|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058783 ID=TCONS_00058783|Name=TCONS_00058783|organism=Clytia hemisphaerica|type=transcript|length=800bp
ATcgagatcaaaatttgagatgaGATTCTTTCTTACATTAAGTAGATAAA
AAAGTTTCGTTCTTGCTCTTTGATTCAGGTAAAAGTAAATCAAGACATCC
CAGAAACCGTTGGTAACACCAAAAGCTGATAAAATAAATTGCCAATCAAT
ACTAAAGTCTAAGAGAAATTGTAAATTGACCACAATCATTAATGGAAACC
AGGTCATAAGATACGAAGCTGTAATGTAGATACAAATCTTCAACGATTTC
AATTTTCGTTTTCTCAAACTTTCTCGTTTCTTGCTTTGTACTTTATGGGA
AGCATcgatgatggttctggtgatcCCCTCGCATTGCCGACGAACTGACC
GATAcagaaaaatgtttgaaatgaaaatagcGAAACCTCCAGATATAGTG
ACTACGCTAGCGATAAAATACGCTGTTAGCGAATAGTATCTCCAGACGGC
ATAACTCAAAACAGCAAATATAGGATTCAAAATGGCTGATATAGCATGGA
ATTTACCAAGTCTTGCATACAAGAACGGTTTACGGATAGCCACGAATCTT
TCAAAAGATACCAAGATTGTATAATCGATTTCTAAGCTGATCGCGACTTC
ACGAATGTACCAGAAAATGCTCTGGTTTACGATTGGGTAGTTTATTACGC
ATGCGCATACGATATTCAAAATGGCAGCCAATAAATGTGCtataaaaagt
atcaaaagtagCCAATCATTGAATGTTCTTCGAAGATTTTTTGAGCTTAA
TATTGTTAGGATTGCAATCAAGTTGAATAAAACAATCACTATAGATTCGA Run BLAST on NCBI protein sequence of TCONS_00058783-protein >TCONS_00058783-protein ID=TCONS_00058783-protein|Name=TCONS_00058783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
ESIVIVLFNLIAILTILSSKNLRRTFNDWLLLILFIAHLLAAILNIVCAC
VINYPIVNQSIFWYIREVAISLEIDYTILVSFERFVAIRKPFLYARLGKF
HAISAILNPIFAVLSYAVWRYYSLTAYFIASVVTISGGFAIFISNIFLYR
SVRRQCEGITRTIIDASHKVQSKKRESLRKRKLKSLKICIYITASYLMTW
FPLMIVVNLQFLLDFSIDWQFILSAFGVTNGFWDVLIYFYLNQRARTKLF
YLLNVRKNLISNFDLD Run BLAST on NCBI transcript from alignment at scaffold_313:75933..76732 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058783 ID=TCONS_00058783|Name=TCONS_00058783|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at scaffold_313:75933..76732 (Clytia hemisphaerica)
TCGAATCTATAGTGATTGTTTTATTCAACTTGATTGCAATCCTAACAATA
TTAAGCTCAAAAAATCTTCGAAGAACATTCAATGATTGGctacttttgat
actttttataGCACATTTATTGGCTGCCATTTTGAATATCGTATGCGCAT
GCGTAATAAACTACCCAATCGTAAACCAGAGCATTTTCTGGTACATTCGT
GAAGTCGCGATCAGCTTAGAAATCGATTATACAATCTTGGTATCTTTTGA
AAGATTCGTGGCTATCCGTAAACCGTTCTTGTATGCAAGACTTGGTAAAT
TCCATGCTATATCAGCCATTTTGAATCCTATATTTGCTGTTTTGAGTTAT
GCCGTCTGGAGATACTATTCGCTAACAGCGTATTTTATCGCTAGCGTAGT
CACTATATCTGGAGGTTTCgctattttcatttcaaacatttttctgTATC
GGTCAGTTCGTCGGCAATGCGAGGGgatcaccagaaccatcatcgATGCT
TCCCATAAAGTACAAAGCAAGAAACGAGAAAGTTTGAGAAAACGAAAATT
GAAATCGTTGAAGATTTGTATCTACATTACAGCTTCGTATCTTATGACCT
GGTTTCCATTAATGATTGTGGTCAATTTACAATTTCTCTTAGACTTTAGT
ATTGATTGGCAATTTATTTTATCAGCTTTTGGTGTTACCAACGGTTTCTG
GGATGTCTTGATTTACTTTTACCTGAATCAAAGAGCAAGAACGAAACTTT
TTTATCTACTTAATGTAAGAAAGAATCtcatctcaaattttgatctcgAT
Coding sequence (CDS) from alignment at scaffold_313:75933..76732 >TCONS_00058783 ID=TCONS_00058783|Name=TCONS_00058783|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_313:75933..76732 (Clytia hemisphaerica)
GAATCTATAGTGATTGTTTTATTCAACTTGATTGCAATCCTAACAATATT
AAGCTCAAAAAATCTTCGAAGAACATTCAATGATTGGctacttttgatac
tttttataGCACATTTATTGGCTGCCATTTTGAATATCGTATGCGCATGC
GTAATAAACTACCCAATCGTAAACCAGAGCATTTTCTGGTACATTCGTGA
AGTCGCGATCAGCTTAGAAATCGATTATACAATCTTGGTATCTTTTGAAA
GATTCGTGGCTATCCGTAAACCGTTCTTGTATGCAAGACTTGGTAAATTC
CATGCTATATCAGCCATTTTGAATCCTATATTTGCTGTTTTGAGTTATGC
CGTCTGGAGATACTATTCGCTAACAGCGTATTTTATCGCTAGCGTAGTCA
CTATATCTGGAGGTTTCgctattttcatttcaaacatttttctgTATCGG
TCAGTTCGTCGGCAATGCGAGGGgatcaccagaaccatcatcgATGCTTC
CCATAAAGTACAAAGCAAGAAACGAGAAAGTTTGAGAAAACGAAAATTGA
AATCGTTGAAGATTTGTATCTACATTACAGCTTCGTATCTTATGACCTGG
TTTCCATTAATGATTGTGGTCAATTTACAATTTCTCTTAGACTTTAGTAT
TGATTGGCAATTTATTTTATCAGCTTTTGGTGTTACCAACGGTTTCTGGG
ATGTCTTGATTTACTTTTACCTGAATCAAAGAGCAAGAACGAAACTTTTT
TATCTACTTAATGTAAGAAAGAATCtcatctcaaattttgatctcgAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058783-exon-scaffold_313-1491911889:75933..76732 | TCONS_00058783-exon-scaffold_313-1491911889:75933..76732 | Clytia hemisphaerica | exon |
| TCONS_00058783-exon-scaffold_313-1510915933:75933..76732 | TCONS_00058783-exon-scaffold_313-1510915933:75933..76732 | Clytia hemisphaerica | exon |
| TCONS_00058783-exon-scaffold_313-1575043694:75933..76732 | TCONS_00058783-exon-scaffold_313-1575043694:75933..76732 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:75933..76732 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
