TCONS_00058694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058694
Unique NameTCONS_00058694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058694 ID=TCONS_00058694|Name=TCONS_00058694|organism=Clytia hemisphaerica|type=transcript|length=274bp
tttagggGCATTTGTTATGAAGAAAAATGGCGGAAAGTGTGGAGTTTGCG
GTGACCCATATCATGCTAAAGTTCAACCACATGCAGATGGTGGGAAATAT
GCCAACGGTATCATCACCAGAACATACAAACAAGGACAAGTCATCGATGT
TAAGATTTATTTAACTATGTCGCATCTTGGTTATTTTGAATTCCGTATCG
GGGAATTCGACAATAAAAAGACCTCGGGAAATGCGATCGGAAAATTAAAT
GGTCACCTCATGGATTTGGTGAGT
Run BLAST on NCBI

transcript from alignment at scaffold_313:131652..138045+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058694 ID=TCONS_00058694|Name=TCONS_00058694|organism=Clytia hemisphaerica|type=transcript|length=6394bp|location=Sequence derived from alignment at scaffold_313:131652..138045+ (Clytia hemisphaerica)
tttagggGCATTTGTTATGAAGAAAAATGGCGGAAAGTGTGGAGTTTGCG GTGACCCATATCATGCTAAAGTTCAACCACATGCGTAAGTCAATAACAAG TTTTTTGTCACATTGTAATTCCTACTTCGATTGTTTTTAATCTACTAATA CTATTAAAAGGGTATTTCCTCCTCATTTTCATACCCATTGCCCACGTATG ATTCTCTTCTTCTCTTTTATACGATATTTGGTCTTCTATCTAGCTTGTTT TCGTTTCATGTACGCTATGTTTCACTTAAATCCTCCCACAGATATTATTC TCGAATCCTGTTTACGTAGATTTCATTCTAACAAAGTAAACCTTTTAACT TACCGAATCTACCCAGCGGCAGTTTTTGACATGGTTTTTGacacgcaagt ttctgcgtagctagccggggattctataaggccggaacaccggattcttc cagtcatttatacaaactaaatcccgtagcAATAAACGTATTATCTtata actaggtcacagtgtggatgtaaaccacactgaaacgaccgccttccacc acgcatcacgctcgcgaaagagcgcgcgcacgttatcaacgcctacatgt catctccagtacattttagattattcattgaaaacagattagaatatagt catttttcatgtctcgattattcaattccgaataaaagacattcggggaa aaaaaagagaaacacctgggtaatctagttaaaaaccgaaagtaaatagt agacaaagtaatgagccaaggcaaaacgagattagcgtaccactatgaaa gaaaccgcctccggcggtcgataataataataataatgctatacaagttc gcaggccaccatgcgagcacatgggcctctatgaaccgctctttgttcgg tttacaattttcttaaggtagagttttttcctagggctcccgcaaatttt ttttccgtgaacGGACGGAAGTATCTTCGACGGTCAGAAGTATCATCTTT TGACGGTCGgaagtatcatttttaatttttcctatccgtTATTCCGTGGT TTAGGGGGTATTGGGTCATTACCAATCaattaggtagggtcagggttgct agtaacggcttgtcactgtgccgggtgcatactggGCGCCTTGGGNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNgagttgctagtaacggctcgaatt tcagtcagtttaaaaaaggggtacttttacccatattataataacattac ccccgtcttttgccagttcggtatgatttgttatgaattgcgtgtatttg ctgtgcggcgatggctcaacggatagagcgctggctttcgaagctgaagg tctttctttggtggtggttcgaatcccactcggtgcgaaaattagacagg tcgaaattgatggacaaatgattgacaggtatgaaaactcagtcagaaat gagaaactaagtctcagaaagtagaaaaacagataaggtgaaagatagga aagggaaaTTGGGCCGTCAAAAGATGATACTTCTGACCGTCGAAGATACT TCTGACCGTCGAAGATACTTCCGTCCgttcacggaaaaaaaatttgcagg gctccccctgactttgaatttgaagtttGCGTCCTTTATTGAAGTATTCA TTTCTTGGGCTTTGATACACCACTCTTTGGTTgtcttcctttcacttttc gCAAGATCTTCTGTCACGCGGAAGGGTAATCTTAAGGGTAATCCTCCTTT GGTGATTGCCTTTaacactgtatttttgtcttcttcgtttgCAAATCGGA CTTTTATTGGTCGATAGTGTTTCTCATCTTCTCtttccttcgaaaatttt ccgattctttgagtttcttcGATTTTTATATTCCTTAAGCGTAGCATCAT AGGTAAAGACTTTTTCATGAATATATTCTTTGTCGTAGATTTTGGTTGAC TCCTCTGAATCTTCAGTGGATTCGTTAACACCGAGTTAATCGAGTTAATC CgagttttaagttttgaaattttgaaatttggcttAATCAATAATTTCAA CGCTCTTTGTTGAAAATGAATTAACTTTTTGCCAAGTTTACGTAACGATT TACAATAATTTATTTCAAAGTTCCGAGTTATAACTCGGATTGCGTTTTGA AATTTGGGTTTAATTATTAAATTTTTGAGCGAAAAATAACATTTCAGCCA ATTCTAAAGTGCTCAGAAAGCCAAACAAACAAATCAATCTTTGGAAAACA TCTTAAGTACAATCCTTTGNAGAAAgccaaacaaacaaataaatctTTGG AAAACATCTTAAGTACAATCCTTTGTTCAGAACAACTCAGAAACACACGG AAACTAGGGGGTGTTCTTGTACCaccccataacttttgatctaattgatg gtctttttggatgaaatttggcattcATATAAgataacttttgacaaaaa aatcttttttgatgaagtcactcatcatgcccaaagtaagcaaaaaccga aaatttcctttgttcttgtGAATAGCCATTGTATTATAACAAAGacttaa gaaaaaaattccccgagtttaaaatgcttattttatcctaaatattcaat aaattacggtttaaacgatatatttgacatgaaaataaatttgtattgaa aaagtgtcattttttgtgtcaccttactgtcagaaataaGTGGACTTGCG TTTTTCGTTTTTAACAGATTGCTCTATAAACTTTCAGTGTGAAGATTAAC AAATTTTACACCATTTTCTTGCATGAAAAATTCTCATTGCAATGATATTA ATTTGTTTCGATAAAACTTGGTTGAGCTTCGGGAAAGCAGATTAATTTCT TACCTTCCTGTGAGCATGCTTCCTGCTTTAGAGGTTTTATCTAATGATGC GGTCGTGATACGGTTATATCATTTGAattgctaggaaattctgagcaaga aaatatagctttatTTTGGTCTGAACGAGGTGTTCTCAAAATATAAGCCT CTAAAGTTCACGCATAATCAGACTCAACCTACCTACCTAGGTCGGGCGCC AGCCCGGACCCCATGAATTCTTCTTTTACAGCCTTCTCTATCCATCATTG CTGTTCAAATCTCGTTTTCATTCTCACACCCAGTGTCTCTTAACAATGTG TCAATGAATGTCGTCTTGCGCTTTCCTCTTTTCGATCTACCTCGTGTTGG GTTCCAAAGCACAAGTTTTGAGGCTTCTTCTTCATTATGGAGAACACAAT GACCTGTGAGACGCATTCATCTTTCTCTTATTTTTGATGAGAGCTTGGGT AATGTGCCATATAAAATGACATTTGAAACATGATCTCGCCTAGAAATGTT TAATGCTGAGCGAAGTAATCTCGTGTAAGTTCCAGCGATCATTTTCTCTG TGGATTTTGTAAGAGTCCACGTCTCACAACCGTTAAGAAGTACACTCTCT ACTGTAGAACAAAATCAAGTAAAACAGGTCCagatttggaggttcttgga tcactcgttgaccaaatttttttttttgtactttttggcttaaaatcttg ctggaaagactcactttttttttgcttgaccatgaggcccaatccaattc ctacgagttaaaccaaaaatgacgatttctaactcaaactgggcattaca ggagggcttcgccctcctacatagcccatatCTGATATATACGGCAttgg tacttaaagggttaagggcAAATGACCTGGTACATGACGAGACGTATTTC CATCATTTTCAAGAAGCCTTTTCCCTCTTTATACTCTGAGTACATTGAGC TAAAAACTACCACCGTGCTGCCTCACCGGCCTCACCctagtaccctgagt atcagaggttgagttttcaacgAAAATATCAACCtttgaagaccaataat agaaattttattgcgtatgtgtcaatctaatcactgtagaaggaatcaaa gatgaagagcaaataacATAtaaatgtctagcagactgtatctatgatct tggattaagttcaaagttgatattagttccatttatactgagatggaaaa atcgtctgagacaagtagtttgtaaaatgtgatttgtggaggagatccta tttattgaaacatgaatggaaacatttgggaatcatttaaaagatatctt ttgaaataaacTCATCTCAATTACacttttttctgggaaattcgtcaaca gtaaactgcatactgatacagtgaCACccgagtatcagaggttgagaata tttcaacctctgaacaccaataatagaaattatatcgcgcatgtgtcaat ctaatcactgtagaaaaaatcaaagatgacgagcaaatattaccatatta atgtctagcagactgtatcagtatacagtttactatttacgaactcccca gaaacctccaagtgtaattgaaattatAGCCCTGTaatacaactgtcaat catttttgagaaaactgaTTGGATAATTGATGTCACGTGGCCGGTTAATA TTTCCCCATAGTGACCAGTTGGAAATTGACATCTTTAGAATGTTAATTTT TACGAtgtagaacaatagaatacacttgttaattacttttattactttat tatANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNcccaaatgtataacagtaattactaaac ttttaattattgaaatgtcactttaattgaatcgaaataatagacagact ttatgttatgattctctataactgattctttttaaaaagcattgatgata atTTTGAGTTGTATTTTCAACGATGGgaataagaaatatcaaatctgaac ttcatccaagatcttggatggtcgccatggttacttttctctgcgttgat tgcgcgctgaatagaatctggattggttgGCACAGCGTCGATGTACAATT TCGACCTGTGGTTTTCACGGTATCACCCTAGTATTAAACGTTGAAAGTTA GCATCTAAAATCTAGATTTTATTAAACCAACCTAATTCAACGGATTCATA GTTCATTtgctaaatttcttttttatattcgtCCCCAAAGTCCATCCTGA GATAATTGTCTCCTTTGGATTTTCCATCCCAAATACAACTTTGACAAACC ACTAAAGGTCCACCAAAACATCGAAGCATGAGTTTTTGAATCATTTCAAA TAATCCTTGGTCTAAGTAATTTTATTTAAGATGAATTTTTATCCGACGTT TCAGAGATGGTGGGAAATATGCCAACGGTATCATCACCAGAACATACAAA CAAGGACAAGTCATCGATGTTAAGATTTATTTAACTATGTCGCATCTTGG TTATTTTGAATTCCGTATCGGGGAATTCGACAATAAAAAGACCTCGGGAA ATGCGATCGGAAAATTAAATGGTCACCTCATGGATTTGGTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036978XLOC_036978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058694-exon-scaffold_313-1491911889:131652..131735TCONS_00058694-exon-scaffold_313-1491911889:131652..131735Clytia hemisphaericaexon
TCONS_00058694-exon-scaffold_313-1510915933:131652..131735TCONS_00058694-exon-scaffold_313-1510915933:131652..131735Clytia hemisphaericaexon
TCONS_00058694-exon-scaffold_313-1575043694:131652..131735TCONS_00058694-exon-scaffold_313-1575043694:131652..131735Clytia hemisphaericaexon
TCONS_00058694-exon-scaffold_313-1491911889:137856..138045TCONS_00058694-exon-scaffold_313-1491911889:137856..138045Clytia hemisphaericaexon
TCONS_00058694-exon-scaffold_313-1510915933:137856..138045TCONS_00058694-exon-scaffold_313-1510915933:137856..138045Clytia hemisphaericaexon
TCONS_00058694-exon-scaffold_313-1575043694:137856..138045TCONS_00058694-exon-scaffold_313-1575043694:137856..138045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:131652..138045 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (514.378 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0.713779 69.2774 89.8484 31.5974 76.6024 6.74527 4.09637 455.245 514.378 61.26 71.6917 161.044 149.484 69.1066 89.5465 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
tttagggGCATTTGTTATGAAGAAAAATGGCGGAAAGTGTGGAGTTTGCGGTGACCCATATCATGCTAAAGTTCAACCACATGCAGATGGTGGGAAATATGCCAACGGTATCATCACCAGAACATACAAACAAGGACAAGTCATCGATGTTAAGATTTATTTAACTATGTCGCATCTTGGTTATTTTGAATTCCGTATCGGGGAATTCGACAATAAAAAGACCTCGGGAAATGCGATCGGAAAATTAAATGGTCACCTCATGGATTTGGTGAGT20406080100120140160180200220240260Sequence
Match NameE-valueIdentityDescription
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