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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058698 ID=TCONS_00058698|Name=TCONS_00058698|organism=Clytia hemisphaerica|type=transcript|length=1498bp
aaaaatctcCATTGCACTTTGAAAACAAGTATAAATAGTTTGGCTTTCTG
GAACGGTATCATAAAACAGAAAGACACTGCAGATGCTTCAAAATGATGTA
TCGAACTTTAGAAGCCATAGCATTGATAAGTATTTTGTCGATCTGTAACA
GCCAAACAATACCAACAATTGCAGAGCGAAATGCAGCTGTTCAGGTTATC
AAAGATATCATTAATAGTCACAAGGAGCCGATAGGGGACGATGATCCACC
GACGAAGTTTAGACATCCGTTTCGGGCTGGATTTGTACGGCTAGCGTTTC
ACGATTGTGTTCACGGCTCAGGATACACGACAAAAGCATGTGACGGATGT
ATCAATCATGCTAACCCAGAAAATGCCGGGTTGAAACGATATACAGATGA
ACTTGATGCAGCATACGCTGACGTTAGTAATGGTGTAGCTACAAGCATGA
CTAATGCCGACTTCTACACATTAGCAGGTGTTGTCGCCCTTGACGAGGCG
GCTGAACCAGGTGCAACTATTCCACAACAATTTAACGGATTGGAAATATT
GAAATTTGGTAGAAAAGACCCTGACGATTGCGCAACAGACGTAGACGACG
AAGACGACTTCTTATCGCCCCATATCGGTCGTTTCCAGGGAAATAATGGT
ATTGAGAAATTTTTCGACCGTAGATTTGGATTCAGTCTCCAAGATTCAGT
CGCTATCTTGGGTGCACATACGTTAGGTAAAGCTCATTTTgagaattcaa
aatttgaaggcATGTGGACCACAGCTGTTAATAACAATGGAGCACAATCC
GATTTTCTCAACAATCGTTATTACAGACATATTGCTGGTGATTGGACCCA
AGTAGCTGCACAAGGTCCAGGAGGTGCAAGTGGAAACATGCAATGGAAAC
GTACGAGTGGTGGTGGAATCCGTTTAATGTTGAATGTTGACATGGCGATT
GCTTTCGATTTGCACAATAATAATACGGAGAATCCATTTCAGAACGAGCC
ACAAGGACAGGTCAACACGTGTGTAATCGATGTCGAAGAGGACGAAGTTG
GGAGCAAAAAACCTGGAAACCAAACATGTGAAGCAGTTGCACCCAACATA
TGTTGTCCAAGATCAACCACAAACGAGGGAGGCGAAGATGAAGAAACGAA
TTATTTCTTCAGATATGCCACTAATAATCAAAGATGGATAAGTGAATTCA
AAACTGCCtacttcaaaatgattttcaacAATGAAGTTGGATTATCAGCA
GCTACACCATAATCGAGGAACCATATGAATGGCTATcataaagtttttat
aaaaacacaccTTTAAAGACTAACTCCAAAAAGAATCGACATCACATCGA
AAGAAAAGGAACAAAGAATTCAGAAGATAACTTTTTATTGGACCTTTACT
TGCATTTATCCATGACTtttgattttagaaatttttttaactgatcTGTA
ACATTTATTTAATCAAAATTGATCATTAACCGAAAAACTAGTTCTTAC Run BLAST on NCBI protein sequence of TCONS_00058698-protein >TCONS_00058698-protein ID=TCONS_00058698-protein|Name=TCONS_00058698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MMYRTLEAIALISILSICNSQTIPTIAERNAAVQVIKDIINSHKEPIGDD
DPPTKFRHPFRAGFVRLAFHDCVHGSGYTTKACDGCINHANPENAGLKRY
TDELDAAYADVSNGVATSMTNADFYTLAGVVALDEAAEPGATIPQQFNGL
EILKFGRKDPDDCATDVDDEDDFLSPHIGRFQGNNGIEKFFDRRFGFSLQ
DSVAILGAHTLGKAHFENSKFEGMWTTAVNNNGAQSDFLNNRYYRHIAGD
WTQVAAQGPGGASGNMQWKRTSGGGIRLMLNVDMAIAFDLHNNNTENPFQ
NEPQGQVNTCVIDVEEDEVGSKKPGNQTCEAVAPNICCPRSTTNEGGEDE
ETNYFFRYATNNQRWISEFKTAYFKMIFNNEVGLSAATP Run BLAST on NCBI transcript from alignment at scaffold_313:188255..192160+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058698 ID=TCONS_00058698|Name=TCONS_00058698|organism=Clytia hemisphaerica|type=transcript|length=3906bp|location=Sequence derived from alignment at scaffold_313:188255..192160+ (Clytia hemisphaerica)
aaaaatctcCATTGCACTTTGAAAACAAGTATAAATAGTTTGGCTTTCTG
GAACGGTATCATAAAACAGAAAGACACTGCAGATGCTTCAAAATGATGTA
TCGAACTTTAGAAGCCATAGCATTGATAAGTATTTTGTCGATCTGTAACA
GCCAAACAATACCAACAATTGCAGAGCGAAATGCAGCTGTTCAGGTTATC
AAAGATATCATTAATAGTCACAAGGAGCCGATAGGGGACGATGATCCACC
GACGAAGTTTAGACATCCGTTTCGGGCTGGATTTGTACGGCTAGCGTTTC
ACGATTGTGTTCACGGCTCAGGATACACGACAAAAGCATGTGACGGATGT
ATCAATCATGCTAACCCAGAAAATGCCGGGTTGAAACGATATACAGATGA
ACTTGATGCAGCATACGCTGACGTTAGTAATGGTGTAGCTACAAGCATGA
CTAATGCCGACTTCTACACATTAGCAGGTAactgttttttcttttcagtc
GACGAtctaatgaaaatgaaaaactttatcAATAAATTCCAGACATTGAG
TATAAAtttaatgaatttaaaaaacttttctgtGTTCTATGTAGCCGTAT
CAAACTGTTAACTCTTTGTTACCTTGTTAacgtttcaatgaaattttcta
cGGAAGGTTTATATGTGTGTTTATGTGCTCGTAAAAATTAACTTAAAATA
TTGTCAACTTCAAGGATAAAATCACGGTAGCTCTTACAGAAGCAACTACT
CTTACTACTATTAGGCGGGGAAGGAAACGTACGGAAATATAAAACAAGCA
AACACTGAAATACACCGTCAATGCTGAcagcaaaaattgctaaaaccCAT
ATTTTCCTTCAAACACCGAACCACTGACGGGAAAAGGGCtaataccgtca
caccgtcaCTGAACGATAATCTTGCACAGGAGTTTAATAAATATCACCAT
GATAACGCttataaaatcatttttaaaaatcttgtttttatcTTTAATTT
GTATATTTATTTAAATAGGTGTTGTCGCCCTTGACGAGGCGGCTGAACCA
GGTGCAACTATTCCACAACAATTTAACGGATTGGAAATATTGAAATTTGG
TAGAAAAGACCCTGACGATTGCGCAACAGACGTAGACGACGAAGACGACT
TCTTATCGCCCCATATCGGTCGTTTCCAGGGAAATAATGGTATTGAGAAA
TTTTTCGACCGTAGATTTGGATTCAGTCTCCAAGATTCAGTCGCTATCTT
GGGTGCACATACGTTAGGTAAAGCTCATTTTgagaattcaaaatttgaag
gcATGTGGACCACAGCTGTTAATAACAATGGAGCACAATCCGATTTTCTC
AACAATCGTTATTACAGACATATTGCTGGTGATTGGACCCAAGTAGCTGC
ACAAGGTCCAGGAGGTAAACAATCAAATAAGATGtgttggagtttttaca
agatgcttaactgattggttatttttaaacaatagggatgacgcgttctt
tagaaaaagtaataaaatcgtttgtctcaacatttaacgaccaacagagt
catcaaagaacttgtaaaaactccagcttgacccaatCAAATGTAGTTTT
ATTGGTTATTTATTACCTTTGTATTTTTTGTAGCCTTTCAGTTTCTCAGC
TGTTTccatatcatattttcaaactgTCTGTTTGCTATTATTGGGGTCCA
AAGCAGTTTGCGTTAAATTTTGTGTGCGAATACgtgaatattttcttttt
ggtcCCATATTGAGCGTGTCCGTAAAATCATTAATCCTGTACCCTGTACC
TTAAGTAAAATCATCAAATCAtctctttaaaaattcaaagaaataaatga
TGAAGATCTTTATATAAATTCTGCTTCAATTCTTTCCGGAAGTCCGTTGC
TGCAGTACAGTTCGGCAAATTGCATAGATCCGCAACGTTGCAATACCTCG
CAACGTTGCGGTTTTTCGCAGTGTTTCCCCAGGGTTGCGCTGCTATTTTA
CGCAACGCTTCCAATTGAAGattatgattttaaaaattatgagcgcctac
caattttcttctaaacgcatgcaaaatcaggcaaaaactTGCTTTCTTGA
ACAAAGTAGCGCTTTTTTGAACGAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAATGCTAGggtgaaaagtttccttttgggttgttct
tcaaaatgcaCATTATTTTGGGACCCCGGTCCAGGCCCTGCGATGCCGAT
TTTGGTCCAAAGgtccatcttttattgtctctttgaagcgagcttcgttg
ccgcctgtatttcaaaattggtatgaaaaatccgacaatattccatcata
attttatttctttgaattatttaggtaaaaggattgatagagcttgaaca
ttactcgtatttcacaaaaacattattttcgaatttttctacaagtttgc
aatatattttatcaacatttttcaactctgaaatgcagagttttaactgc
gtgtatacttttaaatcccttttgtcactccaataattttttttatgact
tgaaaaaaatagcttgcgaAAGTTGAGAGCCtatgtcataagaatatcaa
aattagaatgtgacactctctaaaattattcgacacttttaagtcaaaat
ttagaaatattagtcggaattttgacaagctgacgatgattttgcctctg
ttatcttttgttataatatagataaaagacttgagaagagtagaacaaca
gagacttttgtcgaagctttgacgttgttagcaaggtattcccaagtggt
atatcatcaaaatctattattTTATTCTAtacttttaacgaggcggcaac
gaagctagcactgttatcttcaaaaagacaaagaagatggatgtccagtc
gtttatatgttcatggtgtGAGGAATAAACTTGAGATACACTTTAGCCTA
GGACAAAGTACTTAAAACAGTGGAGTCtgtttaactcgaatgtctccttt
tctcgtcccttcagttaacaatgccttataaaccttattcAATAACTCTT
AACTCGTACAAATTTGTGCTCCTCGTGCGTGTTGGAGTTACTGAGACTCA
AAACTGTATTCATAATTATCGTTACCCTCAGGTGCAAGTGGAAACATGCA
ATGGAAACGTACGAGTGGTGGTGGAATCCGTTTAATGTTGAATGTTGACA
TGGCGATTGCTTTCGATTTGCACAATAATAATACGGAGAATCCATTTCAG
AACGAGCCACAAGGACAGGTCAACACGTGTGTAATCGATGTCGAAGAGGA
CGAAGTTGGGAGCAAAAAACCTGGAAACCAAACATGTGAAGCAGTTGCAC
CCAACATATGTTGTCCAAGATCAACCACAAACGAGGGAGGCGAAGATGAA
GAAACGAATTATTTCTTCAGATATGCCACTAATAATCAAAGATGGATAAG
TGAATTCAAAACTGCCtacttcaaaatgattttcaacAATGAAGTTGGAT
TATCAGCAGCTACACCATAATCGAGGAACCATATGAATGGCTATcataaa
gtttttataaaaacacaccTTTAAAGACTAACTCCAAAAAGAATCGACAT
CACATCGAAAGAAAAGGAACAAAGAATTCAGAAGATAACTTTTTATTGGA
CCTTTACTTGCATTTATCCATGACTtttgattttagaaatttttttaact
gatcTGTAACATTTATTTAATCAAAATTGATCATTAACCGAAAAACTAGT
TCTTAC Coding sequence (CDS) from alignment at scaffold_313:188255..192160+ >TCONS_00058698 ID=TCONS_00058698|Name=TCONS_00058698|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_313:188255..192160+ (Clytia hemisphaerica)
ATGATGTATCGAACTTTAGAAGCCATAGCATTGATAAGTATTTTGTCGAT
CTGTAACAGCCAAACAATACCAACAATTGCAGAGCGAAATGCAGCTGTTC
AGGTTATCAAAGATATCATTAATAGTCACAAGGAGCCGATAGGGGACGAT
GATCCACCGACGAAGTTTAGACATCCGTTTCGGGCTGGATTTGTACGGCT
AGCGTTTCACGATTGTGTTCACGGCTCAGGATACACGACAAAAGCATGTG
ACGGATGTATCAATCATGCTAACCCAGAAAATGCCGGGTTGAAACGATAT
ACAGATGAACTTGATGCAGCATACGCTGACGTTAGTAATGGTGTAGCTAC
AAGCATGACTAATGCCGACTTCTACACATTAGCAGGTGTTGTCGCCCTTG
ACGAGGCGGCTGAACCAGGTGCAACTATTCCACAACAATTTAACGGATTG
GAAATATTGAAATTTGGTAGAAAAGACCCTGACGATTGCGCAACAGACGT
AGACGACGAAGACGACTTCTTATCGCCCCATATCGGTCGTTTCCAGGGAA
ATAATGGTATTGAGAAATTTTTCGACCGTAGATTTGGATTCAGTCTCCAA
GATTCAGTCGCTATCTTGGGTGCACATACGTTAGGTAAAGCTCATTTTga
gaattcaaaatttgaaggcATGTGGACCACAGCTGTTAATAACAATGGAG
CACAATCCGATTTTCTCAACAATCGTTATTACAGACATATTGCTGGTGAT
TGGACCCAAGTAGCTGCACAAGGTCCAGGAGGTGCAAGTGGAAACATGCA
ATGGAAACGTACGAGTGGTGGTGGAATCCGTTTAATGTTGAATGTTGACA
TGGCGATTGCTTTCGATTTGCACAATAATAATACGGAGAATCCATTTCAG
AACGAGCCACAAGGACAGGTCAACACGTGTGTAATCGATGTCGAAGAGGA
CGAAGTTGGGAGCAAAAAACCTGGAAACCAAACATGTGAAGCAGTTGCAC
CCAACATATGTTGTCCAAGATCAACCACAAACGAGGGAGGCGAAGATGAA
GAAACGAATTATTTCTTCAGATATGCCACTAATAATCAAAGATGGATAAG
TGAATTCAAAACTGCCtacttcaaaatgattttcaacAATGAAGTTGGAT
TATCAGCAGCTACACCATAAATGATGTATCGAACTTTAGAAGCCATAGCA
TTGATAAGTATTTTGTCGATCTGTAACAGCCAAACAATACCAACAATTGC
AGAGCGAAATGCAGCTGTTCAGGTTATCAAAGATATCATTAATAGTCACA
AGGAGCCGATAGGGGACGATGATCCACCGACGAAGTTTAGACATCCGTTT
CGGGCTGGATTTGTACGGCTAGCGTTTCACGATTGTGTTCACGGCTCAGG
ATACACGACAAAAGCATGTGACGGATGTATCAATCATGCTAACCCAGAAA
ATGCCGGGTTGAAACGATATACAGATGAACTTGATGCAGCATACGCTGAC
GTTAGTAATGGTGTAGCTACAAGCATGACTAATGCCGACTTCTACACATT
AGCAGGTGTTGTCGCCCTTGACGAGGCGGCTGAACCAGGTGCAACTATTC
CACAACAATTTAACGGATTGGAAATATTGAAATTTGGTAGAAAAGACCCT
GACGATTGCGCAACAGACGTAGACGACGAAGACGACTTCTTATCGCCCCA
TATCGGTCGTTTCCAGGGAAATAATGGTATTGAGAAATTTTTCGACCGTA
GATTTGGATTCAGTCTCCAAGATTCAGTCGCTATCTTGGGTGCACATACG
TTAGGTAAAGCTCATTTTgagaattcaaaatttgaaggcATGTGGACCAC
AGCTGTTAATAACAATGGAGCACAATCCGATTTTCTCAACAATCGTTATT
ACAGACATATTGCTGGTGATTGGACCCAAGTAGCTGCACAAGGTCCAGGA
GGTGCAAGTGGAAACATGCAATGGAAACGTACGAGTGGTGGTGGAATCCG
TTTAATGTTGAATGTTGACATGGCGATTGCTTTCGATTTGCACAATAATA
ATACGGAGAATCCATTTCAGAACGAGCCACAAGGACAGGTCAACACGTGT
GTAATCGATGTCGAAGAGGACGAAGTTGGGAGCAAAAAACCTGGAAACCA
AACATGTGAAGCAGTTGCACCCAACATATGTTGTCCAAGATCAACCACAA
ACGAGGGAGGCGAAGATGAAGAAACGAATTATTTCTTCAGATATGCCACT
AATAATCAAAGATGGATAAGTGAATTCAAAACTGCCtacttcaaaatgat
tttcaacAATGAAGTTGGATTATCAGCAGCTACACCATAAATGATGTATC
GAACTTTAGAAGCCATAGCATTGATAAGTATTTTGTCGATCTGTAACAGC
CAAACAATACCAACAATTGCAGAGCGAAATGCAGCTGTTCAGGTTATCAA
AGATATCATTAATAGTCACAAGGAGCCGATAGGGGACGATGATCCACCGA
CGAAGTTTAGACATCCGTTTCGGGCTGGATTTGTACGGCTAGCGTTTCAC
GATTGTGTTCACGGCTCAGGATACACGACAAAAGCATGTGACGGATGTAT
CAATCATGCTAACCCAGAAAATGCCGGGTTGAAACGATATACAGATGAAC
TTGATGCAGCATACGCTGACGTTAGTAATGGTGTAGCTACAAGCATGACT
AATGCCGACTTCTACACATTAGCAGGTGTTGTCGCCCTTGACGAGGCGGC
TGAACCAGGTGCAACTATTCCACAACAATTTAACGGATTGGAAATATTGA
AATTTGGTAGAAAAGACCCTGACGATTGCGCAACAGACGTAGACGACGAA
GACGACTTCTTATCGCCCCATATCGGTCGTTTCCAGGGAAATAATGGTAT
TGAGAAATTTTTCGACCGTAGATTTGGATTCAGTCTCCAAGATTCAGTCG
CTATCTTGGGTGCACATACGTTAGGTAAAGCTCATTTTgagaattcaaaa
tttgaaggcATGTGGACCACAGCTGTTAATAACAATGGAGCACAATCCGA
TTTTCTCAACAATCGTTATTACAGACATATTGCTGGTGATTGGACCCAAG
TAGCTGCACAAGGTCCAGGAGGTGCAAGTGGAAACATGCAATGGAAACGT
ACGAGTGGTGGTGGAATCCGTTTAATGTTGAATGTTGACATGGCGATTGC
TTTCGATTTGCACAATAATAATACGGAGAATCCATTTCAGAACGAGCCAC
AAGGACAGGTCAACACGTGTGTAATCGATGTCGAAGAGGACGAAGTTGGG
AGCAAAAAACCTGGAAACCAAACATGTGAAGCAGTTGCACCCAACATATG
TTGTCCAAGATCAACCACAAACGAGGGAGGCGAAGATGAAGAAACGAATT
ATTTCTTCAGATATGCCACTAATAATCAAAGATGGATAAGTGAATTCAAA
ACTGCCtacttcaaaatgattttcaacAATGAAGTTGGATTATCAGCAGC
TACACCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058698-exon-scaffold_313-1491911889:188255..188731 | TCONS_00058698-exon-scaffold_313-1491911889:188255..188731 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1510915933:188255..188731 | TCONS_00058698-exon-scaffold_313-1510915933:188255..188731 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1575043694:188255..188731 | TCONS_00058698-exon-scaffold_313-1575043694:188255..188731 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1491911889:189273..189668 | TCONS_00058698-exon-scaffold_313-1491911889:189273..189668 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1510915933:189273..189668 | TCONS_00058698-exon-scaffold_313-1510915933:189273..189668 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1575043694:189273..189668 | TCONS_00058698-exon-scaffold_313-1575043694:189273..189668 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1491911889:191536..192160 | TCONS_00058698-exon-scaffold_313-1491911889:191536..192160 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1510915933:191536..192160 | TCONS_00058698-exon-scaffold_313-1510915933:191536..192160 | Clytia hemisphaerica | exon |
| TCONS_00058698-exon-scaffold_313-1575043694:191536..192160 | TCONS_00058698-exon-scaffold_313-1575043694:191536..192160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:188255..192160 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002016 | Haem_peroxidase_pln/fun/bac |
| IPR010255 | Haem_peroxidase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0020037 | heme binding |
| GO:0004601 | peroxidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0006979 | response to oxidative stress |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006979 |
response to oxidative stress |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0004601 |
peroxidase activity |
Blast
The following BLAST results are available for this feature:
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