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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058666 ID=TCONS_00058666|Name=TCONS_00058666|organism=Clytia hemisphaerica|type=transcript|length=760bp
CTCTCATGTATCCGGCTATAATGGCATTGCCGGATGCAAGAGATTCTGAA
ATcggttttacatttttcaaaatggggACTTCCTTGTCTTTGGAGTTGCA
TAAAAAGGCGACATTTTTTATTGGAAAATCATTCAACTTGTTCAAGCAAG
CAAGCCAATCAGCAGAATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCAC
TTTGTGCCTATGCAGTACATTGTACCGAAGAGAGCCAACAAGAAAATGCT
CTCGAAGATCAGAAACAacaagatgaagaagaagaccAATCACAAgacat
gatgacgtcatcacaagaTGATCAAGATGTTATGGAGCAAGATGAAAGCC
CATTGGACAAAGTCAAAGATGAAGAAGTACAGGTTACAGCAGACCAGAAC
GACCCGCAACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAG
CCAACGACGAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAA
GACGAAACGGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGA
TACCCATACGGCAGTTACCCTTAGGGTGGTTACCCTTACGGCGAATATCC
TTATGGCGAATATCCTCACAACTAGCGCTACGGAAAATAATTCATTTCAC
ACACGAAAatgataatttatttttattgggAATGGTGTTTGATGCCTGAT
TTTTTGTAATATTAggaaaaaatttttatcttGGTAACTCGTaagaaata
tcattttttc Run BLAST on NCBI protein sequence of TCONS_00058666-protein >TCONS_00058666-protein ID=TCONS_00058666-protein|Name=TCONS_00058666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MKIWKALLLLALCAYAVHCTEESQQENALEDQKQQDEEEDQSQDMMTSSQ
DDQDVMEQDESPLDKVKDEEVQVTADQNDPQPRKRRRRRQRRRRSQRRRS
QRSRRRQHGSRRRNGSRRRHGFRRRHSGYPYGSYP Run BLAST on NCBI transcript from alignment at scaffold_312:203131..204489+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058666 ID=TCONS_00058666|Name=TCONS_00058666|organism=Clytia hemisphaerica|type=transcript|length=1359bp|location=Sequence derived from alignment at scaffold_312:203131..204489+ (Clytia hemisphaerica)
CTCTCATGTATCCGGCTATAATGGCATTGCCGGATGCAAGAGATTCTGAA
ATcggttttacatttttcaaaatggggACTTCCTTGTCTTTGGAGTTGCA
TAAAAAGGCGACATTTTTTATTGGAAAATCATTCAACTTGTTCAAGCAAG
CAAGCCAATCAGCAGAATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCAC
TTTGTGCCTATGCAGTACATTGtaagtttttcaatttcttccACTTTATA
TCCAAAAAGAATCTTGTTGTTGTCAGGCTAGTACTTTAGAGATTTCACTA
TTTCAAGAATTATGGAATGAATATTATTAAAGCATTTCTTGTACAAAAAA
ATGTCCACATTTGAAGGATACCAAAATTATGTTTATCGTAAATAAATTTC
AGGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAGATCAGAAACAac
aagatgaagaagaagaccAATCACAAgacatgatgacgtcatcacaagaT
GATCAAGATGTTATGGAGCAAGATGAAAGCCCATTGGACAAAGTCAAAGA
TGAAGAAGTACAGGTTACAGGTATGTTGCAAATACTACCATccatttgtt
tgtttgttggaGTTTTTTAATCAGTTTCTTGTTAAAgtggttcttatttt
ttgttcacttgaATCCTTTAGTCTAGGCCTTAAATTTCGGTTTAGTGGTC
AGCTTAGCCTTATCcatttcttaaaatctaatctAAAATCTAATCCTCTA
GTAGTTACTATGCTACGGTCTAAATTAGGCATCATGTAAGTTTATTTTCA
AGACTTTAAAGTGGCGATTCAAATGTTAGCCTTGAAGTTATCGATTCTTC
TCTAGGTTATCTTTAAAAATGATTCCCATACCAGTTTGATGCTTGACCCT
AGTTTTGTTATTCATAAGAAACTTTAATATGATAGATAATTGTGAGTAAT
CCGACCAAACGATATTTGTTTAAATTCTTTCAATACAGCAGACCAGAACG
ACCCGCAACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAGC
CAACGACGAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAAG
ACGAAACGGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGAT
ACCCATACGGCAGTTACCCTTAGGGTGGTTACCCTTACGGCGAATATCCT
TATGGCGAATATCCTCACAACTAGCGCTACGGAAAATAATTCATTTCACA
CACGAAAatgataatttatttttattgggAATGGTGTTTGATGCCTGATT
TTTTGTAATATTAggaaaaaatttttatcttGGTAACTCGTaagaaatat
cattttttc Coding sequence (CDS) from alignment at scaffold_312:203131..204489+ >TCONS_00058666 ID=TCONS_00058666|Name=TCONS_00058666|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_312:203131..204489+ (Clytia hemisphaerica)
ATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCACTTTGTGCCTATGCAGT
ACATTGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAGATCAGAAAC
AacaagatgaagaagaagaccAATCACAAgacatgatgacgtcatcacaa
gaTGATCAAGATGTTATGGAGCAAGATGAAAGCCCATTGGACAAAGTCAA
AGATGAAGAAGTACAGGTTACAGCAGACCAGAACGACCCGCAACCAAGAA
AAAGACGTCGACGACGCCAACGAAGACGTCGAAGCCAACGACGAAGAAGT
CAACGAAGCCGACGAAGACAACACGGTTCTCGAAGACGAAACGGTTCCCG
AAGACGACATGGTTTCCGAAGACGACACAGTGGATACCCATACGGCAGTT
ACCCTTAGATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCACTTTGTGCC
TATGCAGTACATTGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAGA
TCAGAAACAacaagatgaagaagaagaccAATCACAAgacatgatgacgt
catcacaagaTGATCAAGATGTTATGGAGCAAGATGAAAGCCCATTGGAC
AAAGTCAAAGATGAAGAAGTACAGGTTACAGCAGACCAGAACGACCCGCA
ACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAGCCAACGAC
GAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAAGACGAAAC
GGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGATACCCATA
CGGCAGTTACCCTTAGATGAAGATTTGGAAAGCTTTGCTGCTTCTGGCAC
TTTGTGCCTATGCAGTACATTGTACCGAAGAGAGCCAACAAGAAAATGCT
CTCGAAGATCAGAAACAacaagatgaagaagaagaccAATCACAAgacat
gatgacgtcatcacaagaTGATCAAGATGTTATGGAGCAAGATGAAAGCC
CATTGGACAAAGTCAAAGATGAAGAAGTACAGGTTACAGCAGACCAGAAC
GACCCGCAACCAAGAAAAAGACGTCGACGACGCCAACGAAGACGTCGAAG
CCAACGACGAAGAAGTCAACGAAGCCGACGAAGACAACACGGTTCTCGAA
GACGAAACGGTTCCCGAAGACGACATGGTTTCCGAAGACGACACAGTGGA
TACCCATACGGCAGTTACCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058666-exon-scaffold_312-1491911889:203131..203351 | TCONS_00058666-exon-scaffold_312-1491911889:203131..203351 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1510915933:203131..203351 | TCONS_00058666-exon-scaffold_312-1510915933:203131..203351 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1575043694:203131..203351 | TCONS_00058666-exon-scaffold_312-1575043694:203131..203351 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1491911889:203533..203700 | TCONS_00058666-exon-scaffold_312-1491911889:203533..203700 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1510915933:203533..203700 | TCONS_00058666-exon-scaffold_312-1510915933:203533..203700 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1575043694:203533..203700 | TCONS_00058666-exon-scaffold_312-1575043694:203533..203700 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1491911889:204119..204489 | TCONS_00058666-exon-scaffold_312-1491911889:204119..204489 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1510915933:204119..204489 | TCONS_00058666-exon-scaffold_312-1510915933:204119..204489 | Clytia hemisphaerica | exon |
| TCONS_00058666-exon-scaffold_312-1575043694:204119..204489 | TCONS_00058666-exon-scaffold_312-1575043694:204119..204489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_312 | supercontig | scaffold_312:203131..204489 + |
Blast
The following BLAST results are available for this feature:
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