAGGCACTGTTGACTGAAGGGGCCAAAAAACTCG
TTCGAGTTAAGAGGACATTGAgctatagaggttcgagttatggagactca
actgtactATAATTAATCACTTCCACCGAGTTTCCCTTTAAGTCATTAAC
AGCTGTAACAACTGgaccaacctcgtccccgtgcaTCTCAGGCTTTATTT
GCGTTACACTTGATGGACGTCAGAGAATAGCAAGGGTGTTATCTGTCGCT
ATTATCAGTGAGGATAAAAAAGCCGCGATAATATGCAGGGAACGGGGTTG
CcatttgaccatttttaccgTGCGCAAATCAAGCTTTACGGACGAAAACA
TCGTCTACGGGAAAGATTATCAACTTTATCAACTTTTTTCTGTACAGGCG
TTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTCAGAAGAATT
ATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAGAAGAAGTGC
AGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAAATCGAGTTC
GCTGGTAAGATGATATCTCCTAATTCTTCAGTTTCGAacaacacgctttt
ttataaatttggtccAGTTGCCCGTATTGTGTCTATTGTATGCATTTTTA
GGtttgactttttaaaaatgttctggaAATATGCTTACTTTATTCACTTT
TGACTTAGTCATTATAGGGGCCTAAAGTCAGCATTTTCTTAAATCTGAGA
AGGGTGCCGTGAATATCACAGCttgaataaaatattttctcttaaaaaac
ttggcctctgataTTCAGTCAGGGTAGAGATAGAGGGATTGTTTCTAATC
TATTCTAGGCTGTTTGCCAAAATTTAGCCTAATGATTTAGTTTTAAATGC
GATAAACTCAAAAAGCCCTGTTTTGCTAATTAGCGGTGAACTTAGATTGA
AGAATAGTTTTTCCCAACGAGACCATTTTTTGGTTAAGGACATTTGATAA
GTTTCTTCAGACAGTATAGATTAAATCCCGTTTTTACATTTTAGAGTTTG
TCAAGTTGCTTACTGGACCAATGAAGACTAAATAAGGATAGAAAATCATT
ACGGTGGATACTCGATCAATCACGCATAAAAGTTGCATGAGATGTATGCG
AGTATCATGGGCACCTTGCTGGAATTAAcaaagatttattttgaaacttg
tTTTGTAAATTATTGTATATAAGATGAAATAAATATTTGCAAAAATCGTA
ATTTTTGCTTAAATTATACTTAACGTGGACTTCTAGTT

Coding sequence (CDS) from alignment at scaffold_311:1024365..1028302+

>TCONS_00058482 ID=TCONS_00058482|Name=TCONS_00058482|organism=Clytia hemisphaerica|type=CDS|length=4806bp|location=Sequence derived from alignment at scaffold_311:1024365..1028302+ (Clytia hemisphaerica)
ATGGTTTTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGGAGGC
ATACTCCATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCTTCA
ATTACTTCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTTCGT
ACTGCTCTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAACGA
TATCTTTGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTCATG
GCTTCTTAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAACAT
ATCAAAGATAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTCACCGA
ACTGACAGAAGACCAGACCAATGATATACGTGAAGCATTTAGTATGTTTG
ACCAGGATGGTGATGGAACAATTTCAATGGAAGAATTACGTGAAGTAATG
ACCAACCTTGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATGTTAGA
AGACGTAGATACAGACGCCGAAggaaatttggattttgaatcCTTCAAAA
AGATTATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAATGAGA
GAGGCGTTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTCAGA
AGAATTATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAGAAG
AAGTGCAGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAAATC
GAGTTCGCTGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTAAATA
AATGGTTTTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGGAGG
CATACTCCATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCTTC
AATTACTTCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTTCG
TACTGCTCTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAACG
ATATCTTTGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTCAT
GGCTTCTTAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAACA
TATCAAAGATAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTCACCG
AACTGACAGAAGACCAGACCAATGATATACGTGAAGCATTTAGTATGTTT
GACCAGGATGGTGATGGAACAATTTCAATGGAAGAATTACGTGAAGTAAT
GACCAACCTTGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATGTTAG
AAGACGTAGATACAGACGCCGAAggaaatttggattttgaatcCTTCAAA
AAGATTATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAATGAG
AGAGGCGTTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTCAG
AAGAATTATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAGAA
GAAGTGCAGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAAAT
CGAGTTCGCTGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTAAAT
AAATGGTTTTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGGAG
GCATACTCCATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCTT
CAATTACTTCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTTC
GTACTGCTCTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAAC
GATATCTTTGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTCA
TGGCTTCTTAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAAC
ATATCAAAGATAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTCACC
GAACTGACAGAAGACCAGACCAATGATATACGTGAAGCATTTAGTATGTT
TGACCAGGATGGTGATGGAACAATTTCAATGGAAGAATTACGTGAAGTAA
TGACCAACCTTGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATGTTA
GAAGACGTAGATACAGACGCCGAAggaaatttggattttgaatcCTTCAA
AAAGATTATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAATGA
GAGAGGCGTTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTCA
GAAGAATTATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAGA
AGAAGTGCAGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAAA
TCGAGTTCGCTGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTAAA
TAAATGGTTTTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGGA
GGCATACTCCATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCT
TCAATTACTTCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTT
CGTACTGCTCTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAA
CGATATCTTTGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTC
ATGGCTTCTTAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAA
CATATCAAAGATAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTCAC
CGAACTGACAGAAGACCAGACCAATGATATACGTGAAGCATTTAGTATGT
TTGACCAGGATGGTGATGGAACAATTTCAATGGAAGAATTACGTGAAGTA
ATGACCAACCTTGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATGTT
AGAAGACGTAGATACAGACGCCGAAggaaatttggattttgaatcCTTCA
AAAAGATTATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAATG
AGAGAGGCGTTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTC
AGAAGAATTATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAG
AAGAAGTGCAGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAA
ATCGAGTTCGCTGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTAA
ATAAATGGTTTTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGG
AGGCATACTCCATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTC
TTCAATTACTTCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGT
TCGTACTGCTCTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAA
ACGATATCTTTGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTT
CATGGCTTCTTAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACA
ACATATCAAAGATAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTCA
CCGAACTGACAGAAGACCAGACCAATGATATACGTGAAGCATTTAGTATG
TTTGACCAGGATGGTGATGGAACAATTTCAATGGAAGAATTACGTGAAGT
AATGACCAACCTTGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATGT
TAGAAGACGTAGATACAGACGCCGAAggaaatttggattttgaatcCTTC
AAAAAGATTATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAAT
GAGAGAGGCGTTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTT
CAGAAGAATTATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTA
GAAGAAGTGCAGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGA
AATCGAGTTCGCTGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTA
AATAAATGGTTTTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTG
GAGGCATACTCCATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGT
CTTCAATTACTTCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAG
TTCGTACTGCTCTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATA
AACGATATCTTTGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTT
TCATGGCTTCTTAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAAC
AACATATCAAAGATAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTC
ACCGAACTGACAGAAGACCAGACCAATGATATACGTGAAGCATTTAGTAT
GTTTGACCAGGATGGTGATGGAACAATTTCAATGGAAGAATTACGTGAAG
TAATGACCAACCTTGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATG
TTAGAAGACGTAGATACAGACGCCGAAggaaatttggattttgaatcCTT
CAAAAAGATTATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAA
TGAGAGAGGCGTTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACT
TCAGAAGAATTATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATT
AGAAGAAGTGCAGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTG
AAATCGAGTTCGCTGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACT
AAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036846XLOC_036846Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058482-proteinTCONS_00058482-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058482-exon-scaffold_311-1491911889:1024365..1024606TCONS_00058482-exon-scaffold_311-1491911889:1024365..1024606Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1510915933:1024365..1024606TCONS_00058482-exon-scaffold_311-1510915933:1024365..1024606Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1575043694:1024365..1024606TCONS_00058482-exon-scaffold_311-1575043694:1024365..1024606Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1491911889:1025305..1025595TCONS_00058482-exon-scaffold_311-1491911889:1025305..1025595Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1510915933:1025305..1025595TCONS_00058482-exon-scaffold_311-1510915933:1025305..1025595Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1575043694:1025305..1025595TCONS_00058482-exon-scaffold_311-1575043694:1025305..1025595Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1491911889:1026161..1026311TCONS_00058482-exon-scaffold_311-1491911889:1026161..1026311Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1510915933:1026161..1026311TCONS_00058482-exon-scaffold_311-1510915933:1026161..1026311Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1575043694:1026161..1026311TCONS_00058482-exon-scaffold_311-1575043694:1026161..1026311Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1491911889:1026750..1026862TCONS_00058482-exon-scaffold_311-1491911889:1026750..1026862Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1510915933:1026750..1026862TCONS_00058482-exon-scaffold_311-1510915933:1026750..1026862Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1575043694:1026750..1026862TCONS_00058482-exon-scaffold_311-1575043694:1026750..1026862Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1491911889:1027412..1027568TCONS_00058482-exon-scaffold_311-1491911889:1027412..1027568Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1510915933:1027412..1027568TCONS_00058482-exon-scaffold_311-1510915933:1027412..1027568Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1575043694:1027412..1027568TCONS_00058482-exon-scaffold_311-1575043694:1027412..1027568Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1491911889:1028059..1028302TCONS_00058482-exon-scaffold_311-1491911889:1028059..1028302Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1510915933:1028059..1028302TCONS_00058482-exon-scaffold_311-1510915933:1028059..1028302Clytia hemisphaericaexon
TCONS_00058482-exon-scaffold_311-1575043694:1028059..1028302TCONS_00058482-exon-scaffold_311-1575043694:1028059..1028302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1024365..1028302 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97298	1.43423	1.38096	1.15237	3.28956	3.44045	65.4898	64.0308	41.8066	37.1064	23.2235	26.5665	13.2929	11.6534	0	0.00231803	13.2055	16.0462	23.0894	33.2307	13.1817	11.9644	3.5696	9.62028	6.57127	8.61332	3.28567	1.88706	0.199077	0.0284068
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00058482 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.147e-39
Identity = 68/145 (46.90%), Postives = 105/145 (72.41%), Query Frame = 3 
Query:  543 ELTEDQTNDIREAFSMFDQDGDGTISMEELREVMTNLGQTVSDGDIKEMLEDVDTDAEGNLDFESFKKIMSQTMGATDINKEMREAFAFFDQDGDGTITSEELWQCMKKLGEDLTLEEVQDMLKEADADGNGEIEFAEFVKLLTG 977
            +LTE+Q  + +EAFS+FD+DGDGTI+ +EL  VM +LGQ  ++ ++++M+ +VD D  G +DF  F  +M++ M  TD  +E+REAF  FD+DG+G I++ EL   M  LGE LT EEV +M++EAD DG+G++ + EFV+++T 
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148

HSP 2 Score: 91.6633 bits (226), Expect = 7.228e-22
Identity = 55/167 (32.93%), Postives = 89/167 (53.29%), Query Frame = 3 
Query:  255 FNQEDIEDFRAVFNYFTNGKREIITAKQVRTALRSLQPKPKDEEINDIFDKITEKKGGEVDFHGFLDALHTAIDKVRKQHIKDNKDRKKSQAQTFTELTEDQTNDIREAFSMFDQDGDGTISMEELREVMTNLGQTVSDGDIKEMLEDVDTDAEGNLDFESFKKIMS 755
              +E I +F+  F+ F       IT K++ T +RSL   P + E+ D+ +++     G +DF  FL  +       RK  +KD                 D   +IREAF +FD+DG+G IS  ELR VMTNLG+ ++D ++ EM+ + D D +G +++E F ++M+
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM------ARK--MKDT----------------DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147

HSP 3 Score: 78.1814 bits (191), Expect = 5.614e-17
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 3 
Query:  786 EMREAFAFFDQDGDGTITSEELWQCMKKLGEDLTLEEVQDMLKEADADGNGEIEFAEFVKLLTGPMK 986
            E +EAF+ FD+DGDGTIT++EL   M+ LG++ T  E+QDM+ E DADGNG I+F EF+ ++   MK
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 78
The following BLAST results are available for this feature:
BLAST of TCONS_00058482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM32.147e-3946.90Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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