TCONS_00058784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058784
Unique NameTCONS_00058784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=transcript|length=1188bp
atgatattttggccaatgtTTCTAGTTGGAGGGGgtccgggtctgtgaga
aagagGTGTAAAAACTGAATGGTTCATGATTAAGATACAGAATTAAAGAA
ATGAGCTGGAGTAATTACATATTCGTATAAAAAGCTTCATATTTATCATT
GAAACGATAACACGATATATTTTAAAGTCTATAAAGAAGTTTATTTAATT
CACAAGAGGTTCTCCATTCTTAATAGTCATCTCTGTAATGTATCTGTCCG
AAAATTTCCGCAACACAGCTTTACGTCCAAAAATCTTTTGCATTAACTGT
CGTCTTGCTTCAGCATTCAGTGCAAAGAAAATAAGAACGTCCCATATTCC
ATTACTAAAACTAACAACCGCAAAAATCTTCCTCAAAAGGAGTGAAGTGT
CCGTTTTTTGATTTCCGATGGCCACCACGATCAAGGGAAACCAGGTAAAA
ATGTAAGAGCTGGCAATGAATAAAcatattttcaaagattttaattGACG
TTTTCTTATCTCGTTccgtttttcattttgtttttgagtgGAGCGATCGA
CAATGGTTGCTGCTATTTGACTACATTGTTTCTTGACGGATCGGTACAGT
AAAAAGTTTGATATGATGATAAAAATGCCACCACTTGTTATAACGATGAA
AGCTGAAAGGTAAGCTTTAACTGAGAATATCGAAAATATTGTGAAGAAGG
TTGTTAACCCGATCGCTACTCCGATGCTTGCAATCCCATGTATCTTTGTC
AGTTTAGCGTAGAAGAACGGTTTTCGTACTGCTATGAACCTCTCGAACGA
TAGAAGGATAGAGAAATTGATTTCCAAGCTGATCGCGCAATCTCGAGCAA
TAATAGCTCCAGTGTAACCTTTGGAATAGACATCTGACCAGATATCGAAA
GAAATGTATATGATAATGCATATCCCGTTCAGTAAATGCGATAAGAATAA
CGCGCTGAGAAGGATATTGTAGAAGGATGAACGAAGGTTTCTGGACGACA
CAATAATGCCAAATGAAACAAAGttcaggaaaatcaaaataaatcctTCC
ACAAAAATAAAACTATTAGCAATTTcgatttgctttttaatcatattttt
tctaaaatattttcaacaaacTAGAAAATTGACCAAGCGAAAAAATTCCA
ATAGATCAGAACAATTTTTAGGCTTGGAAGAGAACTGA
Run BLAST on NCBI

protein sequence of TCONS_00058784-protein

>TCONS_00058784-protein ID=TCONS_00058784-protein|Name=TCONS_00058784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MIKKQIEIANSFIFVEGFILIFLNFVSFGIIVSSRNLRSSFYNILLSALF
LSHLLNGICIIIYISFDIWSDVYSKGYTGAIIARDCAISLEINFSILLSF
ERFIAVRKPFFYAKLTKIHGIASIGVAIGLTTFFTIFSIFSVKAYLSAFI
VITSGGIFIIISNFLLYRSVKKQCSQIAATIVDRSTQKQNEKRNEIRKRQ
LKSLKICLFIASSYIFTWFPLIVVAIGNQKTDTSLLLRKIFAVVSFSNGI
WDVLIFFALNAEARRQLMQKIFGRKAVLRKFSDRYITEMTIKNGEPLVN
Run BLAST on NCBI

transcript from alignment at scaffold_313:77900..79087

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at scaffold_313:77900..79087 (Clytia hemisphaerica)
TCAGTTCTCTTCCAAGCCTAAAAATTGTTCTGATCTATTGGAATTTTTTC GCTTGGTCAATTTTCTAgtttgttgaaaatattttagaaaaaatatgatt aaaaagcaaatcgAAATTGCTAATAGTTTTATTTTTGTGGAaggatttat tttgattttcctgaaCTTTGTTTCATTTGGCATTATTGTGTCGTCCAGAA ACCTTCGTTCATCCTTCTACAATATCCTTCTCAGCGCGTTATTCTTATCG CATTTACTGAACGGGATATGCATTATCATATACATTTCTTTCGATATCTG GTCAGATGTCTATTCCAAAGGTTACACTGGAGCTATTATTGCTCGAGATT GCGCGATCAGCTTGGAAATCAATTTCTCTATCCTTCTATCGTTCGAGAGG TTCATAGCAGTACGAAAACCGTTCTTCTACGCTAAACTGACAAAGATACA TGGGATTGCAAGCATCGGAGTAGCGATCGGGTTAACAACCTTCTTCACAA TATTTTCGATATTCTCAGTTAAAGCTTACCTTTCAGCTTTCATCGTTATA ACAAGTGGTGGCATTTTTATCATCATATCAAACTTTTTACTGTACCGATC CGTCAAGAAACAATGTAGTCAAATAGCAGCAACCATTGTCGATCGCTCca ctcaaaaacaaaatgaaaaacggAACGAGATAAGAAAACGTCaattaaaa tctttgaaaatatgTTTATTCATTGCCAGCTCTTACATTTTTACCTGGTT TCCCTTGATCGTGGTGGCCATCGGAAATCAAAAAACGGACACTTCACTCC TTTTGAGGAAGATTTTTGCGGTTGTTAGTTTTAGTAATGGAATATGGGAC GTTCTTATTTTCTTTGCACTGAATGCTGAAGCAAGACGACAGTTAATGCA AAAGATTTTTGGACGTAAAGCTGTGTTGCGGAAATTTTCGGACAGATACA TTACAGAGATGACTATTAAGAATGGAGAACCTCTTGTGAATTAAATAAAC TTCTTTATAGACTTTAAAATATATCGTGTTATCGTTTCAATGATAAATAT GAAGCTTTTTATACGAATATGTAATTACTCCAGCTCATTTCTTTAATTCT GTATCTTAATCATGAACCATTCAGTTTTTACACctctttctcacagaccc ggacCCCCTCCAACTAGAAacattggccaaaatatcat

Coding sequence (CDS) from alignment at scaffold_313:77900..79087

>TCONS_00058784 ID=TCONS_00058784|Name=TCONS_00058784|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_313:77900..79087 (Clytia hemisphaerica)
atgattaaaaagcaaatcgAAATTGCTAATAGTTTTATTTTTGTGGAagg
atttattttgattttcctgaaCTTTGTTTCATTTGGCATTATTGTGTCGT
CCAGAAACCTTCGTTCATCCTTCTACAATATCCTTCTCAGCGCGTTATTC
TTATCGCATTTACTGAACGGGATATGCATTATCATATACATTTCTTTCGA
TATCTGGTCAGATGTCTATTCCAAAGGTTACACTGGAGCTATTATTGCTC
GAGATTGCGCGATCAGCTTGGAAATCAATTTCTCTATCCTTCTATCGTTC
GAGAGGTTCATAGCAGTACGAAAACCGTTCTTCTACGCTAAACTGACAAA
GATACATGGGATTGCAAGCATCGGAGTAGCGATCGGGTTAACAACCTTCT
TCACAATATTTTCGATATTCTCAGTTAAAGCTTACCTTTCAGCTTTCATC
GTTATAACAAGTGGTGGCATTTTTATCATCATATCAAACTTTTTACTGTA
CCGATCCGTCAAGAAACAATGTAGTCAAATAGCAGCAACCATTGTCGATC
GCTCcactcaaaaacaaaatgaaaaacggAACGAGATAAGAAAACGTCaa
ttaaaatctttgaaaatatgTTTATTCATTGCCAGCTCTTACATTTTTAC
CTGGTTTCCCTTGATCGTGGTGGCCATCGGAAATCAAAAAACGGACACTT
CACTCCTTTTGAGGAAGATTTTTGCGGTTGTTAGTTTTAGTAATGGAATA
TGGGACGTTCTTATTTTCTTTGCACTGAATGCTGAAGCAAGACGACAGTT
AATGCAAAAGATTTTTGGACGTAAAGCTGTGTTGCGGAAATTTTCGGACA
GATACATTACAGAGATGACTATTAAGAATGGAGAACCTCTTGTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037027XLOC_037027Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058784-proteinTCONS_00058784-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058784-exon-scaffold_313-1491911889:77900..79087TCONS_00058784-exon-scaffold_313-1491911889:77900..79087Clytia hemisphaericaexon
TCONS_00058784-exon-scaffold_313-1510915933:77900..79087TCONS_00058784-exon-scaffold_313-1510915933:77900..79087Clytia hemisphaericaexon
TCONS_00058784-exon-scaffold_313-1575043694:77900..79087TCONS_00058784-exon-scaffold_313-1575043694:77900..79087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:77900..79087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (5.03889 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.139772 0 0.0305377 0.0378259 0.146859 0.265483 1.15686 0.951117 0 0.0662486 1.16978 0.975923 4.62271 5.03889 0.840904 1.02541 1.53737 1.47325 2.10103 2.15291 0.0993811 0.0530311 0 0.0409801
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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