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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058669 ID=TCONS_00058669|Name=TCONS_00058669|organism=Clytia hemisphaerica|type=transcript|length=2027bp TTTTGCATAATGGTAGGTTGAATTACGACGACAGAGAATTTAAAAAGACT GTTATAAATTTTTCGTATGGAAAGATTTGACCTTTAATGGGGAGTTTATA AACTTTTATTACGAAATCTAAACAATCTAATGTGAACCTTTTACTTTTAA CATTATCATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATA TAAAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAAT AATGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGAT TGACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAG TTTTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCT AATAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAA TGAGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGC TTAAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGA GAAGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTT TCTTGGAAACTGTCCTGATGAACCACAGAAGAAAActgcaaaaatcaaaa agATTACAAAGACTGAAACTCTGagtcaaaaaattaacaacaaaGGATCC AATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAG AAGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAgtg atgaaaacaaagaaaactctTCTATATCACCCATCAGTTTTAAGAAGCCC TCAAACATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATACATT GAAGATTGCAGCAGATAATGATCCCCGTAGACAgactttcaatatttcaa agaaAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGtcgaaaaaaatc aacAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAACCCA ACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAAAAAC CAACGTTGAAGAAAGGTCTTGCTATGAAAAGGTTGAAACTGAcaaaagaa gccaatcaaactATGCCAAGACATCCAATGCCTTTCGCTGCTAAGAATAT GTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGgATTCACGAACT GGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGATAAT TCTCAACCTCAGGATCGAAGAGaaactttCACTATTGATGCTCAAAAGAA ACAAGAAATAGCTCCTACACGAGAAGTCCTCTCTTTCCGCGCGTATTCTT TACGTCGCCGAATGGTCCAATTGAGACGCTCTGCGTGCAGGTGTTATCAA TCTGAAGATTTTCGGTTTGTGATTCACAAGATTGAAAAAGAGGTGGAGTG TGGTTTGATTTCTGTTAGAGGAGAAAAACACATCTTGGCTGACTTAGGTA TGTTCAGTTTCTAGtcttctacaatcagtgccataacatattgggccatt ccagaatttgtctgtaacaggggggcggacgacacaggatatCCGAGGGC AAaggttttcaccaaaattcgaaatttctaaggtgagagaagaaaatgta tgaatttccaaggcaattgaactaaaaaagacaaaatagagtggaatttc cgatgcattttgcaaaactacatagattttcatcggaatttccgaccacc aactggaaaagaaaaattatttccgaggctagaaaaaattaaaaaatgca cgtcgtccgacgggggtatacaaaaattttcttgaatggcccattggcac ttttggctaatttaccatttttcgaaaatcgaagttcgagcgagaatgtc aatttcaggccttcaacttgatttcatcgattatttcgatctgggaggga tttattggtttctaggctatatttcaa Run BLAST on NCBI transcript from alignment at scaffold_312:124449..131184- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058669 ID=TCONS_00058669|Name=TCONS_00058669|organism=Clytia hemisphaerica|type=transcript|length=6736bp|location=Sequence derived from alignment at scaffold_312:124449..131184- (Clytia hemisphaerica) TTTTGCATAATGGTAGGTTGAATTACGACGACAGAGAATTTAAAAAGACT
GTTATAAATTTTTCGTATGGAAAGATTTGACCTTTAATGGGGAGTTTATA
AACTTTTATTACGAAATCTAAACAATCTAATGTGAACCTTTTACTTTTAA
CATTATCATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATA
TAAAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAAT
AATGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGAT
TGACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAG
TTTTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCT
AATAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAA
TGAGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGC
TTAAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGA
GAAGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTT
TCTTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAA
AGGTATGTAATCTTTTTTCAGTTTTTGCTTCAGTTTGCAGAGTAACGACC
CACGGCCTGTTCGGACCATGCTTGGGCCACAAAAAAGTATTATTGAATCA
GACCGAACATTTTGTTCGGACCATGTTCGGGCCATGTATTTACAATTGAG
GAACATCATAGGAATAGTAGAATTTAATTTTATTCACCTTTCCTGGTTTA
TCATCATCCATTGTTAAATATTTTCATTAGACAAATTAAAAAGAAGACCA
TATACAGTGAGGCTGGAACTTCGATTTTTGAGGATTACGATTTTACCAGC
TTTTTAGCGATTTTTGCCTCGCTAACCTAAATCTCGCAACCTCTTTACCT
TGAAGGAAGATCGAAATTAGAGTTTTTCAGCGTTCCGAAAAAAACGCAAA
GCAAAAGATTTTTAATCTTCACAGGATCGATTCTCAACAACAAAATACAT
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
AATAAGCCAGGCGTAATTTACAGTAATACATTCGGGTATATTGATTGCCT
TATTTTTTAAACATGAAAACAGATGAAAACAATGTAAAAGCACTTTTTCG
CAATCTTACAAAATCTTAGAACAGTTTTAACTGTGTTGATCTAGTTTCTG
AAATATCTGGAAATATAAAAAGTATAAACCAGAGTAAATTAGCAAAACTA
AACATAAAATAAGAAACTAATATAAACTAAATATAACCAGTTGCAATAGA
ACCAAGTAAAATTCACTTTAAAAACGAGAATCTGTAACACTCTTAATCTA
AACTCCATTTGTTATACTTCATTGAGCTTTGTTGTGAGTGCCCACCCAGA
ATGTCTAAGAGAAGTTATTATCAGGTCAAAGCATGCAATCAAGCAACCTA
TTCTGGTAAATAGAAACAAAATAATATAATACGAAAATGGCTAAAAAAAC
AAGAAAGTTTCTAAACAGGTTTTTTTAATAAAGCTGAATAAAGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGG
CAGGGGACATCCTCGCACATCCTGATGTACTAGGCAAATATATATAGTAT
GAAAATAAAATGTTTTCTCCTGTCAGATCTACAAACGACAAAGAGTGGCC
GAATTCTTTTTCCTCTTAGAGAGACTATGTATATAGTTGTTTTGGAGACC
TATTGAATAACTAATTTATCACGTTTTTATTGGCTGAGAAAAGTAATATA
TGTGGAGTAATTTGTTATTCAATAGGCTGTCGCGTTCAAAGTGATCCAGA
GCCTCCTCGATTTGCAAGCTGTAAACAAAAAATTTAATGACAAACAAACG
CCATATTAAAGTAAGATGAAAACACTAAACAGATCTCAGGGGGATCTTGA
ATTTAATAAAGAGTTGTCGCAATAAACAGACTGTACCCTTATAATCATAA
AGGTTGGCGAGTCCAGTCAAAACACAGATTTGATCTGTAGCGTCATGCTT
CACATTTACAAAATGGAGAACATTTTGCTATAAACCAAGGAAAATGTGTG
AATTTTTTTGCATACTATCATGTGCANAAATGGAGAACATTTTGCTATAA
ACCAAGGAAAATGTGTGAATTTTTTTGCATACTATCATGTGCAAAAATAT
TGAAAAAAAGGAAGAAAAGAATTGTGCAGACCTTTTGCTATTCACAATGT
CATGTTGAATTAATAAAAAACTCAAGCAGTACCAGACCCGGGGGTCCTGG
TCGTAGGAAATGACTTCTACCAAAAATAACCACAAAAAAGTATTTTTATG
AGTATTTTTTTCCACACAAGTATAACACCAGTGTAGTAGCTGGGGGTCCT
GTATATATATTGTATTATTATAGAATTCAAATCCAGGTTTTGATGTTTCT
GGATCTGCAAAAGGTAAGTTTAAATTTACTTCTACTTTAATGTTAATTTT
AAGTCCAAGAAAATACCTTANAAAAATATTGAAAAAAAGGAAGAAAAGAA
TTGTGCAGACCTTTTGCTATTCACAATGTCATGTTGAATTAATAAAAAAC
TCAAGCAGTACCAATCCTGTATATTGTATTATTATAGAATTCAAATCCAG
GTTTTGATGTTTCTGGATCTGCAAAAGGTAAGTTTAAATTTGGGACACCT
TCTACTTTAATGTTAATTTATACTTTGTCTTTCAGATTACAAAGACTGAA
ACTCTGAGTCAAAAAATTAACAACAAAGGATCCAATGAAAACCGTAAAGC
ACTTACAGCAATACAGCCAGTCACACCTGCCAGAAGAACAACTTTTCTTG
TCAACAAACACCAAAGTCAACTCGCAGTTAGTGATGAAAACAAAGAAAAC
TCTTCTATATCACCCATCAGTTTTAAGAAGCCCTCAAACATCCCTAAGAG
NGAAGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAG
TGATGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTGAGAAGC
CCTCAAACATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATACA
TTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATTTC
AAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAAAA
TCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAACC
CAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAAAG
TAAGTCAGACCAACCGTTTATTTTCTTATCTATGAAAACTGCCAATCCTA
ACTCCAACCCCAAATAGTTTCTTCACCTTTTCTAGATACTGGGATATTTA
AGAAAACAGTCCAGCTTGCAGGACTTAGTGCCTTTTTCGAAACTGGATGC
TAGACAACAATAGCCATTTTGATTGTGGAATTAAAAATCATGAAATCATA
AAATATCCACATATAAAATGTTTTCATTCGAATTACAGAAAGATTCTTAA
CTATAGAAATAGAGAGAGTTTACTGTAATCCTAAGTAAGACTCCCAGCTG
ACACACAACATTGTTTCAACGTTCATCTAACGTTATAGAGACGTTGTGAA
TATTAGATTAACGTTGAAACAACGTTGGTGTCAGCTGGGCTGGGTATTGC
GATGTAAAATTTACATTCTTTCATAGAACCAACGTTGAAGAAAGGTCTTG
CTATGAAAAGGTTGAAACTGACAAAAGAAGCCAATCAAACTATGCCAAGA
CATCCAATGCCTTTCGCTGCNTAGAACCAACGTTGAAGAAAGGTCTTGCT
ATGAAAAGGTTGAAACTGACAAAAGAAGCCAATCAAACTATGCCAAGACA
TCCAATGCCTTTCGCTGCTAAGAATATGTTTTACGATGAACGCTGGATCG
AAAAACAAGAAAGAGGTTGGTGTCGTAAAAACAGATATTTGAACATTTTA
GTCATACCCATTACTTTATCCCGATTCATATCATATATTCAAATGCTCTG
AAAGTTTTTATTGAATCCTCTGGTATATTTCGTACCCAGACTGTCTGAAA
CCTGCTCCCGTCAAGGAGAAAAATTTGTCGGGATTTTTAAACTTAGATTG
GAAAGAATTTGCACTCTAAAGCTGGGTTACCCTGACTTAAATTTTACTTA
ATGAGACACTTAAAGCCCGACTGTATAATTTCTGATAAGATAATTCGAAA
AAAGATTTTTTTATAAACAATACAAATTTTTGTTTCAGGATTCACGAACT
GGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGATAAT
TCTCAACCTCAGGATCGAAGAGGTAAAACTTTGAACTATCAGCTCAATAA
ATATCTCTTAAATTTCATTACACACCTGTTTGAAAAAAATCTTTTATTTT
AAACCCCGCACAATGGTGTTAAATAAGTCTCCCGTTTTCGCTGCTCCGTA
TTTGAACGCATAGCTCAAAGCAAAGCAAATCGACTTTTAGTTTTAAGGTT
ATATGTAAATTTCCTTGGGTTTATTTTTTAGAAACTTTCACTATTGATGC
TCAAAAGAAACAAGAAATAGCTCCTACACGAGAAGTCCTCTCTTTCCGCG
CGTATTCTTTACGTCGCCGAATGGTCCAATTGAGACGCTCTGCGTGCAGG
TGTTATCAATCTGAAGATTTTCGGTTTGTGATTCACAAGATTGAAAAAGA
GGTGGAGTGTGGTTTGATTTCTGTTAGAGGAGAAAAACACATCTTGGCTG
ACTTAGGTATGTTCAGTTTCTAGTCTTCTACAATCAGTGCCATAACATAT
TGGGCCATTCCAGAATTTGTCTGTAACAGGGGGGCGGACGACACAGGATA
TCCGAGGGCAAAGGTTTTCACCAAAATTCGAAATTTCTAAGGTGAGAGAA
GAAAATGTATGAATTTCCAAGGCAATTGAACTAAAAAAGACAAAATAGAG
TGGAATTTCCGATGCATTTTGCAAAACTACATAGATTTTCATCGGAATTT
CCGACCACCAACTGGAAAAGAAAAATTATTTCCGAGGCTAGAAAAAATTA
AAAAATGCACGTCGTCCGACGGGGGTATACAAAAATTTTCTTGAATGGCC
CATTGGCACTTTTGGCTAATTTACCATTTTTCGAAAATCGAAGTTCGAGC
GAGAATGTCAATTTCAGGCCTTCAACTTGATTTCATCGATTATTTCGATC
TGGGAGGGATTTATTGGTTTCTAGGCTATATTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058669-exon-scaffold_312-1575043694:130533..131184 | TCONS_00058669-exon-scaffold_312-1575043694:130533..131184 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1575043694:126796..126999 | TCONS_00058669-exon-scaffold_312-1575043694:126796..126999 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1575043694:126436..126676 | TCONS_00058669-exon-scaffold_312-1575043694:126436..126676 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1575043694:125770..125910 | TCONS_00058669-exon-scaffold_312-1575043694:125770..125910 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1575043694:125363..125446 | TCONS_00058669-exon-scaffold_312-1575043694:125363..125446 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1575043694:124449..125153 | TCONS_00058669-exon-scaffold_312-1575043694:124449..125153 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1510915933:130533..131184 | TCONS_00058669-exon-scaffold_312-1510915933:130533..131184 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1510915933:126796..126999 | TCONS_00058669-exon-scaffold_312-1510915933:126796..126999 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1510915933:126436..126676 | TCONS_00058669-exon-scaffold_312-1510915933:126436..126676 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1510915933:125770..125910 | TCONS_00058669-exon-scaffold_312-1510915933:125770..125910 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1510915933:125363..125446 | TCONS_00058669-exon-scaffold_312-1510915933:125363..125446 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1510915933:124449..125153 | TCONS_00058669-exon-scaffold_312-1510915933:124449..125153 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1491911889:130533..131184 | TCONS_00058669-exon-scaffold_312-1491911889:130533..131184 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1491911889:126796..126999 | TCONS_00058669-exon-scaffold_312-1491911889:126796..126999 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1491911889:126436..126676 | TCONS_00058669-exon-scaffold_312-1491911889:126436..126676 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1491911889:125770..125910 | TCONS_00058669-exon-scaffold_312-1491911889:125770..125910 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1491911889:125363..125446 | TCONS_00058669-exon-scaffold_312-1491911889:125363..125446 | Clytia hemisphaerica | exon |
TCONS_00058669-exon-scaffold_312-1491911889:124449..125153 | TCONS_00058669-exon-scaffold_312-1491911889:124449..125153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_312 | supercontig | scaffold_312:124449..131184 - |
Blast
BLAST of TCONS_00058669 vs. Swiss-Prot (Human)
Match: ASPM (Abnormal spindle-like microcephaly-associated protein OS=Homo sapiens GN=ASPM PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 8.906e-31 Identity = 70/162 (43.21%), Postives = 98/162 (60.49%), Query Frame = 2
Query: 1070 RTSISQSLQKPTLKKGLAMKRLKLTKEANQTMPRHPMPFAAKNMFYDERWIEKQERGFTNWLNYLLTPFEENCPADNSQPQDRRETFTIDAQKKQEI--APTREVLSFRAYSLRRRMVQLRRSACRCYQSEDFRFVIHKIEKEVECGLISVRGEKHILADLG 1549
RT IS++ ++ +A L K +PRHPMPFAAKNMFYDERW EKQE+GFT WLN++LTP + + S+ I+ Q K + APT+E +S RAY+ R R+ +LRR+ACR + SE I K+E E+E + VR ++H+ D+G
Sbjct: 646 RTPISKTNKRTKPIIAVAQSSLTFIKPLKTDIPRHPMPFAAKNMFYDERWKEKQEQGFTWWLNFILTPDDFTVKTNISEVNAATLLLGIENQHKISVPRAPTKEEMSLRAYTARCRLNRLRRAACRLFTSEKMVKAIKKLEIEIEARRLIVRKDRHLWKDVG 807
The following BLAST results are available for this feature:
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