TCONS_00058661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058661
Unique NameTCONS_00058661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058661 ID=TCONS_00058661|Name=TCONS_00058661|organism=Clytia hemisphaerica|type=transcript|length=1997bp
AAAGCCCTTTAACGAAAGAACTATTAGTTATTGGTTAGATGGCGTTAAAA
GGAATATGAAATATGTTTGGAATGATGGATCAGAGATGATTTATAAAAAT
CTTGGTGGTGGCAGAGCAGATGAAGATAGTTACACTGAAGGATGTGTTTC
CGTCATGTATGGACCGGGTTTTCTTGTTCCCGAGCCTTACTCTTGGTTGA
AAGGTTCTTGTACAAATTATGGATACCCAATACAATACGTTTGTAAAGGA
AAAAAGCTCAATGaTTCGCCTTCCATTACGACCGCAGCCACCATGGCGCC
TACCCCCGAACCTTTACCATCATTGGTGACTTGGGGCTCGAaTGAATATT
ACTTCAGTGATGTCAAAGTGAATTGGTTTGAGGCTGAAAGATTATGTATT
GCTCGTGGAGGAACTCTGGCAACAATCCTATCTCTAGAAGAAGATGATTT
TATGCTTGACCAACTGACCAAAAGGAAGCCCTTTAACGAAAGAACTATTA
GTTATTGGTTAGATGGCGTTAAAAGGAATATGAAATATGTTTGGAATGAT
GGATCAGAGATGATTTATAAAAATCTTGGTGGTGGCAGAGCAGATGAAGA
TAGTTACACTGAAGGATGTGTTTCCGTCATGTATGGACCGGGTTTTCTTG
TTCCCGAGCCTTACTCTTGGTTGAAAGGTTCTTGTACAAATTATGGATAC
CCAATACAATACGTTTGNGACCGGGTTTTCTTGTTCCCGAGCCTTACTCT
TGGTTGAAAGGTTCTTGTACGAATGATGGATACCCAATACAATACGTTTG
CAAAGGAAAAAATCTCAATGATTCGCCTACAATTACGACAACAACCACGA
TCGCACCAACCACACCATCACAACCTTTGCCATCCTTGGTGACTTGGGGA
GCAATGCAATATTTCTTCAGCGATGAAAAACTGAACTGGTCAGAATCGCA
ACAAAAATGTACTGATCTTGGAGGAACCCTTGCAACAATCTTCTCACAAG
ACGAAGACGATTTTATTCGTGGCCAGTTGCGCGATAGAAAATCACCATCT
GACCGTTCTATCAACTACTGGCTTGATGGTGTCAAAAAGGATACGAAATA
TGTATGGAACGATGGCCTTGAGATGATTTACACTAATTTAAGATCAGGAA
GAACAAACGAAAGCAACTTTAAAGAAGGATGTGTTTCCGTTGGTTATTCA
CCGACTGGTACCATCCCTGTATACTCTTGGTGGACCAATGATTGTGCAGA
TGAAAAATTCCCATATCAATACATTTGTAAAGGAGAAGATCTAGaaaaac
catcaaaaagcgctgttttgaaatttttggaaagtacGACTGGTATTGCT
GTTATTGCTGCAGTCGTTTTAATTATATTGTTGATTATAATTCTGGTGAT
TGCCAAAAAGAGAGGGTGCTGTCGATCGTTGTGTTCATGCTGCAACAAAA
ATACAAACGGTATTGAAAGTGGTATCGATAATATGGCGATGAAATAGACA
TTCGTGAACACGGAAGGTTtagattttaaaggttttgtttttaaataaga
gtaatatcgtttgcttactcatcaatttcaatttacaagTTCTTTTCACG
TTGAATTGATACGGATATGGAGCAAGATTGTTCAGAacgaggaaaagaaa
aacatttttttttattcagcacaatataacaataacaATAGGGAGGCACC
GTCCTGAAATAAGACATatatctgatatgaaacggggaacacttaaaatg
aaaacctttaaaatctGAATAACAGAAAATCTCTGGGAAATTCACCAAGT
CAAGGAGTGAGAGACATACTTTTCCAGCATCTTTTATTAATCAAGATTTT
ATAGAAGTAatttttatattcaaaatttatataaaaGTCGTAATTATTTT
GAACAGGTTatttaaaattgttatttttgttttatatctTTGCGCCTGTG
TATCAAgaatctttaaaatattttttgaccatAATTTTAAATATCCA
Run BLAST on NCBI

transcript from alignment at scaffold_312:80375..85169+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058661 ID=TCONS_00058661|Name=TCONS_00058661|organism=Clytia hemisphaerica|type=transcript|length=4795bp|location=Sequence derived from alignment at scaffold_312:80375..85169+ (Clytia hemisphaerica)
AAAGCCCTTTAACGAAAGAACTATTAGTTATTGGTTAGATGGCGTTAAAA
GGAATATGAAATATGTTTGGAATGATGGATCAGAGATGATTTATAAAAAT
CTTGGTGGTGGCAGAGCAGATGAAGATAGTTACACTGAAGGATGTGTTTC
CGTCATGTATGGACCGGGTTTTCTTGTTCCCGAGCCTTACTCTTGGTTGA
AAGGTTCTTGTACAAATTATGGATACCCAATACAATACGTTTGTAAAGGA
AAAAAGCTCAATGGTTAGTAACACAATGACctaaactttatattttgtat
ttttttcatacAGGAATGGAGGGGAGGCtgcaacaatttcaatgaaaatc
atTCCAAAGACATTTTGATATTTAACCCAACTGCCACTCATATTTGCCAT
AAGGATATGGAACGTTTTAAAAATTACCTAttgacaatatatttttcacc
ccctgtgatgttttttctaaaaaagccaatttttcaatttttctcacGAT
GATTAAGTGAATAAATAGATCTTACAAGGCTGTcgtgtttgatttttttc
tgtgttgATCTATTTcataatctttttttaaacatttagaTTCGCCTTCC
ATTACGACCGCAGCCACCATGGCGCCTACCCCCGAACCTTTACCATCATT
GGTGACTTGGGGCTCGAGTAAGTTTTTAATACATAAAACCTGATCATTCA
AATTCATTGTAAAGCCAATATGGTACCAGGGAAAATTCAATTAATTTGTT
AAATGGTCAGAATGCTTTGGACACATATATCTAAAGAATTTAGCATTTGt
acagttttgataaattttaagtCTCACGCTTTCTTAGCAGCTAAGTACAT
TCAAATTTCATTGGAGGTTGTTATGTCTTAAGACTTATTTTACAGCGATT
TGCTAGTCTAGACTCACTTATCTTCAAGCGCcgttttgaatatattttag
aTGAATATTACTTCAGTGATGTCAAAGTGAATTGGTTTGAGGCTGAAAGA
TTATGTATTGCTCGTGGAGGAACTCTGGCAACAATCCTATCTCTAGAAGA
AGATGATTTTATGCTTGACCAACTGACCAAAAGGTTTGTCTTTGCTAAAT
AccgtttttctcaaaaaagcaCCACGgtgtttttttccatttccagATAT
TAGATGCGGCGGGTTTAGAGGCTGGCgctgcaatttttttttcgtcagcg
gacgcagacctgatttagcggccgaagacctgaattaacggttgaagacc
tgaattaccggcaaaagacctgaattaacggtCGAAGACCTAGCACCTAT
TATCGGATGGCTCTCTTTTCAAATAATACTTTCATATACTATTCTTTCTA
CCATAGCTTAGTTTCATGGCTGTATTGTATATTACCTTTTCTAGGAAGCC
CTTTAACGAAAGAACTATTAGTTATTGGTTAGATGGCGTTAAAAGGAATA
TGAAATATGTTTGGAATGATGGATCAGAGATGATTTATAAAAATCTTGGT
GGTGGCAGAGCAGATGAAGATAGTTACACTGAAGGATGTGTTTCCGTCAT
GTATGGACCGGGTTTTCTTGTTCCCGAGCCTTACTCTTGGTTGAAAGGTT
CTTGTACAAATTATGGATACCCAATACAATACGTTTGNGACCGGGTTTTC
TTGTTCCCGAGCCTTACTCTTGGTTGAAAGGTTCTTGTACGAATGATGGA
TACCCAATACAATACGTTTGCAAAGGAAAAAATCTCAATGGTTTGTAATA
CAGCAACCCCAATTTAAAATCcccaatttttattttttattttctatcca
TTAATATACCCAGTTTTTGGCTTAATTACAGCAGGCTATTTAGCTCATTA
TTCTCACAACTGTGCTAACACAATAAGGCGTTCTGTCGGCCATCCTAGAC
TAACTACCCAACTCCCATGGGTTATCTCGGGCGAAGTTCTATTTACTTGT
CAAATAAACCTCGAAACATATGATCTCCCAAATTAATACTCGGTTCTAGC
CATACAAACTTTTCTGATCAacaactttttttgatctcgtaGCAGCTGCA
GCAGGAAAGTAGAACACCCAGCTTAGTACAAACTGTACTTGATGCCTCTG
TGCTTTATGCTCATCCAATTAAAGAGCAGAGTCAAGGTTCAGTGGGGGGG
ATCCAGGGAAAGAAGTGGCTTTTTCCCCTACATTTGGGTCGACAGCTAGA
GGAAAGGGAGTCTCCGAGTCGCGTTCGACTGCAATTGCAAACTAATTCTG
TTTGAGTTCTCATTAGATTCGCCTACAATTACGACAACAACCACGATCGC
ACCAACCACACCATCACAACCTTTGCCATCCTTGGTGACTTGGGGAGCAA
GTAAGTAAAAGACACTTTTATCAGGAAGAGATAGAACCTACCTACATTCC
TTTATACATATGCTTGATTTGAATTGAACTgttaatttcaatttaatttc
ttttgtgtCATTTTAGTGCAATATTTCTTCAGCGATGAAAAACTGAACTG
GTCAGAATCGCAACAAAAATGTACTGATCTTGGAGGAACCCTTGCAACAA
TCTTCTCACAAGACGAAGACGATTTTATTCGTGGCCAGTTGCGCGATAGG
TCTGTATAACCTTAATATGTTGCAAGGGAGAGGGTACTCTTGCAAAATTA
GGCTCTTGGTATTTGTGGATCTTCACTATTGCTAGAggatagagaaaaaa
aatagaaaatagtcTTACAAAGAATTGATGTTTCACTGTTTTTGTCTCTC
taaagggtcactttttcgtaAATTATTTTACATGTGACTTATGACCAGTA
TAAAATTTCATACTATACACAAATTTACAATAGAAAATCACCATCTGACC
GTTCTATCAACTACTGNGTAAAGTTTTTTAATATACACAAATTTACAATA
GAAAATCACCATCTGACCGTTCTATCAACTACTGGCTTGATGGTGTCAAA
AAGGATACGAAATATGTATGGAACGATGGCCTTGAGATGATTTACACTAA
TTTAAGATCAGGAAGAACAAACGAAAGCAACTTTAAAGAAGGATGTGTTT
CCGTTGGTTATTCACCGACTGGTACCATCCCTGTATACTCTTGGTGGACC
AATGATTGTGCAGATGAAAAATTCCCATATCAATACATTTGTAAAGGAGA
AGATCTAGGTAGGCAAATATATTTCAATAGTGAAAAAATATCTGCATAAT
AGACCTTGAATGTATTATTTTTGGTGTGTGCTTAATTTAGTGGTTGGTCA
AATTGCGATTTTTGGCGGATTGGGTGATTTTAGACATCAAGAGCTACTTG
ATATTTTAACAGCTTTTACTCTAAAATGCTAATTTCATATAGATCcttaa
aagtttttgttaaTTTGGGCGGGTActgtatttaatttggcggattttac
CCAAAACAACCAtatccgccaaaattaatacacttaGGCAGGTCTTTTCT
AAATTATTTTAGTGCAACTGCCTCGATCTGAAACAACTAAAGTGATTGAA
TCCTTTGTAAAAGCAAGTGTATCTCTGTAAATACACCTACTCGACTGTAG
CCACCAATTACCGTCCAAGTCTATTTTTCCCACCTATAGAcgatagaaaa
aggtgtaaaaaaaggattgNTTGaggtgattaaatcccttgTAAAAGCAA
GTGTATCACTGTCATAAATACACCTACTCGACTGTAGCCACCAATTACCG
TCCAAGTCTATTTTTCCCACCTATAGAcgatagaaaaaggtgtaaaaaaa
ggattggatcgagtttagggggataattaaataataaagtggcacgcgcc
tgactgcGCGACTACGGTTAAAAAGGTGTATAGAGTAAACTTCTTATGAA
CTCTTGTGGGAAGCAATTACCTTATTTCATATCTTTTTCTACTCCATAAG
GGTCGAGTTTTGGTTTCTGGCTCACTCGTACCTGAGAGCCTAACCTGATG
ACAGATGGTCATAATTCTCTTACGCGTACGGTAAACCTTTgggagcttca
gcgtggtgtgcagaaacaATGActatctgatctcaggttagccTCATCTA
AACGATAAAgctatttatgtttttttatttctatctttctagaaaaacca
tcaaaaagcgctgttttgaaatttttggaaagtacGACTGGTATTGCTGT
TATTGCTGCAGTCGTTTTAATTATATTGTTGATTATAATTCTGGTGATTG
CCAAAAAGAGAGGGTGCTGTCGATCGTTGTGTTCATGCTGCAACAAAAAT
ACAAACGGTATTGAAAGTGGTATCGATAATATGGCGATGAAATAGACATT
CGTGAACACGGAAGGTTtagattttaaaggttttgtttttaaataagagt
aatatcgtttgcttactcatcaatttcaatttacaagTTCTTTTCACGTT
GAATTGATACGGATATGGAGCAAGATTGTTCAGAacgaggaaaagaaaaa
catttttttttattcagcacaatataacaataacaATAGGGAGGCACCGT
CCTGAAATAAGACATatatctgatatgaaacggggaacacttaaaatgaa
aacctttaaaatctGAATAACAGAAAATCTCTGGGAAATTCACCAAGTCA
AGGAGTGAGAGACATACTTTTCCAGCATCTTTTATTAATCAAGATTTTAT
AGAAGTAatttttatattcaaaatttatataaaaGTCGTAATTATTTTGA
ACAGGTTatttaaaattgttatttttgttttatatctTTGCGCCTGTGTA
TCAAgaatctttaaaatattttttgaccatAATTTTAAATATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036953XLOC_036953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058661-exon-scaffold_312-1491911889:80375..80637TCONS_00058661-exon-scaffold_312-1491911889:80375..80637Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:80375..80637TCONS_00058661-exon-scaffold_312-1510915933:80375..80637Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:80375..80637TCONS_00058661-exon-scaffold_312-1575043694:80375..80637Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1491911889:80964..81041TCONS_00058661-exon-scaffold_312-1491911889:80964..81041Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:80964..81041TCONS_00058661-exon-scaffold_312-1510915933:80964..81041Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:80964..81041TCONS_00058661-exon-scaffold_312-1575043694:80964..81041Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1491911889:81325..81457TCONS_00058661-exon-scaffold_312-1491911889:81325..81457Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:81325..81457TCONS_00058661-exon-scaffold_312-1510915933:81325..81457Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:81325..81457TCONS_00058661-exon-scaffold_312-1575043694:81325..81457Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1491911889:81769..82114TCONS_00058661-exon-scaffold_312-1491911889:81769..82114Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:81769..82114TCONS_00058661-exon-scaffold_312-1510915933:81769..82114Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:81769..82114TCONS_00058661-exon-scaffold_312-1575043694:81769..82114Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1491911889:82641..82724TCONS_00058661-exon-scaffold_312-1491911889:82641..82724Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:82641..82724TCONS_00058661-exon-scaffold_312-1510915933:82641..82724Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:82641..82724TCONS_00058661-exon-scaffold_312-1575043694:82641..82724Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1491911889:82841..82973TCONS_00058661-exon-scaffold_312-1491911889:82841..82973Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:82841..82973TCONS_00058661-exon-scaffold_312-1510915933:82841..82973Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:82841..82973TCONS_00058661-exon-scaffold_312-1575043694:82841..82973Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1491911889:83276..83532TCONS_00058661-exon-scaffold_312-1491911889:83276..83532Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:83276..83532TCONS_00058661-exon-scaffold_312-1510915933:83276..83532Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:83276..83532TCONS_00058661-exon-scaffold_312-1575043694:83276..83532Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1491911889:84467..85169TCONS_00058661-exon-scaffold_312-1491911889:84467..85169Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1510915933:84467..85169TCONS_00058661-exon-scaffold_312-1510915933:84467..85169Clytia hemisphaericaexon
TCONS_00058661-exon-scaffold_312-1575043694:84467..85169TCONS_00058661-exon-scaffold_312-1575043694:84467..85169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:80375..85169 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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