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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058488 ID=TCONS_00058488|Name=TCONS_00058488|organism=Clytia hemisphaerica|type=transcript|length=2323bp
GTAAATTATCAATCAAATAActtaaaaagagagagaaaacagAAGAAACG
TTTCACGTACCTGTCACACATTTGTGGCGCTGAAATTTGATCCCAATGGG
GAGGAAATTAGAAAGATNAAATGAATCTTTGTTATTTAAAACGGTAGTAT
AGTATACCAGCAGTAGTATATATCACTAACAGTTACAGAATAATTATTAC
TTTATATAGGGATTGTTGAGTTTATCGAGAGATCACGCGAACCTTAAGGA
GGCTTCTTAGCGGTTTGTGTAATAGCGTTATCAAGACTTTTGGCGTGATG
TGTGTAATTCGAGGTGTGGTTAATCTAATCTtatcctttgcattggagtg
ccccacgaggtttagaattaaggggaaccagctcaggcccgtgtggagct
cagaataagcttaatcaAGACTCCAGGTGATTGAAAAATTGAGGCATGAT
AGCGTGATTTGGGCTTTGCGTGATTGTgataatataaaaaaactaaCGCG
ATGGCTTATGCGGCTGGACGGGTCTATCTCCTCAACACAATTATCACGTG
TTAAGCTAATGATTTGAAAGTCACAAGCCTCTCAGTTGAAAGTTAAAAGT
CCATCTCTGAGTAAAATTTGTTTCCCAATTTGTAAAAAGTAGAAGCAGGA
TGTTTGCTCAGAACCAAAGTCAAAATCTAGCAGATATCCTCTTTTCTGTA
GAAAATGTCTTTACCCGAAGTACTGTTTGAAGGCCAACTGTCTCCTAACT
GTTTCCTTATCATTTCAGTAGAGGATTtcatatttgtttgtttgtttgtt
ttgattatgcAATTCCCTATTTGACATGACGGAACACGGGAGAggtttta
aaaataaacaatctaAAAGTGACTAACGAGGCACCCTTGATTCTCTATAA
AAGCTAACTTCTTTTTCACATCGAACTTCCAGATCAATTGAGCTACGATA
GAGTGTTTCTTgctttttaaattatttatcaACTTAATTTTTTGGTCGTC
TAAGAAACAAAAGAGAATTGAATATATTATTATCTCTCTCTAaacgaaaa
atctttttttcttgatcTGTTATCCAAAAGGAGGAACCCAACaatttttt
ctcttctcttaaAACATAAAACTGACTCTCTCGTGCACGATAGTTTTTTC
GGTGATGTCTTTTCGAGGGTGTGTAGCAACCCTTGTGTTTTTAGTTGTTT
GCTGTTCCAGCATATCAACGTTACTTTTTACAACATCGGAAAGCGTAGAG
CTTCTCATCCCAAGACAAAATGAAAGCAGTTATTTCATCCTTTCAAACAA
CAAACATTTACTCCCTGGACATGACATAATCATCAATATTTTACTGGCAG
TCATATCTATTTACGGGTATTTTCTCATTCGCAATCAAGAGAAATGGAAT
ATAGCTTTGAAACTCAACCATTTTCTGAAGAATATTGTACTCGCAGACTG
GCAGGTTAGCTTTCattatttgtatttttgtattttttttatgtAAGACT
CGTCCACttttgcattgtagcggtagcagcaatctaacgtcacctTGCTA
CAAAAGTGCTCTGCgctttttttcaacaaaaaaagtgcatttttcgGGTC
TTCGATAAagcagttatcagacattttcCTTACAATGtgaaaatatttca
ctcgttccagatttttcgtatattttcctcgcctataGGCTCacttgtac
ggaaaaatctcgaaactcgtaaaatatttctcattttatactcgcaactg
tccgataactattacatatttaACGATAGTTTGGGGAATTGTGCCATATT
TACAAAAGGTTATTGCTTAATCTCTTAGACTTAGCATTCATTATTATCGC
GCGTTGCTAGGGGaggaaattttcaacttttgattgACAAGCGAAAAGAG
CATTGTggtaaattcatttcaaactTCCTTTTTTCAGGTCGAGGTGCTAC
GTAAATTACCTACACGTTACACGTCACGTATTTTCGGGCGTATTTCTAAC
TTTTACGTACCATGCTGTCTACGTCAacctctttttggcttttacGCTTA
TATGTACCGTTGTAATTTGGAAGAAGCTCTCGTTTCCGATTTGACAGCGT
ACACAACGTTAACGGATTTCTTTACACGTAAGCTGAAACCGGGCGTACGT
AAGATTGATACTGACGTGGCTATGGTATCACCAGCCGATTGTACTGTCCT
CTCCTTTGGTGCATCTGACTGCGATGGTGATCAAAACATCCAAATTGACC
TAGTCAAAGGGTTGACGTATCCACTCAATACTTTCATTGGGCCTGACCAT
GACATGTTAAATGAGATATGTAA Run BLAST on NCBI transcript from alignment at scaffold_311:1172809..1176523+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058488 ID=TCONS_00058488|Name=TCONS_00058488|organism=Clytia hemisphaerica|type=transcript|length=3715bp|location=Sequence derived from alignment at scaffold_311:1172809..1176523+ (Clytia hemisphaerica)
GTAAATTATCAATCAAATAActtaaaaagagagagaaaacagAAGAAACG
TTTCACGTACCTGTCACACATTTGTGGCGCTGAAATTTGATCCCAATGGG
GAGGAAATTAGAAAGATNAAATGAATCTTTGTTATTTAAAACGGTAGTAT
AGTATACCAGCAGTAGTATATATCACTAACAGTTACAGAATAATTATTAC
TTTATATAGGGATTGTTGAGTTTATCGAGAGATCACGCGAACCTTAAGGA
GGCTTCTTAGCGGTTTGTGTAATAGCGTTATCAAGACTTTTGGCGTGATG
TGTGTAATTCGAGGTGTGGTTAATCTAATCTtatcctttgcattggagtg
ccccacgaggtttagaattaaggggaaccagctcaggcccgtgtggagct
cagaataagcttaatcaAGACTCCAGGTGATTGAAAAATTGAGGCATGAT
AGCGTGATTTGGGCTTTGCGTGATTGTgataatataaaaaaactaaCGCG
ATGGCTTATGCGGCTGGACGGGTCTATCTCCTCAACACAATTATCACGTG
TTAAGCTAATGATTTGAAAGTCACAAGCCTCTCAGTTGAAAGTTAAAAGT
CCATCTCTGAGTAAAATTTGTTTCCCAATTTGTAAAAAGTAGAAGCAGGA
TGTTTGCTCAGAACCAAAGTCAAAATCTAGCAGATATCCTCTTTTCTGTA
GAAAATGTCTTTACCCGAAGTACTGTTTGAAGGCCAACTGTCTCCTAACT
GTTTCCTTATCATTTCAGTAGAGGATTtcatatttgtttgtttgtttgtt
ttgattatgcAATTCCCTATTTGACATGACGGAACACGGGAGAggtttta
aaaataaacaatctaAAAGTGACTAACGAGGCACCCTTGATTCTCTATAA
AAGCTAACTTCTTTTTCACATCGAACTTCCAGATCAATTGAGCTACGATA
GAGTGTTTCTTgctttttaaattatttatcaACTTAATTTTTTGGTCGTC
TAAGAAACAAAAGAGAATTGAATATATTATTATCTCTCTCTAaacgaaaa
atctttttttcttgatcTGTTATCCAAAAGGAGGAACCCAACaatttttt
ctcttctcttaaAACATAAAACTGACTCTCTCGTGCACGATAGTTTTTTC
GGTGATGTCTTTTCGAGGGTGTGTAGCAACCCTTGTGTTTTTAGTTGTTT
GCTGTTCCAGCATATCAACGTTACTTTTTACAACATCGGAAAGCGTAGAG
CTTCTCATCCCAAGACAAAATGAAAGCAGTTATTTCATCCTTTCAAACAA
CAAACATTTACTCCCTGGACATGACATAATCATCAATATTTTACTGGCAG
TCATATCTATTTACGGGTATTTTCTCATTCGCAATCAAGAGAAATGGAAT
ATAGCTTTGAAACTCAACCATTTTCTGAAGAATATTGTACTCGCAGACTG
GCAGGTTAGCTTTCattatttgtatttttgtattttttttatgtAAGACT
CGTCCACttttgcattgtagcggtagcagcaatctaacgtcacctTGCTA
CAAAAGTGCTCTGCgctttttttcaacaaaaaaagtgcatttttcgGGTC
TTCGATAAagcagttatcagacattttcCTTACAATGtgaaaatatttca
ctcgttccagatttttcgtatattttcctcgcctataGGCTCacttgtac
ggaaaaatctcgaaactcgtaaaatatttctcattttatactcgcaactg
tccgataactattacatatttaACGATAGTTTGGGGAATTGTGCCATATT
TACAAAAGGTTATTGCTTAATCTCTTAGACTTAGCATTCATTATTATCGC
GCGTTGCTAGGGGaggaaattttcaacttttgattgACAAGCGAAAAGAG
CATTGTggtaaattcatttcaaactTCCTTTTTTCAGGTCGAGGTGCTAC
GTAAATTACCTACACGTTACACGTCACGTATTTTCGGGCGTATTTCTAAC
TTTTACGTACCATGCTGTCTACGTCAacctctttttggcttttacGCTTA
TATGTACCGTTGTAATTTGGAAGAAGCTCTCGTTTCCGATTTGACAGCGT
ACACAACGTTAACGGATTTCTTTACACGTAAGCTGAAACCGGGCGTACGT
AAGATTGATACTGACGTGGCTATGGTGAGTTTTTACATTACCAAGGATTT
TTTCAAGCACATTTTCTTGCCACCGTTTCCCTCTAGAAACCTGAGTTTca
ataaatttataaaaacCCGATTATCGGGTGAAGATAATTATCAGTTTTCA
GCTCCCTATAAGCTCTGCTTCTGCATAATATAAACATACCTTTCTGATGC
TTTTTTAGCATTTCATCATTATTTTGTAAATGCTTTAACAAATTTGGTTT
CTATATCCGTGAAGAGTCGCTTGAAAAAATCCCTGTGCACATGTTTCATG
AAATTTCTTAACCACTGACATTTGTTATTGTATGACACTTTCGATATGAT
CAAAACCCGATTCAGTAAGACTTGTTTTGAAAACAAGTTTAGCTAGCTTC
ATTGATCtttttaaaaatccaaaatttgtttATAATCTGATGCAAACCCA
TTTTAAATCAACTATGAACTTTGACCTCATTAACTTTTGATGGAGTGTAG
TTTTATTACAAATCATCCCTCACCCTGTTAATAAGCATCCCTCACCCTGT
TACTAAGCATCCCTCACCCTGTTACTAAGCGTGTCAAATCATAGAACTTA
AATTTCATTTCCGTTATTTACAATGTAAAGTCTGcggaattttttatcaa
atgcaCTTTTGCGCTTGTCAAACAAGTAAGCTTTAGATAGAGAATAAAAT
CTCAAACATTTGTCTCAAAGACACAAAAGAACCATTGCTTGAGCAGGATc
cctattttcaaatttttatcttaaaatcaATGCTCAAATCTAAATTGTAA
GAATAGTACAAAATCATCTATTTCAACGTACCAATTCCCTGCTGGGGCTA
GAGAGAGAGGATAAGCTCGTAAACTTGTAAAAtgaattcaattatttttc
ccATCAAAATGCGTTATCCGCGTGGTTTTCACGCAAACGCCGGACTGAAA
ATTAAATATATCGTTGGGTTTTAAAACTAAAGAAAGCGCTTCAATCTGTC
ATCCAAGATCATGctgttaaaattttgaaaggcttcactttttcttgctg
aagaaaggttgaagattccccTTCGCCCATAGTCAtcataaaaacactgg
tctggaaggcttttgtctctttttattgttaaagatggagcttacgtacc
aaaatcgatttattttgcaaaatttttgatcatgtgattagaaaatagac
caatcccaagaggagaatTTGGTaaattgatcaaaaagtatgcaaatcgc
aacttgccttttgtttgtaacaaaagaaaattgaacaaaaagctacaaca
atacattgccagaccggggttttttataatggcTATGCTTCGCCTTTAAA
CTAGATGGCTTTTTCTACGATCgcttgaaaaattatttttcaatatacTC
CACTTCTCTCTCTCAGGTATCACCAGCCGATTGTACTGTCCTCTCCTTTG
GTGCATCTGACTGCGATGGTGATCAAAACATCCAAATTGACCTAGTCAAA
GGGTTGACGTATCCACTCAATACTTTCATTGGGCCTGACCATGACATGTT
AAATGAGATATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058488-exon-scaffold_311-1491911889:1172809..1174982 | TCONS_00058488-exon-scaffold_311-1491911889:1172809..1174982 | Clytia hemisphaerica | exon |
| TCONS_00058488-exon-scaffold_311-1510915933:1172809..1174982 | TCONS_00058488-exon-scaffold_311-1510915933:1172809..1174982 | Clytia hemisphaerica | exon |
| TCONS_00058488-exon-scaffold_311-1575043694:1172809..1174982 | TCONS_00058488-exon-scaffold_311-1575043694:1172809..1174982 | Clytia hemisphaerica | exon |
| TCONS_00058488-exon-scaffold_311-1491911889:1176375..1176523 | TCONS_00058488-exon-scaffold_311-1491911889:1176375..1176523 | Clytia hemisphaerica | exon |
| TCONS_00058488-exon-scaffold_311-1510915933:1176375..1176523 | TCONS_00058488-exon-scaffold_311-1510915933:1176375..1176523 | Clytia hemisphaerica | exon |
| TCONS_00058488-exon-scaffold_311-1575043694:1176375..1176523 | TCONS_00058488-exon-scaffold_311-1575043694:1176375..1176523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1172809..1176523 + |
Blast
BLAST of TCONS_00058488 vs. Swiss-Prot (Human)
Match: PISD (Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Homo sapiens GN=PISD PE=2 SV=4) HSP 1 Score: 99.7525 bits (247), Expect = 3.824e-22 Identity = 45/121 (37.19%), Postives = 77/121 (63.64%), Query Frame = 3
Query: 1932 FQVEVLRKLPTRYTSRIFGRISNFYVPCCLRQPLFGFYAYMYRCNLEEALVSDLTAYTTLTDFFTRKLKPGVRKIDTDVAMVSPADCTVLSFGASDCDGDQNIQIDLVKGLTYPLNTFIGP 2294
++V + + +PTR SR +GR++ +P LR+P++ Y + + N++EA V DL Y L++FF RKLKP R + +++SP+D +L+FG +N +++ VKG+TY L +F+GP
Sbjct: 106 WEVALYKSVPTRLLSRAWGRLNQVELPHWLRRPVYSLYIWTFGVNMKEAAVEDLHHYRNLSEFFRRKLKPQARPVCGLHSVISPSDGRILNFGQV-----KNCEVEQVKGVTYSLESFLGP 221
The following BLAST results are available for this feature:
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