Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=transcript|length=1188bp atgatattttggccaatgtTTCTAGTTGGAGGGGgtccgggtctgtgaga aagagGTGTAAAAACTGAATGGTTCATGATTAAGATACAGAATTAAAGAA ATGAGCTGGAGTAATTACATATTCGTATAAAAAGCTTCATATTTATCATT GAAACGATAACACGATATATTTTAAAGTCTATAAAGAAGTTTATTTAATT CACAAGAGGTTCTCCATTCTTAATAGTCATCTCTGTAATGTATCTGTCCG AAAATTTCCGCAACACAGCTTTACGTCCAAAAATCTTTTGCATTAACTGT CGTCTTGCTTCAGCATTCAGTGCAAAGAAAATAAGAACGTCCCATATTCC ATTACTAAAACTAACAACCGCAAAAATCTTCCTCAAAAGGAGTGAAGTGT CCGTTTTTTGATTTCCGATGGCCACCACGATCAAGGGAAACCAGGTAAAA ATGTAAGAGCTGGCAATGAATAAAcatattttcaaagattttaattGACG TTTTCTTATCTCGTTccgtttttcattttgtttttgagtgGAGCGATCGA CAATGGTTGCTGCTATTTGACTACATTGTTTCTTGACGGATCGGTACAGT AAAAAGTTTGATATGATGATAAAAATGCCACCACTTGTTATAACGATGAA AGCTGAAAGGTAAGCTTTAACTGAGAATATCGAAAATATTGTGAAGAAGG TTGTTAACCCGATCGCTACTCCGATGCTTGCAATCCCATGTATCTTTGTC AGTTTAGCGTAGAAGAACGGTTTTCGTACTGCTATGAACCTCTCGAACGA TAGAAGGATAGAGAAATTGATTTCCAAGCTGATCGCGCAATCTCGAGCAA TAATAGCTCCAGTGTAACCTTTGGAATAGACATCTGACCAGATATCGAAA GAAATGTATATGATAATGCATATCCCGTTCAGTAAATGCGATAAGAATAA CGCGCTGAGAAGGATATTGTAGAAGGATGAACGAAGGTTTCTGGACGACA CAATAATGCCAAATGAAACAAAGttcaggaaaatcaaaataaatcctTCC ACAAAAATAAAACTATTAGCAATTTcgatttgctttttaatcatattttt tctaaaatattttcaacaaacTAGAAAATTGACCAAGCGAAAAAATTCCA ATAGATCAGAACAATTTTTAGGCTTGGAAGAGAACTGA Run BLAST on NCBI protein sequence of TCONS_00058784-protein >TCONS_00058784-protein ID=TCONS_00058784-protein|Name=TCONS_00058784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MIKKQIEIANSFIFVEGFILIFLNFVSFGIIVSSRNLRSSFYNILLSALF LSHLLNGICIIIYISFDIWSDVYSKGYTGAIIARDCAISLEINFSILLSF ERFIAVRKPFFYAKLTKIHGIASIGVAIGLTTFFTIFSIFSVKAYLSAFI VITSGGIFIIISNFLLYRSVKKQCSQIAATIVDRSTQKQNEKRNEIRKRQ LKSLKICLFIASSYIFTWFPLIVVAIGNQKTDTSLLLRKIFAVVSFSNGI WDVLIFFALNAEARRQLMQKIFGRKAVLRKFSDRYITEMTIKNGEPLVN Run BLAST on NCBI transcript from alignment at scaffold_313:77900..79087 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at scaffold_313:77900..79087 (Clytia hemisphaerica) TCAGTTCTCTTCCAAGCCTAAAAATTGTTCTGATCTATTGGAATTTTTTC
GCTTGGTCAATTTTCTAgtttgttgaaaatattttagaaaaaatatgatt
aaaaagcaaatcgAAATTGCTAATAGTTTTATTTTTGTGGAaggatttat
tttgattttcctgaaCTTTGTTTCATTTGGCATTATTGTGTCGTCCAGAA
ACCTTCGTTCATCCTTCTACAATATCCTTCTCAGCGCGTTATTCTTATCG
CATTTACTGAACGGGATATGCATTATCATATACATTTCTTTCGATATCTG
GTCAGATGTCTATTCCAAAGGTTACACTGGAGCTATTATTGCTCGAGATT
GCGCGATCAGCTTGGAAATCAATTTCTCTATCCTTCTATCGTTCGAGAGG
TTCATAGCAGTACGAAAACCGTTCTTCTACGCTAAACTGACAAAGATACA
TGGGATTGCAAGCATCGGAGTAGCGATCGGGTTAACAACCTTCTTCACAA
TATTTTCGATATTCTCAGTTAAAGCTTACCTTTCAGCTTTCATCGTTATA
ACAAGTGGTGGCATTTTTATCATCATATCAAACTTTTTACTGTACCGATC
CGTCAAGAAACAATGTAGTCAAATAGCAGCAACCATTGTCGATCGCTCca
ctcaaaaacaaaatgaaaaacggAACGAGATAAGAAAACGTCaattaaaa
tctttgaaaatatgTTTATTCATTGCCAGCTCTTACATTTTTACCTGGTT
TCCCTTGATCGTGGTGGCCATCGGAAATCAAAAAACGGACACTTCACTCC
TTTTGAGGAAGATTTTTGCGGTTGTTAGTTTTAGTAATGGAATATGGGAC
GTTCTTATTTTCTTTGCACTGAATGCTGAAGCAAGACGACAGTTAATGCA
AAAGATTTTTGGACGTAAAGCTGTGTTGCGGAAATTTTCGGACAGATACA
TTACAGAGATGACTATTAAGAATGGAGAACCTCTTGTGAATTAAATAAAC
TTCTTTATAGACTTTAAAATATATCGTGTTATCGTTTCAATGATAAATAT
GAAGCTTTTTATACGAATATGTAATTACTCCAGCTCATTTCTTTAATTCT
GTATCTTAATCATGAACCATTCAGTTTTTACACctctttctcacagaccc
ggacCCCCTCCAACTAGAAacattggccaaaatatcat Coding sequence (CDS) from alignment at scaffold_313:77900..79087 >TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_313:77900..79087 (Clytia hemisphaerica) atgattaaaaagcaaatcgAAATTGCTAATAGTTTTATTTTTGTGGAagg atttattttgattttcctgaaCTTTGTTTCATTTGGCATTATTGTGTCGT CCAGAAACCTTCGTTCATCCTTCTACAATATCCTTCTCAGCGCGTTATTC TTATCGCATTTACTGAACGGGATATGCATTATCATATACATTTCTTTCGA TATCTGGTCAGATGTCTATTCCAAAGGTTACACTGGAGCTATTATTGCTC GAGATTGCGCGATCAGCTTGGAAATCAATTTCTCTATCCTTCTATCGTTC GAGAGGTTCATAGCAGTACGAAAACCGTTCTTCTACGCTAAACTGACAAA GATACATGGGATTGCAAGCATCGGAGTAGCGATCGGGTTAACAACCTTCT TCACAATATTTTCGATATTCTCAGTTAAAGCTTACCTTTCAGCTTTCATC GTTATAACAAGTGGTGGCATTTTTATCATCATATCAAACTTTTTACTGTA CCGATCCGTCAAGAAACAATGTAGTCAAATAGCAGCAACCATTGTCGATC GCTCcactcaaaaacaaaatgaaaaacggAACGAGATAAGAAAACGTCaa ttaaaatctttgaaaatatgTTTATTCATTGCCAGCTCTTACATTTTTAC CTGGTTTCCCTTGATCGTGGTGGCCATCGGAAATCAAAAAACGGACACTT CACTCCTTTTGAGGAAGATTTTTGCGGTTGTTAGTTTTAGTAATGGAATA TGGGACGTTCTTATTTTCTTTGCACTGAATGCTGAAGCAAGACGACAGTT AATGCAAAAGATTTTTGGACGTAAAGCTGTGTTGCGGAAATTTTCGGACA GATACATTACAGAGATGACTATTAAGAATGGAGAACCTCTTGTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058784-exon-scaffold_313-1491911889:77900..79087 | TCONS_00058784-exon-scaffold_313-1491911889:77900..79087 | Clytia hemisphaerica | exon |
TCONS_00058784-exon-scaffold_313-1510915933:77900..79087 | TCONS_00058784-exon-scaffold_313-1510915933:77900..79087 | Clytia hemisphaerica | exon |
TCONS_00058784-exon-scaffold_313-1575043694:77900..79087 | TCONS_00058784-exon-scaffold_313-1575043694:77900..79087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_313 | supercontig | scaffold_313:77900..79087 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|