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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058744 ID=TCONS_00058744|Name=TCONS_00058744|organism=Clytia hemisphaerica|type=transcript|length=3025bpRun BLAST on NCBI protein sequence of TCONS_00058744-protein >TCONS_00058744-protein ID=TCONS_00058744-protein|Name=TCONS_00058744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp MADETIPLKDTASALKRLRGSGENKSCFDCRAANPTWASITYGVFLCIDCRun BLAST on NCBI transcript from alignment at scaffold_313:201517..240536- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058744 ID=TCONS_00058744|Name=TCONS_00058744|organism=Clytia hemisphaerica|type=transcript|length=39020bp|location=Sequence derived from alignment at scaffold_313:201517..240536- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_313:201517..240536- >TCONS_00058744 ID=TCONS_00058744|Name=TCONS_00058744|organism=Clytia hemisphaerica|type=CDS|length=30039bp|location=Sequence derived from alignment at scaffold_313:201517..240536- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058744 vs. Swiss-Prot (Human)
Match: ARFG2 (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 1.047e-73 Identity = 204/541 (37.71%), Postives = 271/541 (50.09%), Query Frame = 2
Query: 395 LKRLRGSGENKSCFDCRAANPTWASITYGVFLCIDCSAVHRSLGVHLTFIRSTQLDGKWTWLQLRHMQCGGNAKANAFFRQHNLTTSDAGVKYKSRVASMYRDKLSQLAQKAMKEYGTSTLNIDTHAHGPT-TPEQKEIDFFQDIETTYTAVPASDSPX------------XXXXXXXXXXXDPNLDVGHMSTSPPKKEVRQSTIXXXXXXXXXXXXXXXXXXXXXXXXXXXNFSAIETEAQEMDKMKEQTSIATATPTFDEMSDKKSPSTPEDVPXXXXXXXXXXXXXREEEKLKNSDPKKAAQLERLGMGFGNRTNISHSMADSMQSVEQVRPDNETRKKDYYRSNSPTGDGFFDSFDRYGSDNSRSLTEEPPSY-DNRFS---------SKSGGWGLEDMSNSNKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADFQKKYSGAKGISSDQLFG--TGSSDSTNDRLNQYSGSQAISSADLFGDGRSNGASGR----------TVDYQNLKDSVSNVTGKLSSMASGVIGSLQTRY 1912
KRLR NK+CFDC A NP+WASITYGVFLCIDCS VHRSLGVHL+FIRST+LD W W QLR MQ GGNA A AFFRQH T +DA KY SR A MYR+K+ QL A+ +GT + + P +PE+K+ DFF T +T PA D+P+ + PN D+ + TSP +S+I G+K K GLGAKKG + +FS IE +AQ +K++EQ + + M + E K+EE+KL+N + KK Q ERLGMG +R+++SHS+ MQ +EQ P + + D FD G + PP Y DN FS WG++ + K + R++ + S ++ ++K++GAK ISSD FG + RL Q SGS AISS+DLFGD +GA G T D K V +V GK++ +A+GV+ SLQ RY
Sbjct: 14 FKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWIDNMSSAVPNHSPEKKDSDFF----TEHTQPPAWDAPATEPSGTQQPAPSTESSGLAQPEHGPNTDL--LGTSPKASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSSQSFSEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQE----------LQIDRKKEEKKLQNLEGKKREQAERLGMGLVSRSSVSHSVLSEMQVIEQETPVSAKSSRSQ-----------LDLFDDVG-----TFASGPPKYKDNPFSLGESFGSRWDTDAAWGMDRV--EEKEPEVTISSIRPISERATNRREVESRSSGLESSEARQKFAGAKAISSDMFFGREVDAEYEARSRLQQLSGSSAISSSDLFGD--MDGAHGAGSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRY 518 The following BLAST results are available for this feature:
BLAST of TCONS_00058744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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