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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058561 ID=TCONS_00058561|Name=TCONS_00058561|organism=Clytia hemisphaerica|type=transcript|length=1114bp GTAACGGAGAAATCgattttgaagaatttcttcaatTGATGACCAACACT GAACGATTTCTGGAAAGTGTCAtCTGCAAAGAACAAGAAGCCGAAGCCAC ACAGCAACGCGAAGTTTTACTCTTCGAAGCATTGACCCAATTCATGAGAA AATCTGCACTACATTCAATCAACGAAATTGTCGGCTATTATcatcaaaaa tacaagaaagtTCAAACGCCCCATGTGATCCGCCATTATGCAGCAGGCGC CCGTCTGATTGGTTTATCTGAGCAACAAATCAGACGCCACCTTGAACAAT TGAGACGTTCATCTATGAGTAATAATAAAAGTCCATACGCTCAACCACCA TACGCATTCATGCATTTATGTAGACAAAAAGAGGTCCCAAGACCTGTTAA ACTTGAAAAGATCACGGAGATCACGGAAGAGAGTTCGCCAACAAAAATTC GTGagaatttgaagattttggtaCCAGATGCACCACGACAATCCACATGC AAAGGACGTATTCGTTTGAAGATTGTATGGGACCAAAAAGAAAAGGATGA GAAGGCTGGTAAACTACCAAGTCTTATACCCACCAAACCTCACGAGACAG CTACATCTCAATCATTACGTAAAAAGCGGCGCCATAACGGCTGGGTGGCA CAACGGTTTAACCCAGCTAACATTCGTGACCATTTACCTATTTTAACAAC AAATAGTGTCAAACGTGAATTGAAAGCCGATGGAGGTGTTCTTATTGATC CAGATAAACCTCATTCGTTGGATTTCGATGACGCGCCTGGATTAAGATTC AAGGTTACAGGTCTTACAAACCAATACTACAAAGGGATTCAGAATCAGAA AAGTAGAGAAGCTGAAACACATTGGCATAGTCTCGGCGTCAACCGGATGC CGTCCCAACATTTACGTGAGTCTTATCGACGTGTATTTAAGGCTTACGTA GATTATCgtaacacccctgtatcatcgCTGTGCTCCAGCTCGATTGCATG ATATGAAATACTTGTCTTTTTAGTGTGTCTTGAgaatataaacaaaaatc gtaaCTAAGCCACTAACTAATTTTATTTCGTGTTTAAAGTTCCATTTCAT TAAGAATTTACAAG Run BLAST on NCBI transcript from alignment at scaffold_311:1028818..1036399- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058561 ID=TCONS_00058561|Name=TCONS_00058561|organism=Clytia hemisphaerica|type=transcript|length=7582bp|location=Sequence derived from alignment at scaffold_311:1028818..1036399- (Clytia hemisphaerica) GTAACGGAGAAATCGATTTTGAAGAATTTCTTCAATTGATGACCAACACT
GAACGATTTCTGGAAAGTGTCAGTAAGTGATACAAGAAATTGTCCAAGTT
GTTTTTTTTTACTTGAAGTTTTCATTATACAGTTCATTGAGTTTGAAGCC
CCAAAGAGGCTAGAGATGAATCTTCAACCTTTCTCAAGCAAGAGTTTCGG
ATTTAGCCCATTTGGGGCTTTGAAATCAACGATACAGTTACAGTCTTCAT
AAATCGAGAGGTTTCTTACGAACCTTTTCATTCAAAAAATAATTCTTGAA
AATGTAAAGATAAAATAACTAAATTAGAAAAAAAAACCTTGGAAAATTCT
TCTGATGAATTTGAAGTAGTAGTTGAAAAATAAAGACCACTATGAATTAG
TGCTTTTTCGTTTTTTTAGTCAAAACATACAGAGATTTTGAAGAAAAGCC
GTTGTATAATTATGATTAGATAGTCTATCCTCGCCCTACAGGCAATTCAC
TATTGCTTTTTCTATTGATGTTTTATTGATTTTTTTTGTAGTCTGCAAAG
AACAAGAAGCCGAAGCCACACAGCAACGCGAAGTTTTACTCTTCGAAGCA
TTGACCCAATTCATGAGAAAATCTGCACTACATTCAATCAACGAAATTGT
CGGGTAAGGATCGAGGCTTGTACGATGATAATAACGCACAAATCTCATTT
AAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAATGGTTCCTACCCTAAAAATTGAT
GTTTTTTCAAGTTTTTATAACCTATGGCACATTTTAAGAGGGTAATCAGC
ATGATCTGTTCCTAACATAAATCCCTATCTTTACAATTGATGGATACTTC
CTATCTATTAATGCGAGATATAACCAATAGGAAAGAAACTTTAACGAATT
CGAAAGGAAATTCAATTTACACTCTTTTTTCGAGCTGCTTAAAGCTGAAT
TTTTAAAATTCATTCCCACAAAATTTAGAAATTTTTTCTTGAATTTCTAA
AATAAATCCCGCAAAATCCCTCCAAATACTGCAAAAGTGAGCCCATTCTA
TTAAGTAAACTTCTATTATTTAGGTAATGGTATTTTCACGTTTTTTCTTT
CTAGCCTTTCGCGAAGTGTTTGATTTGTTTGACAGTAATGGTGGAGGTTC
CATCGATGCGGATGAATTGGACGAAGCACTTCGATCAGCTGATATTCAAG
TTACCAAAGATGAAATCAATGAAGTCCTCTCTTCAATGGATAAAGATGGT
TTGTGCCTTTTTTTTGAAACGACGCTTTCTGACTTTATCGTCTTACTGTA
GGCTAATGATAGCGAGTTTATGTATTTGTGTTTTTCAGTGAATGAGACGG
TTAGCTTCTGATTTCTCTAGAACCTGATCAACTGAGGACAACGGTAAACA
AGCACTTTTTACCGTCCTCGATTATTGTTGATCAAAAGTGCGGGTTTATT
CAAATCGCCTCTGTCACTCTGCCGTCCTCAAAAGTGCCAATATATAAACT
CTCTAATTCCCGATAATCACTTCAGATTCAGATATATAAAAGATGTATAT
AAGGTTGTGATCAGATCAGGGAAAAAATCTCTTAAGAGGAATAATTCAAG
TTACTTATAAAGCGTATGCTTTTTCTGCTAGAAATCTGAGACAGATATTT
AACTAGCTTCCCTGGATATTTCTGAACTTCTACTGACTATAGATAAATTC
AAAATTATGCCATAAATTGCAAGAGAGAAAAACTGTCGAGTGACCAATTC
TAATTTGAAGTATAGTCTTTTAAATAAATTTTGTAAGCAAAGGTCATCTT
GTTCGTAAACATATTTTCGTATCCTCAACAAATTTCTCGTTATTAGATAA
TCTATAAATTTTACTAGTTTCATTAAAACTTCTTTATATATAAATCTTTG
ATAGAAATCATTATACCTTTATAATCTTCAAATTATTGTTATTTTTAGGT
AATGGAGAAATCGATTTTGAAGAATTTCTTCAATTGATGACCAACACTGA
ACGATTTCTGGAAAGTGTCAGTAAGTGATACAAGAAATTGTCCAAGTTGT
TTTTTTTTACTTGAAGTTTTCATTATACAGTTCATTGAGTTTGAAGCCCC
AAAGAGGCTAGAGATGAATCTTCAACCTTTCTCAAGCAAGAGTTTCGGAT
TCAGCCCATTTGGGGCTTTGAAATCAACGATACAGTCTTCATAAATCGAG
AGGTTTCTTACGGACCTTTTCATTCAAAAAATAATTCTTGAAAATGTAAA
GATAAAATAACTAAATTAGAAAAAAAAAACCTTGGAAAATTCTTCTGATG
AATTTGAAGTAGTAGTTGAAAAATAAAGACCACTATGAATTAGTGCTTTT
TCGTTTTTAATCAAAGCATACAGAGATTTGAAGAAAAGCCGTTGTATAAT
TATGATTAGATAGTCTATCCTCACCCTACAGGCAATTCACTATTGCTTTT
TCTATTGATTTTTATTGATTTTTTTTTTTTTTTGTAGTCTGCAAAGAACA
AGAAGCCGAAGCCACACAGCAACGCGAAGTTTTACTCTTCGAAGCATTGA
CCCAATTCATGAGAAAATCTGCACTACATTCAATCAACGAAATTGTCGGG
TAAGGATCGAGGCTTGTACGATGATAATAACGCACAAATCTCATTTAAAC
ATATTTTTGTTACAGTGGAGTCTCCATAATTTGAACCTCTATAACTCGAA
TAAATCCTTAACTCTAATAACAAGTTTATGTTGCCCGAGTTATAGAGACT
CAGAGCTGTATCTGTAATAGTAGGGCCAACCCTTAGGATTTAGAAGTACA
AGACATGCATCAGTATACATTTTTTACTTGGAATTTCATGCTCCATCCGA
TTATAGCAAAAAAAATTTGAATTCGTCTCTTGAATATCGTCAATGTTTTA
CTGATTTTGGAGGTGACGAGTTTTGCCTATAACGCCAGTTTTTTACTTAT
TGATAATTTTGTAAAGCCTTATTCGCGGGCCCCCTTTCAAAAATATCTCA
AAATCTCATCTACCTTCGAACCAATTATATGCATGTGTTTCATGAATGAT
GGATCCATGAACATTAGTTAGGTGAAAGGTGAACGTTGAAAGAACGTCTT
GTAGATTAGCTCATACGAGCTAGATGTATACTTTACATACATTGGTTGTC
ATACGTGGCAAAAGCTGAGATAAGTTTATACGTGTTTTCTGACTAGAGGA
ATCCTCATCTGATATATATTTGAATGATACGCTACACGTTTTTTTTATAA
GGACATTCAAAATTTTCTTAAAATTGCTTACTTTTTGAGTTTCAAGCCTA
AAAATGTTCTTGTCATGTTCTTATTTTCACCATTTTATTAGTAATTTGGT
CCATTTTCCTAAGAAATTGGATGTTTTCAAGTCCGTGAAGCCTTAAAATG
TTATCCTTAAGATCTTGTTCTTAATATTTTGACCATCGAAGCCTTATTTT
CGAGCTTGTTTTCTTATAAAGTTTGTTCTTATGAAAAACGTGAAGTGAGA
CCGGCCGTTTAGCTTCAAATTTTGAATTTACGCGCTCGATTATTTTCAAA
ACAATTTTTTTTCTCCAACATCTCAGACACAGTTCATGTTTGCAACTATT
TATCAAATCTTTAACAGCTATCAAATAAACATCTATTTTTTATTTTTTCT
AAAAAATTTCGGATTTCCTCTAATTAATTAGGTTAACAGTGTGACTTTAT
AGAATCTGTGATAGAAGTTTTGTTATTTAAAAAAGTAAAGTAAAGAATAA
TGATATATTGTATCTAGTTTTGGGAAATATTTTGCCGAAGAACCATGAGT
CCCGCACTCATGGTTCTTCGAACTTGATTTAGTAGAAGATTGGTTTAGGA
AATCCCATGAGGTTTTTTACTCAACAGATTTTAGAAGAAATCTTAAATTG
TTAGCCCTTCTCATATATATTATCCACTTTTCTTTTTAAGCTATTATCAT
CAAAAATACAAGAAAGTTCAAACGCCCCATGTGATCCGCCATTATGCAGC
AGGCGCCCGTCTGATTGGTTTATCTGAGCAACAAATCAGACGCCACCTTG
AACAATTGAGACGTTCATCTATGAGTAATAATAAAAGTCCATACGCTCAA
CCACCATACGCATTCATGCATTTATGTAGACAAAAAGAGGTCCCAAGACC
TGTTAAACTTGAAAAGGTAGCTTTTTATTTTAACACACTTTGTCATGTTT
ATCAATCACTTGCTAACAAATTTTGATTTTATCTCCAGTCTTATTTTTCG
AGATTATCTTATGGCTTAATGTTCTGACAATTTTAGCAAGACTGTCTTGA
AGTGGGCCTCATTACAAACCTTTAAAAAAAAGAGAATATCCCAAGACATA
TTTGCTCAAAAATTATCTAAACTCAGAAGAAACTTTCCGAATTCTTTTAA
ATTCCTAACTTTGAATTAGCAGAGATTTGTTCAACTCCAGGGCCGATTTT
TATAACCCAAGGTAATTCTATACACATGCTTTCTTAAATTTTTATAAATT
TTGGCTCAGGTCTGACTGTTCTTAATTTTTTGAAATTTTATGAGATGTTG
AAATCAGTACTTTTTGGTAATATTATAAAATCTTTGGCTAAAATTGTGTT
AATTTGTTCTTAAGTTTGGGCCAATTTTGAGCCTCTTGTTCTTATAAAAC
TATTATTCAGAAAAAAACTGTTCTTCCTATAAAACTATTCTTATAAAAAA
AGCGTGTATTAAGTTAATTGATTTTTGGAACTTCACTACAAAATAAGAAC
ATCCAAACATAATTGTTCTTCTTTCGTTTTTTAGATCACGGAGATCACGG
AAGAGAGTTCGCCAACAAAAGTAAGGAGCTAAAATTCACGAAATGGTCCT
TCTCTTACTTTTACAACGATAGCATTGATAGTGAATTTGCTCAGGCTTTT
TGAGATATTCATCATGTGTTTTAAAAGATATTTTTTAGTAAAATTATACA
TTACTATCCTCTTTCAAAAAATGACACCACCAATTTTATTAATACATGAC
CCTCAATATGTCGGTCAAATTTGAAAACACTCAAATCCACAGGAAAAGAT
ATTTTACTAAATTTAGATTCGTGAGAATTTGAAGATTTTGGTACCAGATG
CACCACGACAATCCACATGCAAAGGACGTATTCGTTTGAAGATTGTATGG
GACCAAAAAGAAAAGGATGAGAAGGTCAGTAATGTAGTAACCCATAGTAA
CCATACCAAGCAGTCGTACCCGTGTAACATAGTCCTTATATGCTGTTGAC
GGTGGTTCCTTTTTGTCGCTTTTTGACCTCTTGTTGAGGATCGGCCAAGT
AGAGAAGCCTCAAATTCCGATTTTTTATTCACACAGTTCACTTGGAAACA
CTTTCCGTCATTACTTTTGAACCATTTTCAGCTTAAGGGTATTTGGTGAT
TAACTTATATGCCCTTTTTACACCGGCCCATATTGGTGTTATTTTTGGGC
TCGCTGCGTAATAAGGACCGGTGTTAAAAGGGCCAGCGTAAAGGGCTAAG
ATTTAGCAATTTTTACCTAAAAGCAGCGCTAATTCTTTATCATTATTTCT
CAATTTAAAGGATTTATGGTATGATTCGCAATCGAAAATTATCCATTGTT
TTACTCCATATTCAAAACTTCAGTGAAATATTTAATATTTTTAAAATCAG
TGATTTTCGATGGAATTTTCAAGTTTACTACTGAAAAATGACATTTTATT
TATTATTTATATTATTTATAATTTGAAGCATAAGTAGCCATTTTTACAAT
TTTTTTGGCGTAATTAACAGCCCTAATTGGCGTAAGACCAAAATTAGGCT
GTGGCGTAAGGGCTGACGTAAAAGGGACCGGCGTTAAATTGATGTTGCTG
TAAATGATTGTTGCCATTAGTATAGTGGACACATGGCCCCCGGCGTGCTA
ATCGAATTGAGGGGCCAAAAAAATATGTCCATGGTTGGGCGGTGAAGAAA
ATTTTCGACTTTTCACCCTTATTTCACCCCCTCTAAACGGTATATATAAG
ATTTTTTAAAGCAAAAAAAAAAACTTTGCAAAATATTGGGGGCCATGGGA
CAACACTCCTCCAAATCTTCTGTAAGCTTGTACGCAGCTGTTTCTATTAC
AGTATTTTACAGTATTACAGTATTATACTATTTTTCACCTGATCCAATTA
TTTATCCAATTTTCCTGTTCCTCTTTGTTACTGCTCTTGTTCTGTTCGTA
GTGGCCCTTTGTGGAAACAATTCTTGAGCTGTCTAAAAGCTCAATGATTT
TTGGGAGCCAGCCACTTAAAACATTCGTTATTATTATTATTAGTATTCCA
CTTGGCAAATAATCATTCTAATAATCTCGATTTCTATTTCCACTTATGTA
GGCTGGTAAACTACCAAGTCTTATACCCACCAAACCTCACGAGACAGCTA
CATCTCAATCATTACGTAAAAAGCGGCGCCATAACGGCTGGGTGGCACAA
CGGTTTAACCCAGCTAACATTCGTGACCATTTACCTATTTTAACAACAAA
TAGTGTCAAACGTGAATTGAAAGCCGATGGAGGTGTTCTTATTGATCCAG
ATAAACCTCATTCGTTGGATTTCGATGACGCGCCTGGATTAAGATTCAAG
GTAAAAATTTAATACACACAGCCTCGGCCAAACTCTAACCGAGTCATTTT
GCTCGTTTCTAGTAGCGCTCACGATTGCACCACGTCCATCAGTAAAATCA
AAAAAGTGATGAAAGTGACTCTGGGTACGAGATTGAGTCTCAGCTATTTT
TACTTTTTTCAAGGCTTTTAAATGGGCCTTAAAAGATCCTCTTTTAATGC
TTGATAGTATTAAGCAGAGGTAAAGTTCAAAAACTGGTGCAAGACTTTGA
GTACTATATATTTATCTAGTGGCTGTCGGCTGAGCTAGGAATGAAGGATC
CTATCCCCTTTTCTATTTGCGCTAGAGCTGGGAAGTTGAATGCTGAGGTG
GAGCGCCACACCTACTCAACTCTATCAGATTACCCAATCGAAGCTACTCA
TTCACTGAGTTGGCAGTGACCGGGAATCTAACCTACAACCCTTGAATTGT
AAGGTAAATGCTCTGTCGACTGACCTACCCGGCCGTTGATGAGTTAAACA
GTTTTCTCTTCGTCTTTCTAGGTTACAGGTCTTACAAACCAATACTACAA
AGGGATTCAGAATCAGAAAAGTAGAGAAGCTGAAACACATTGGCATAGTC
TCGGCGTCAACCGGATGCCGTCCCAACATTTACGTGAGTCTTATCGACGT
GTATTTAAGGCTTACGTAGATTATCGTAACACCCCTGTATCATCGCTGTG
CTCCAGCTCGATTGCATGATATGAAATACTTGTCTTTTTAGTGTGTCTTG
AGAATATAAACAAAAATCGTAACTAAGCCACTAACTAATTTTATTTCGTG
TTTAAAGTTCCATTTCATTAAGAATTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058561-exon-scaffold_311-1575043694:1036328..1036399 | TCONS_00058561-exon-scaffold_311-1575043694:1036328..1036399 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1575043694:1035747..1035858 | TCONS_00058561-exon-scaffold_311-1575043694:1035747..1035858 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1575043694:1032084..1032309 | TCONS_00058561-exon-scaffold_311-1575043694:1032084..1032309 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1575043694:1031430..1031465 | TCONS_00058561-exon-scaffold_311-1575043694:1031430..1031465 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1575043694:1031076..1031183 | TCONS_00058561-exon-scaffold_311-1575043694:1031076..1031183 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1575043694:1029650..1029898 | TCONS_00058561-exon-scaffold_311-1575043694:1029650..1029898 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1575043694:1028818..1029128 | TCONS_00058561-exon-scaffold_311-1575043694:1028818..1029128 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1510915933:1036328..1036399 | TCONS_00058561-exon-scaffold_311-1510915933:1036328..1036399 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1510915933:1035747..1035858 | TCONS_00058561-exon-scaffold_311-1510915933:1035747..1035858 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1510915933:1032084..1032309 | TCONS_00058561-exon-scaffold_311-1510915933:1032084..1032309 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1510915933:1031430..1031465 | TCONS_00058561-exon-scaffold_311-1510915933:1031430..1031465 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1510915933:1031076..1031183 | TCONS_00058561-exon-scaffold_311-1510915933:1031076..1031183 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1510915933:1029650..1029898 | TCONS_00058561-exon-scaffold_311-1510915933:1029650..1029898 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1510915933:1028818..1029128 | TCONS_00058561-exon-scaffold_311-1510915933:1028818..1029128 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1491911889:1036328..1036399 | TCONS_00058561-exon-scaffold_311-1491911889:1036328..1036399 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1491911889:1035747..1035858 | TCONS_00058561-exon-scaffold_311-1491911889:1035747..1035858 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1491911889:1032084..1032309 | TCONS_00058561-exon-scaffold_311-1491911889:1032084..1032309 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1491911889:1031430..1031465 | TCONS_00058561-exon-scaffold_311-1491911889:1031430..1031465 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1491911889:1031076..1031183 | TCONS_00058561-exon-scaffold_311-1491911889:1031076..1031183 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1491911889:1029650..1029898 | TCONS_00058561-exon-scaffold_311-1491911889:1029650..1029898 | Clytia hemisphaerica | exon |
TCONS_00058561-exon-scaffold_311-1491911889:1028818..1029128 | TCONS_00058561-exon-scaffold_311-1491911889:1028818..1029128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_311 | supercontig | scaffold_311:1028818..1036399 - |
Blast
The following BLAST results are available for this feature:
|