TCONS_00058681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058681
Unique NameTCONS_00058681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058681 ID=TCONS_00058681|Name=TCONS_00058681|organism=Clytia hemisphaerica|type=transcript|length=454bp
CGAACAGATAGGCAAAATGAAAATCAGAATAATGAATAACCTCTTAGCTG
CAAGAGATAATTTATCGGGGGACTATACCTTGAAAGTTAATTAAACTTAA
TAATTATCGGCAATCGTTGTAATAGTTTTCGTACAAATAGCAGAACTAAC
ATCCTCTACTTTGATGATGAACTTCTAATATGCTTGTACATGTTTTAAAT
TACACTCTGATATGGACAGATATTCACGTGGAAAGCCTACTAATCGACGA
CTTTGAGACTTCTTTTGACTGATTTCACGGGTACTGTGATCCACCCATTC
ATGTATATATTAATTAAACGGAACATAGAAGGAGCCGTATATTTAAACTG
GGAATTCCATTTTATTCAACGAAAACATAGATAGACACTAGGCAATGGTA
TACTTGTAAACTATGCTAGCTCTGCTCATCATTATTTATGTAATTCAAGG
AAAA
Run BLAST on NCBI

transcript from alignment at scaffold_312:120408..120861

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058681 ID=TCONS_00058681|Name=TCONS_00058681|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at scaffold_312:120408..120861 (Clytia hemisphaerica)
TTTTCCTTGAATTACATAAATAATGATGAGCAGAGCTAGCATAGTTTACA AGTATACCATTGCCTAGTGTCTATCTATGTTTTCGTTGAATAAAATGGAA TTCCCAGTTTAAATATACGGCTCCTTCTATGTTCCGTTTAATTAATATAT ACATGAATGGGTGGATCACAGTACCCGTGAAATCAGTCAAAAGAAGTCTC AAAGTCGTCGATTAGTAGGCTTTCCACGTGAATATCTGTCCATATCAGAG TGTAATTTAAAACATGTACAAGCATATTAGAAGTTCATCATCAAAGTAGA GGATGTTAGTTCTGCTATTTGTACGAAAACTATTACAACGATTGCCGATA ATTATTAAGTTTAATTAACTTTCAAGGTATAGTCCCCCGATAAATTATCT CTTGCAGCTAAGAGGTTATTCATTATTCTGATTTTCATTTTGCCTATCTG TTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036970XLOC_036970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058681-exon-scaffold_312-1491911889:120408..120861TCONS_00058681-exon-scaffold_312-1491911889:120408..120861Clytia hemisphaericaexon
TCONS_00058681-exon-scaffold_312-1510915933:120408..120861TCONS_00058681-exon-scaffold_312-1510915933:120408..120861Clytia hemisphaericaexon
TCONS_00058681-exon-scaffold_312-1575043694:120408..120861TCONS_00058681-exon-scaffold_312-1575043694:120408..120861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:120408..120861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.67555 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.868843 0.564839 1.47562 1.44367 0 0 1.67555 0.697169 0.122026 0.453447 0.146709 0 0 0 0 0 0 0 0 0.16108 0 0 0 0.150948 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450Sequence
Match NameE-valueIdentityDescription
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