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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058494 ID=TCONS_00058494|Name=TCONS_00058494|organism=Clytia hemisphaerica|type=transcript|length=721bp
tACGGACCTTGTGGACCAATAGATTAGCTCATTTTTGACTAATCAGAGCC
GTGTATTTTAAGGGCATTGGGCACTACTTTCGATATTTCACTCCTGTTCA
GGGAAAAAAACTGGAAGAAGGAAGCACCACACTGACACGAAAAAAGGCAG
CAAAGTATTTAACGTTGAATGTTTTTTAGCAAACATGACAGAGgCTTATC
TGCTTCTAAATTGGAGATTATCCTTGAGAAATGGAAGCAATATAATAATG
TTCTCACACGATCAATGGCAAATCAAGTTTTCAATATCAATCAACTTGTG
GATATGGATTGGAAATTTGGAGTAACTGCCGCAACATCAGATGAAGGTCA
AGTCGGACACTCTTTCATTCAATTAAAACTTGTGATTGACAaaggaaaca
aagaaaatgaaaacgtttGTTTAGAACTGACTCTACCACAATTTTATGAA
TTTCTCCATGAAATGcaaaaggcaaaaaatagttTAGAGTTACTTGGTTA
AAAGGTAAGTAATTTATATGTAGATAGAGTTATAATACTATGttactttt
gtatttttcacaatcattatttttttcagtggaACCCAGCTTAGCAGTTT
TACAATTTTATcaacagtttttcttttttgatggaAATAAGAATACCTTT
CTCATTACCATACCAGCTTCTTTGATTAGTACTGCAACTTAGTTACTGTG
TGGCCTGgtttattttgacat Run BLAST on NCBI transcript from alignment at scaffold_311:1255243..1263407+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058494 ID=TCONS_00058494|Name=TCONS_00058494|organism=Clytia hemisphaerica|type=transcript|length=8165bp|location=Sequence derived from alignment at scaffold_311:1255243..1263407+ (Clytia hemisphaerica)
tACGGACCTTGTGGACCAATAGATTAGCTCATTTTTGACTAATCAGAGCC
GTGTATTTTAAGGGCATTGGGCACTACTTTCGATATTTCACTCCTGTTCA
GGGAAAAAAACTGGAAGAAGGAAGCACCACACTGACACGAAAAAAGGCAG
CAAAGTATTTAACGTTGAATGTTTTTTAGCAAACATGACAGAGGTATCAA
CTTCATCAATAAGTTCTGCAGAGGTTCAAATTTTAAATAGGTTTCCAGAG
GAGTCGTTTAATGAATTTATTCAACTTGTATTTGATTTTCTGTTAAATCC
GAAAGACGCATCCAAACTTTTGGAtgatttgcatatattttgTGAGAATG
CTGGGGCATCAGCTGGAGCTGTTAAGAATCTAGTAAAATTACTGATCTCA
TATTTGAGggaaaaactgaagaaaaatgtttcaagtaACTCTATCAATGA
TCAACTTGAAAAGCTAGGTAAGATTTTGTATCATCATTAGCGGCAATcgc
aaatattttcatttcgcgtcctcgttgggtctaaaaagtgagtcggtcgg
tcgtaaaaaaTTTCGGGTTTCTATTTTTCCATCCATGTTTGGagtgcatt
cttggaggaaaATGCCatccagccagcagccaaaacaaccgcgtgtaatg
gcagttagtcacactaggaaatcaagctttcaaaaaaaaacaacaacatc
agtcatctacaggatgtatttgcaaaacaaggatgagagttacctgaatc
aagtttgcaagagAATTAtaataattaaaatttgaaagtttgaaacaaaa
tgaaacgtgcagcagccaaaatcacccaatcaaaatttgtcattcaattc
ccaagacagcgcttcgatttttaaggccttgtttatataccctaaagtaa
aaacaattccgcacatgtaaatgggtcagtgtttgaggtccggcaaaatt
tttgggaaatagcctatccggtaGTGCGCGTATCTAGGTGGATTCCGTCT
cccctgtagatctttttcttgggaagttgatcttcaaattagttctcaag
aTTGGCTAGGCTCAAATTTTTTATCTATGACTCAAACTTTagcagtgcgt
cacaaacagccacataaacaaaactcaacattctcacaaaagttgtcttt
ttgatttccaaaacatttgtctaaagcgttcacttccacaataatttatg
taattgcaatttcggtcagtccacagtcggcttcaacatatacacgtgtt
tttatttacgtgaccgaagtgcctactaaaacaatccgggggtaagtggc
aaagaaacacagcagattattcgtaaagtaaagaaatatcttttggcatt
gacaatcaaatataatatattatattatatttccttaattaaaaaatcaa
aaattcatttttcatttgcacaaaaataaaaataaaagaataatgaatta
atattacatactaagacgcccccgtcttttactctcttttaatttccgat
ctcggaacgtgcaatAATACGCCCGTctgcccaatatccacccaatcagc
ttaaattcactttaattgtcctttgactttcaaaaaatagtacagtattt
aaaaattatgaattttaataattacaaaaaacaaaaagtttgatacttca
ttagtctgcattagtgaaatattcaataaattcctaatttcaattttcag
tgggcgtttttctagggcttcgtttatcacgcaatttttgcgtcacgcAA
ACTTTCTCAGCCggtcgtaataattatgcattgccaaatttggttctcca
ttgtcaagtcaggatcgatggtgacaaaagaaatgattttgtcggtttta
tgcatatattaatttgcaagGTATTTTATTTGCTGCGcaagcgcactttt
cgtagactagtcggaatactttcttttactcgctggattgatggtaactt
ttcatcttcgttatttttaaaatgaagcataaccgaaaaaaaacaaaact
tcaggaagttgcgtatttccagtgagtaaacgattctgacaattaacaaa
attgatgatgattattttttttcggtcaggcaaatgtctcgtattggggg
ttctagtcttgacccctaagcctacgcaagattgaagcgtttgggtaaac
aagacaaaactccaaaaaagctggtgtttttgaagcgcttccgtgcgatc
gaaatatcgctgtttgtgacgcactgtttaggcaatttctcatagttttt
gagaatgttaatttcattaaaaagcgccaggttattttttcatgaatccc
tttagatgttttgccagggggggggggtcttgcagttactccttgacact
atgtggagtaactgcaattttggacattttctacagacaccaccaccctt
gcagttgtTCCaaagtgtactaactgattttaccctcaaaataggtgtat
accacccccaaaaatggcaattttttcactgaattcctcatttttgatac
cattttactgggtacgtcttattaacgaccgttcaagagttaaatatctc
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NNNNNNNNNNNNNgaaatcctactttgacaataatttgcgctgtaccgca
aaatttctaagtccaagtgttgtgattagctttagactgtccaatatttc
ttgtccagaagatttaaaCTGCATTGTTTGCAGTATCTCATAAATTATCA
CCCTAGTAATGTTGCTTAGTTATTTAAGAATAAACAAGTAAGACTGTTAG
TGTACACTATTATAgagatattggacagtctaaaagCTAATCAtgacact
tggacttagaaattttgcggtaaagcgcaaattattgtcaaagtaggatt
tctgaatgagtctaaaaagtttttgaataggNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNgtccactggtggagtaactgttt
tcccaaattttggtttatataccaccacggtagtaattgtcatagtgttt
atataataactgcatgaccccccccctggttttgcagcacatttttttgc
ttgagagtcaggtaaacgatatagcactttcccagcattaatctttgata
cgcatttcggtggaacgctagtgtgactaactgaatgggtggtttaaaat
tatggactttgaacactgtgacctccgacccaaaaatggcgcatgtaatg
ataaacaaagtcaaaattctGTGAATGCACTAGAAattggcaataataaa
atttttgaacgaaggaaagttaactgacagaaaaagtccgacaaatttat
cgactcaccgactcaattctactcaattttcgagagtcggtcgggcgaca
cgaaacaaagatatttgtgattgccttattattattattggcTGTTATga
aattccttataaaaagaagtTCTTCTACAAAAAGACGCTTAAAAAAACGA
CATGGAAAAAGTTGTTCAAAAttaaatcattttattttaacaatttCATA
AACTACGTCACAACCGCGGAGCGCTGacttttttatcactttttctCAGT
CATTTCCATTTGGTttccgtaataaaaagaaagacgtTAATTGTGAACTT
AAAACATGCTTAAAGTCAAGGTACTTCTACTAACTGTCTTTATGTGGGAA
AGTTGCAAGATCACCAAAGATCATCTCAAAAAAAAGATCACCCAGCTTAT
TTctagaaataagaatttttttggccCTGGTTTCACAATGAGGCCCTGGT
ACCAACAATACGTCTACATTAGCACGACAAAATAGCAAgccatttatttt
caatttccgaTAGATTTGATCTctgccaaattttgaaaatccatttttca
agcttttttcACTGAACAACCAACCAACTCATATTTTTTACCCAAAAATG
ATGCCAACACCTGCCAGCACAAGTTTTTTGTGATCGCAACCTTAACAAAA
TTTATGCTAgaagtaattagttattcaagaGACTGTTGTCAGTATagccc
taactcttcatacaaaatttaTGGGAAAGGTATATTAGATTTTGTACCAA
ATGCTGCACACAAGCACTTAGGCTAAAGTCCTAGAATAGCAGGACAAAAA
TTAGTCTTTTGAAGTTTTCATTAAATTTCCACGTATATATAAGATCTTTc
gaattcagtatgtgaatagagcagtaaaaaatgcaacttttctatgtttc
cttttttttgcaaaagtaccaGTGATGAAAAGAAAGggtaaattaaataa
ttgaatataataaataataaaatgataattgaatactgaTGATCCACAGC
ACTATGGCGAAGCTAGAATTGCTTTGTgtactctttgcttgagaaaataa
aatgattgacagattaattttttcacccgtGAGGGAGTTTGCAGGTGTTC
TGGGGGCATGGCTTTTTTCAACTTGCCCAAATTCTTGAACTGTGGCAGGT
TGTTACATCTGACAAATTAATGCTTGTTTTATACTTTTAtttccattgaa
gaatcatactCTGGCTTTTATTTTACTAAGTGCCCTTTATAGTTTTAgag
tatatttgttttgttctcCCAAACCACTATTGACAAACTTTCTCAGGCAG
TCTGAACCATATTTTTCTAGATCTTTACCTTATCACAATATCACTTTGAC
TCCAAAAATTTGCTTTTAGTAAATGACTCCAAAAAGAATTTAAGGCTTCA
ATGGAAAAAAGATTGAGAAcaagttgagaatattttaaggctttggggac
ctTAAACCATCTATTTTATTAGGAAGACAGACAATACTCactaaatgttg
aaaataaaaacatgttaagaactttttagacttaaaactaaaattaagaa
cataattaattgttaaataaaattgttttttattaaggCTTATCTGCTTC
TAAATTGGAGATTATCCTTGAGAAATGGAAGCAATATAATAATGTTCTCA
CACGATCAATGGCAAATCAAGTTTTCAATATCAATCAACTTGTGGATATG
GATTGGAAATTTGGAGTAACTGCCGCAACATCAGATGAAGGTCAAGTCGG
ACACTCTTTCATTCAATTAAAACTTGTGATTGACAaaggaaacaaagaaa
atgaaaacgtttGTTTAGAACTGACTCTACCACAATTTTATGAATTTCTC
CATGAAATGcaaaaggcaaaaaatagttTAGAGTTACTTGGTTAAAAGGT
AAGTAATTTATATGTAGATAGAGTTATAATACTATGttacttttgtattt
ttcacaatcattatttttttcagtggaACCCAGCTTAGCAGTTTTACAAT
TTTATcaacagtttttcttttttgatggaAATAAGAATACCTTTCTCATT
ACCATACCAGCTTCTTTGATTAGTACTGCAACTTAGTTACTGTGTGGCCT
Ggtttattttgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058494-exon-scaffold_311-1491911889:1255243..1255435 | TCONS_00058494-exon-scaffold_311-1491911889:1255243..1255435 | Clytia hemisphaerica | exon |
| TCONS_00058494-exon-scaffold_311-1510915933:1255243..1255435 | TCONS_00058494-exon-scaffold_311-1510915933:1255243..1255435 | Clytia hemisphaerica | exon |
| TCONS_00058494-exon-scaffold_311-1575043694:1255243..1255435 | TCONS_00058494-exon-scaffold_311-1575043694:1255243..1255435 | Clytia hemisphaerica | exon |
| TCONS_00058494-exon-scaffold_311-1491911889:1262880..1263407 | TCONS_00058494-exon-scaffold_311-1491911889:1262880..1263407 | Clytia hemisphaerica | exon |
| TCONS_00058494-exon-scaffold_311-1510915933:1262880..1263407 | TCONS_00058494-exon-scaffold_311-1510915933:1262880..1263407 | Clytia hemisphaerica | exon |
| TCONS_00058494-exon-scaffold_311-1575043694:1262880..1263407 | TCONS_00058494-exon-scaffold_311-1575043694:1262880..1263407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_311 | supercontig | scaffold_311:1255243..1263407 + |
Blast
BLAST of TCONS_00058494 vs. Swiss-Prot (Human)
Match: COMD7 (COMM domain-containing protein 7 OS=Homo sapiens GN=COMMD7 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 7.865e-29 Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 193 GLSASKLEIILEKWKQYNNVLTRSMANQVFNINQLVDMDWKFGVTAATSDEGQVGHSFIQLKLVIDKGNKENENVCLELTLPQFYEFLHEMQKAKNSLE 489
GLS K EKWKQ L R Q INQL+DM+WKFGVT+ +S+ +VG F+QLKLV+ KGN + ENV +ELTLPQFY FLHEM++ + S+E
Sbjct: 100 GLSEEKATYFSEKWKQNAPTLARWAIGQTLMINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGN-QTENVYIELTLPQFYSFLHEMERVRTSME 197
The following BLAST results are available for this feature:
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