TCONS_00058670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058670
Unique NameTCONS_00058670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1970

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058670 ID=TCONS_00058670|Name=TCONS_00058670|organism=Clytia hemisphaerica|type=transcript|length=1970bp
TTTTGCATAATGGTAGGTTGAATTACGACGACAGAGAATTTAAAAAGACT
GTTATAAATTTTTCGTATGGAAAGATTTGACCTTTAATGGGGAGTTTATA
AACTTTTATTACGAAATCTAAACAATCTAATGTGAACCTTTTACTTTTAA
CATTATCATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATA
TAAAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAAT
AATGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGAT
TGACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAG
TTTTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCT
AATAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAA
TGAGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGC
TTAAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGA
GAAGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTT
TCTTGGAAACTGTCCTGATGAACCACAGAAGAAAActgcaaaaatcaaaa
agATTACAAAGACTGAAACTCTGagtcaaaaaattaacaacaaaGGATCC
AATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAG
AAGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAgtg
atgaaaacaaagaaaactctTCTATATCACCCATCAGTTTTAAGAAGCCC
TCAAACATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATACATT
GAAGATTGCAGCAGATAATGATCCCCGTAGACAgactttcaatatttcaa
agaaAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGtcgaaaaaaatc
aacAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAACCCA
ACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAAAAAC
CAACGTTGAAGAAAGATCCAATGCCTTTCGCTGCTAAGAATATGTTTTAC
GATGAACGCTGGATCGAAAAACAAGAAAGAGgATTCACGAACTGGTTGAA
TTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGATAATTCTCAAC
CTCAGGATCGAAGAGaaactttCACTATTGATGCTCAAAAGAAACAAGAA
ATAGCTCCTACACGAGAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCG
CCGAATGGTCCAATTGAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAG
ATTTTCGGTTTGTGATTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTG
ATTTCTGTTAGAGGAGAAAAACACATCTTGGCTGACTTAGGTATGTTCAG
TTTCTAGtcttctacaatcagtgccataacatattgggccattccagaat
ttgtctgtaacaggggggcggacgacacaggatatCCGAGGGCAAaggtt
ttcaccaaaattcgaaatttctaaggtgagagaagaaaatgtatgaattt
ccaaggcaattgaactaaaaaagacaaaatagagtggaatttccgatgca
ttttgcaaaactacatagattttcatcggaatttccgaccaccaactgga
aaagaaaaattatttccgaggctagaaaaaattaaaaaatgcacgtcgtc
cgacgggggtatacaaaaattttcttgaatggcccattggcacttttggc
taatttaccatttttcgaaaatcgaagttcgagcgagaatgtcaatttca
ggccttcaacttgatttcatcgattatttcgatctgggagggatttattg
gtttctaggctatatttcaa
Run BLAST on NCBI

protein sequence of TCONS_00058670-protein

>TCONS_00058670-protein ID=TCONS_00058670-protein|Name=TCONS_00058670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp
MALDEWSLGSLNFNIKTIERDFLTKDDDGENNELVCLRVARFSKVPKIDF
RKVRIGKKKTIKFEVFNPNNFSTSIQFKQFSNNDFYLEIANSSPSRQNEP
ASEEGIPLLLEPDQLKYVFVTWTPSSSGNMREVLTVQWDGGSKLQVIFLG
NCPDEPQKKTAKIKKITKTETLSQKINNKGSNENRKALTAIQPVTPARRT
TFLVNKHQSQLAVSDENKENSSISPISFKKPSNIPKKAQNSSRNRNTLKI
AADNDPRRQTFNISKKEDASRNLFGTSSKKINKKPSAKPPTEPPNPTQPK
PFLKRTSISQSLQKPTLKKDPMPFAAKNMFYDERWIEKQERGFTNWLNYL
LTPFEENCPADNSQPQDRRETFTIDAQKKQEIAPTREVLSFRAYSLRRRM
VQLRRSACRCYQSEDFRFVIHKIEKEVECGLISVRGEKHILADLGMFSF
Run BLAST on NCBI

transcript from alignment at scaffold_312:124449..131184-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058670 ID=TCONS_00058670|Name=TCONS_00058670|organism=Clytia hemisphaerica|type=transcript|length=6736bp|location=Sequence derived from alignment at scaffold_312:124449..131184- (Clytia hemisphaerica)
TTTTGCATAATGGTAGGTTGAATTACGACGACAGAGAATTTAAAAAGACT
GTTATAAATTTTTCGTATGGAAAGATTTGACCTTTAATGGGGAGTTTATA
AACTTTTATTACGAAATCTAAACAATCTAATGTGAACCTTTTACTTTTAA
CATTATCATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATA
TAAAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAAT
AATGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGAT
TGACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAG
TTTTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCT
AATAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAA
TGAGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGC
TTAAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGA
GAAGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTT
TCTTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAA
AGGTATGTAATCTTTTTTCAGTTTTTGCTTCAGTTTGCAGAGTAACGACC
CACGGCCTGTTCGGACCATGCTTGGGCCACAAAAAAGTATTATTGAATCA
GACCGAACATTTTGTTCGGACCATGTTCGGGCCATGTATTTACAATTGAG
GAACATCATAGGAATAGTAGAATTTAATTTTATTCACCTTTCCTGGTTTA
TCATCATCCATTGTTAAATATTTTCATTAGACAAATTAAAAAGAAGACCA
TATACAGTGAGGCTGGAACTTCGATTTTTGAGGATTACGATTTTACCAGC
TTTTTAGCGATTTTTGCCTCGCTAACCTAAATCTCGCAACCTCTTTACCT
TGAAGGAAGATCGAAATTAGAGTTTTTCAGCGTTCCGAAAAAAACGCAAA
GCAAAAGATTTTTAATCTTCACAGGATCGATTCTCAACAACAAAATACAT
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
AATAAGCCAGGCGTAATTTACAGTAATACATTCGGGTATATTGATTGCCT
TATTTTTTAAACATGAAAACAGATGAAAACAATGTAAAAGCACTTTTTCG
CAATCTTACAAAATCTTAGAACAGTTTTAACTGTGTTGATCTAGTTTCTG
AAATATCTGGAAATATAAAAAGTATAAACCAGAGTAAATTAGCAAAACTA
AACATAAAATAAGAAACTAATATAAACTAAATATAACCAGTTGCAATAGA
ACCAAGTAAAATTCACTTTAAAAACGAGAATCTGTAACACTCTTAATCTA
AACTCCATTTGTTATACTTCATTGAGCTTTGTTGTGAGTGCCCACCCAGA
ATGTCTAAGAGAAGTTATTATCAGGTCAAAGCATGCAATCAAGCAACCTA
TTCTGGTAAATAGAAACAAAATAATATAATACGAAAATGGCTAAAAAAAC
AAGAAAGTTTCTAAACAGGTTTTTTTAATAAAGCTGAATAAAGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGG
CAGGGGACATCCTCGCACATCCTGATGTACTAGGCAAATATATATAGTAT
GAAAATAAAATGTTTTCTCCTGTCAGATCTACAAACGACAAAGAGTGGCC
GAATTCTTTTTCCTCTTAGAGAGACTATGTATATAGTTGTTTTGGAGACC
TATTGAATAACTAATTTATCACGTTTTTATTGGCTGAGAAAAGTAATATA
TGTGGAGTAATTTGTTATTCAATAGGCTGTCGCGTTCAAAGTGATCCAGA
GCCTCCTCGATTTGCAAGCTGTAAACAAAAAATTTAATGACAAACAAACG
CCATATTAAAGTAAGATGAAAACACTAAACAGATCTCAGGGGGATCTTGA
ATTTAATAAAGAGTTGTCGCAATAAACAGACTGTACCCTTATAATCATAA
AGGTTGGCGAGTCCAGTCAAAACACAGATTTGATCTGTAGCGTCATGCTT
CACATTTACAAAATGGAGAACATTTTGCTATAAACCAAGGAAAATGTGTG
AATTTTTTTGCATACTATCATGTGCANAAATGGAGAACATTTTGCTATAA
ACCAAGGAAAATGTGTGAATTTTTTTGCATACTATCATGTGCAAAAATAT
TGAAAAAAAGGAAGAAAAGAATTGTGCAGACCTTTTGCTATTCACAATGT
CATGTTGAATTAATAAAAAACTCAAGCAGTACCAGACCCGGGGGTCCTGG
TCGTAGGAAATGACTTCTACCAAAAATAACCACAAAAAAGTATTTTTATG
AGTATTTTTTTCCACACAAGTATAACACCAGTGTAGTAGCTGGGGGTCCT
GTATATATATTGTATTATTATAGAATTCAAATCCAGGTTTTGATGTTTCT
GGATCTGCAAAAGGTAAGTTTAAATTTACTTCTACTTTAATGTTAATTTT
AAGTCCAAGAAAATACCTTANAAAAATATTGAAAAAAAGGAAGAAAAGAA
TTGTGCAGACCTTTTGCTATTCACAATGTCATGTTGAATTAATAAAAAAC
TCAAGCAGTACCAATCCTGTATATTGTATTATTATAGAATTCAAATCCAG
GTTTTGATGTTTCTGGATCTGCAAAAGGTAAGTTTAAATTTGGGACACCT
TCTACTTTAATGTTAATTTATACTTTGTCTTTCAGATTACAAAGACTGAA
ACTCTGAGTCAAAAAATTAACAACAAAGGATCCAATGAAAACCGTAAAGC
ACTTACAGCAATACAGCCAGTCACACCTGCCAGAAGAACAACTTTTCTTG
TCAACAAACACCAAAGTCAACTCGCAGTTAGTGATGAAAACAAAGAAAAC
TCTTCTATATCACCCATCAGTTTTAAGAAGCCCTCAAACATCCCTAAGAG
NGAAGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAG
TGATGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTGAGAAGC
CCTCAAACATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATACA
TTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATTTC
AAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAAAA
TCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAACC
CAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAAAG
TAAGTCAGACCAACCGTTTATTTTCTTATCTATGAAAACTGCCAATCCTA
ACTCCAACCCCAAATAGTTTCTTCACCTTTTCTAGATACTGGGATATTTA
AGAAAACAGTCCAGCTTGCAGGACTTAGTGCCTTTTTCGAAACTGGATGC
TAGACAACAATAGCCATTTTGATTGTGGAATTAAAAATCATGAAATCATA
AAATATCCACATATAAAATGTTTTCATTCGAATTACAGAAAGATTCTTAA
CTATAGAAATAGAGAGAGTTTACTGTAATCCTAAGTAAGACTCCCAGCTG
ACACACAACATTGTTTCAACGTTCATCTAACGTTATAGAGACGTTGTGAA
TATTAGATTAACGTTGAAACAACGTTGGTGTCAGCTGGGCTGGGTATTGC
GATGTAAAATTTACATTCTTTCATAGAACCAACGTTGAAGAAAGGTCTTG
CTATGAAAAGGTTGAAACTGACAAAAGAAGCCAATCAAACTATGCCAAGA
CATCCAATGCCTTTCGCTGCNTAGAACCAACGTTGAAGAAAGGTCTTGCT
ATGAAAAGGTTGAAACTGACAAAAGAAGCCAATCAAACTATGCCAAGACA
TCCAATGCCTTTCGCTGCTAAGAATATGTTTTACGATGAACGCTGGATCG
AAAAACAAGAAAGAGGTTGGTGTCGTAAAAACAGATATTTGAACATTTTA
GTCATACCCATTACTTTATCCCGATTCATATCATATATTCAAATGCTCTG
AAAGTTTTTATTGAATCCTCTGGTATATTTCGTACCCAGACTGTCTGAAA
CCTGCTCCCGTCAAGGAGAAAAATTTGTCGGGATTTTTAAACTTAGATTG
GAAAGAATTTGCACTCTAAAGCTGGGTTACCCTGACTTAAATTTTACTTA
ATGAGACACTTAAAGCCCGACTGTATAATTTCTGATAAGATAATTCGAAA
AAAGATTTTTTTATAAACAATACAAATTTTTGTTTCAGGATTCACGAACT
GGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGATAAT
TCTCAACCTCAGGATCGAAGAGGTAAAACTTTGAACTATCAGCTCAATAA
ATATCTCTTAAATTTCATTACACACCTGTTTGAAAAAAATCTTTTATTTT
AAACCCCGCACAATGGTGTTAAATAAGTCTCCCGTTTTCGCTGCTCCGTA
TTTGAACGCATAGCTCAAAGCAAAGCAAATCGACTTTTAGTTTTAAGGTT
ATATGTAAATTTCCTTGGGTTTATTTTTTAGAAACTTTCACTATTGATGC
TCAAAAGAAACAAGAAATAGCTCCTACACGAGAAGTCCTCTCTTTCCGCG
CGTATTCTTTACGTCGCCGAATGGTCCAATTGAGACGCTCTGCGTGCAGG
TGTTATCAATCTGAAGATTTTCGGTTTGTGATTCACAAGATTGAAAAAGA
GGTGGAGTGTGGTTTGATTTCTGTTAGAGGAGAAAAACACATCTTGGCTG
ACTTAGGTATGTTCAGTTTCTAGTCTTCTACAATCAGTGCCATAACATAT
TGGGCCATTCCAGAATTTGTCTGTAACAGGGGGGCGGACGACACAGGATA
TCCGAGGGCAAAGGTTTTCACCAAAATTCGAAATTTCTAAGGTGAGAGAA
GAAAATGTATGAATTTCCAAGGCAATTGAACTAAAAAAGACAAAATAGAG
TGGAATTTCCGATGCATTTTGCAAAACTACATAGATTTTCATCGGAATTT
CCGACCACCAACTGGAAAAGAAAAATTATTTCCGAGGCTAGAAAAAATTA
AAAAATGCACGTCGTCCGACGGGGGTATACAAAAATTTTCTTGAATGGCC
CATTGGCACTTTTGGCTAATTTACCATTTTTCGAAAATCGAAGTTCGAGC
GAGAATGTCAATTTCAGGCCTTCAACTTGATTTCATCGATTATTTCGATC
TGGGAGGGATTTATTGGTTTCTAGGCTATATTTCAA

Coding sequence (CDS) from alignment at scaffold_312:124449..131184-

>TCONS_00058670 ID=TCONS_00058670|Name=TCONS_00058670|organism=Clytia hemisphaerica|type=CDS|length=9450bp|location=Sequence derived from alignment at scaffold_312:124449..131184- (Clytia hemisphaerica)
AAACTTTCACTATTGATGCTCAAAAGAAACAAGAAATAGCTCCTACACGA
GAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCGCCGAATGGTCCAATT
GAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAGATTTTCGGTTTGTGA
TTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTGATTTCTGTTAGAGGA
GAAAAACACATCTTGGCTGACTTAGGTATGTTCAGTTTCTAGGATTCACG
AACTGGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGA
TAATTCTCAACCTCAGGATCGAAGAGATCCAATGCCTTTCGCTGCTAAGA
ATATGTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGAACCAACG
TTGAAGAAAGATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATA
CATTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATT
TCAAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAA
AATCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAA
CCCAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAA
AATTACAAAGACTGAAACTCTGAGTCAAAAAATTAACAACAAAGGATCCA
ATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAGA
AGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAGTGA
TGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTAAGAAGCCCT
CAAACATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATATA
AAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAATAA
TGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGATTG
ACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAGTT
TTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCTAA
TAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAATG
AGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGCTT
AAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGAGA
AGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTTTC
TTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAAAG
AAACTTTCACTATTGATGCTCAAAAGAAACAAGAAATAGCTCCTACACGA
GAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCGCCGAATGGTCCAATT
GAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAGATTTTCGGTTTGTGA
TTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTGATTTCTGTTAGAGGA
GAAAAACACATCTTGGCTGACTTAGGTATGTTCAGTTTCTAGGATTCACG
AACTGGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGA
TAATTCTCAACCTCAGGATCGAAGAGATCCAATGCCTTTCGCTGCTAAGA
ATATGTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGAACCAACG
TTGAAGAAAGATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATA
CATTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATT
TCAAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAA
AATCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAA
CCCAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAA
AATTACAAAGACTGAAACTCTGAGTCAAAAAATTAACAACAAAGGATCCA
ATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAGA
AGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAGTGA
TGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTAAGAAGCCCT
CAAACATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATATA
AAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAATAA
TGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGATTG
ACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAGTT
TTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCTAA
TAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAATG
AGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGCTT
AAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGAGA
AGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTTTC
TTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAAAG
AAACTTTCACTATTGATGCTCAAAAGAAACAAGAAATAGCTCCTACACGA
GAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCGCCGAATGGTCCAATT
GAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAGATTTTCGGTTTGTGA
TTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTGATTTCTGTTAGAGGA
GAAAAACACATCTTGGCTGACTTAGGTATGTTCAGTTTCTAGGATTCACG
AACTGGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGA
TAATTCTCAACCTCAGGATCGAAGAGATCCAATGCCTTTCGCTGCTAAGA
ATATGTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGAACCAACG
TTGAAGAAAGATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATA
CATTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATT
TCAAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAA
AATCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAA
CCCAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAA
AATTACAAAGACTGAAACTCTGAGTCAAAAAATTAACAACAAAGGATCCA
ATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAGA
AGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAGTGA
TGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTAAGAAGCCCT
CAAACATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATATA
AAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAATAA
TGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGATTG
ACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAGTT
TTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCTAA
TAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAATG
AGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGCTT
AAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGAGA
AGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTTTC
TTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAAAG
AAACTTTCACTATTGATGCTCAAAAGAAACAAGAAATAGCTCCTACACGA
GAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCGCCGAATGGTCCAATT
GAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAGATTTTCGGTTTGTGA
TTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTGATTTCTGTTAGAGGA
GAAAAACACATCTTGGCTGACTTAGGTATGTTCAGTTTCTAGGATTCACG
AACTGGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGA
TAATTCTCAACCTCAGGATCGAAGAGATCCAATGCCTTTCGCTGCTAAGA
ATATGTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGAACCAACG
TTGAAGAAAGATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATA
CATTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATT
TCAAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAA
AATCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAA
CCCAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAA
AATTACAAAGACTGAAACTCTGAGTCAAAAAATTAACAACAAAGGATCCA
ATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAGA
AGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAGTGA
TGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTAAGAAGCCCT
CAAACATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATATA
AAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAATAA
TGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGATTG
ACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAGTT
TTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCTAA
TAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAATG
AGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGCTT
AAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGAGA
AGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTTTC
TTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAAAG
AAACTTTCACTATTGATGCTCAAAAGAAACAAGAAATAGCTCCTACACGA
GAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCGCCGAATGGTCCAATT
GAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAGATTTTCGGTTTGTGA
TTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTGATTTCTGTTAGAGGA
GAAAAACACATCTTGGCTGACTTAGGTATGTTCAGTTTCTAGGATTCACG
AACTGGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGA
TAATTCTCAACCTCAGGATCGAAGAGATCCAATGCCTTTCGCTGCTAAGA
ATATGTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGAACCAACG
TTGAAGAAAGATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATA
CATTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATT
TCAAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAA
AATCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAA
CCCAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAA
AATTACAAAGACTGAAACTCTGAGTCAAAAAATTAACAACAAAGGATCCA
ATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAGA
AGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAGTGA
TGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTAAGAAGCCCT
CAAACATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATATA
AAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAATAA
TGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGATTG
ACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAGTT
TTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCTAA
TAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAATG
AGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGCTT
AAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGAGA
AGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTTTC
TTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAAAG
AAACTTTCACTATTGATGCTCAAAAGAAACAAGAAATAGCTCCTACACGA
GAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCGCCGAATGGTCCAATT
GAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAGATTTTCGGTTTGTGA
TTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTGATTTCTGTTAGAGGA
GAAAAACACATCTTGGCTGACTTAGGTATGTTCAGTTTCTAGGATTCACG
AACTGGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGA
TAATTCTCAACCTCAGGATCGAAGAGATCCAATGCCTTTCGCTGCTAAGA
ATATGTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGAACCAACG
TTGAAGAAAGATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATA
CATTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATT
TCAAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAA
AATCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAA
CCCAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAA
AATTACAAAGACTGAAACTCTGAGTCAAAAAATTAACAACAAAGGATCCA
ATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAGA
AGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAGTGA
TGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTAAGAAGCCCT
CAAACATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATATA
AAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAATAA
TGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGATTG
ACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAGTT
TTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCTAA
TAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAATG
AGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGCTT
AAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGAGA
AGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTTTC
TTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAAAG
AAACTTTCACTATTGATGCTCAAAAGAAACAAGAAATAGCTCCTACACGA
GAAGTCCTCTCTTTCCGCGCGTATTCTTTACGTCGCCGAATGGTCCAATT
GAGACGCTCTGCGTGCAGGTGTTATCAATCTGAAGATTTTCGGTTTGTGA
TTCACAAGATTGAAAAAGAGGTGGAGTGTGGTTTGATTTCTGTTAGAGGA
GAAAAACACATCTTGGCTGACTTAGGTATGTTCAGTTTCTAGGATTCACG
AACTGGTTGAATTATTTGTTGACACCATTTGAAGAGAATTGTCCTGCTGA
TAATTCTCAACCTCAGGATCGAAGAGATCCAATGCCTTTCGCTGCTAAGA
ATATGTTTTACGATGAACGCTGGATCGAAAAACAAGAAAGAGAACCAACG
TTGAAGAAAGATCCCTAAGAAAGCACAAAACAGTTCAAGAAATAGAAATA
CATTGAAGATTGCAGCAGATAATGATCCCCGTAGACAGACTTTCAATATT
TCAAAGAAAGAAGATGCTTCACGTAATCTCTTTGGAACTTCGTCGAAAAA
AATCAACAAGAAACCTTCAGCTAAACCCCCAACTGAACCACCAAACCCAA
CCCAACCAAAACCCTTCTTAAAAAGAACTTCCATATCTCAAAGTTTGCAA
AATTACAAAGACTGAAACTCTGAGTCAAAAAATTAACAACAAAGGATCCA
ATGAAAACCGTAAAGCACTTACAGCAATACAGCCAGTCACACCTGCCAGA
AGAACAACTTTTCTTGTCAACAAACACCAAAGTCAACTCGCAGTTAGTGA
TGAAAACAAAGAAAACTCTTCTATATCACCCATCAGTTTTAAGAAGCCCT
CAAACATGGCACTTGACGAATGGAGTTTGGGTTCACTGAATTTCAATATA
AAGACTATTGAACGTGATTTTTTAACCAAAGATGATGATGGCGAAAATAA
TGAGCTAGTTTGTTTGCGTGTTGCAAGGTTTAGCAAAGTTCCAAAGATTG
ACTTTCGAAAGGTCCGCATTGGTAAGAAGAAGACCATCAAGTTTGAAGTT
TTCAACCCAAACAACTTTTCTACATCGATTCAGTTCAAACAATTTTCTAA
TAATGATTTTTATCTCGAGATTGCAAACTCAAGCCCATCCCGGCAAAATG
AGCCAGCGAGTGAAGAGGGAATTCCACTTCTCCTTGAACCTGATCAGCTT
AAATATGTATTTGTTACCTGGACTCCCTCAAGCAGTGGGAACATGCGAGA
AGTTTTGACAGTACAATGGGATGGAGGATCAAAATTGCAAGTTATTTTTC
TTGGAAACTGTCCTGATGAACCACAGAAGAAAACTGCAAAAATCAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036959XLOC_036959Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058670-proteinTCONS_00058670-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058670-exon-scaffold_312-1575043694:130533..131184TCONS_00058670-exon-scaffold_312-1575043694:130533..131184Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1575043694:126796..126999TCONS_00058670-exon-scaffold_312-1575043694:126796..126999Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1575043694:126436..126676TCONS_00058670-exon-scaffold_312-1575043694:126436..126676Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1575043694:125991..126008TCONS_00058670-exon-scaffold_312-1575043694:125991..126008Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1575043694:125770..125835TCONS_00058670-exon-scaffold_312-1575043694:125770..125835Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1575043694:125363..125446TCONS_00058670-exon-scaffold_312-1575043694:125363..125446Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1575043694:124449..125153TCONS_00058670-exon-scaffold_312-1575043694:124449..125153Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1510915933:130533..131184TCONS_00058670-exon-scaffold_312-1510915933:130533..131184Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1510915933:126796..126999TCONS_00058670-exon-scaffold_312-1510915933:126796..126999Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1510915933:126436..126676TCONS_00058670-exon-scaffold_312-1510915933:126436..126676Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1510915933:125991..126008TCONS_00058670-exon-scaffold_312-1510915933:125991..126008Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1510915933:125770..125835TCONS_00058670-exon-scaffold_312-1510915933:125770..125835Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1510915933:125363..125446TCONS_00058670-exon-scaffold_312-1510915933:125363..125446Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1510915933:124449..125153TCONS_00058670-exon-scaffold_312-1510915933:124449..125153Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1491911889:130533..131184TCONS_00058670-exon-scaffold_312-1491911889:130533..131184Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1491911889:126796..126999TCONS_00058670-exon-scaffold_312-1491911889:126796..126999Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1491911889:126436..126676TCONS_00058670-exon-scaffold_312-1491911889:126436..126676Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1491911889:125991..126008TCONS_00058670-exon-scaffold_312-1491911889:125991..126008Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1491911889:125770..125835TCONS_00058670-exon-scaffold_312-1491911889:125770..125835Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1491911889:125363..125446TCONS_00058670-exon-scaffold_312-1491911889:125363..125446Clytia hemisphaericaexon
TCONS_00058670-exon-scaffold_312-1491911889:124449..125153TCONS_00058670-exon-scaffold_312-1491911889:124449..125153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:124449..131184 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.156323	0.338484	0	0	0	0	0.632545	0	0	0	0	0	0	0	0.787035	0.820068	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR031549ASH
IPR001715CH-domain
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00058670 vs. Swiss-Prot (Human)
Match: ASPM (Abnormal spindle-like microcephaly-associated protein OS=Homo sapiens GN=ASPM PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.533e-27
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = 2 
Query: 1097 KPTLKKDPMPFAAKNMFYDERWIEKQERGFTNWLNYLLTPFEENCPADNSQPQDRRETFTIDAQKKQEI--APTREVLSFRAYSLRRRMVQLRRSACRCYQSEDFRFVIHKIEKEVECGLISVRGEKHILADLG 1492
            K  + + PMPFAAKNMFYDERW EKQE+GFT WLN++LTP +     + S+         I+ Q K  +  APT+E +S RAY+ R R+ +LRR+ACR + SE     I K+E E+E   + VR ++H+  D+G
Sbjct:  674 KTDIPRHPMPFAAKNMFYDERWKEKQEQGFTWWLNFILTPDDFTVKTNISEVNAATLLLGIENQHKISVPRAPTKEEMSLRAYTARCRLNRLRRAACRLFTSEKMVKAIKKLEIEIEARRLIVRKDRHLWKDVG 807
The following BLAST results are available for this feature:
BLAST of TCONS_00058670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASPM2.533e-2745.52Abnormal spindle-like microcephaly-associated prot... [more]
back to top