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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058792 ID=TCONS_00058792|Name=TCONS_00058792|organism=Clytia hemisphaerica|type=transcript|length=1427bp
tttaaatttcattttaatctGAATTTTTATATACTTTGATCAAAAGATTT
GACAATCTCAACTTGATGGTAGTCAAGTTCAAATGATTGAGAGAATAAAA
TGGAGAGACTTATCTTTGAAATTGATGATGAGTATGCCTTTGTTAAAGAA
AGTGAAGAGGTGAGCGCAATCAAAGAAGCCGTGGAAAATTTCATGAAGCA
GATTGTAGAAGAGGTACAAAAGGAAGATGAACGTTTTGCAATAGATTTGA
TTCAAAGTGGAGGGACATATGAAAATACAAAAGTCATACAACAagatgaa
tttgattttcttgcTTCATTAAAAGTTTTCCAAAAAGCCCCTGAGGGCGA
CATTGATTTTCTTGTCGTACCAAAATCAAATGTTCATGCGTCAATCAAAT
TGtgtaatgaaaaatttgaaagtgtTTGGTCAGATATGATAATAATTGAA
GGCGATGTTAAATGGCTTGATAGCACAAAATTAAAACAAAGGTTTAACAA
TCTCGTCTTTAGAGTTGTTGGACTTGTGACATCTGTAGAGAATCTGAAAT
TTATAACAACACAAACTAAAAGCTGGAGTAAAAGCAAATTACTGTCTGGT
TGTGTTACCTTTCAGCCTCCAGaggtttttacttttctttggaaagataa
tttagaGATAAGTGTAGATCTGGTACCCTTTGTTAATTGTTCAAATAGTA
ACTTATCTGGCTATTTAAAAGATCTTGTCACAGAAACAAGCAATATACAA
TCCAACTTTTTGATTGATAATCTGGGATTAGTTGGACGAGCAGATTTGTT
TTGGCGGTTATCATACTCACAagcagaaacagctattttcaaatattttg
caaaAGAATTTGAGTTTGTCTTGGTACATTATCGAGTTTTAAAGTATTTA
AACGAGACTCACTTTATCACGAAGAACAATTTCCAGATTCATCTTTGCAG
TActtatgttttaaaaaatgcttTATTGCATCAATGGTATCAAAACAGAT
TAACAGATGACATTCAAAAGACTCTCATTCATAAAACTCTGAACTATATG
ATAGAGTGTTATGCTAAGAGTCACTTGGCAACATTTTTCAATTCCAACAC
TAATATACTTAAAGATAGTGACTATTCTTTCAAGATCAATGCAATTAAGG
AATGTTTAATACAACTTGAGAATGCTACTTCACTTGATGATTTTGTTAAG
AGCAGAGTCGTTATACAAGAGAAACAAGGGAAATCGTTGAGAgacagaaa
aataaagaaagtatAAGTAGATTAAATTTTGTGTGGAgtaatttttgcga
ttttgtcTTGGCTCTTTTATGGAAATTAAGTTCTCTCGAAAAATCAAAAC
CCTTTGGAAAATAAAATGAGTTAggtgaaaaagaggctgattTGCAAACT
TTAATCCATACtacttttttaaatctt Run BLAST on NCBI protein sequence of TCONS_00058792-protein >TCONS_00058792-protein ID=TCONS_00058792-protein|Name=TCONS_00058792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MERLIFEIDDEYAFVKESEEVSAIKEAVENFMKQIVEEVQKEDERFAIDL
IQSGGTYENTKVIQQDEFDFLASLKVFQKAPEGDIDFLVVPKSNVHASIK
LCNEKFESVWSDMIIIEGDVKWLDSTKLKQRFNNLVFRVVGLVTSVENLK
FITTQTKSWSKSKLLSGCVTFQPPEVFTFLWKDNLEISVDLVPFVNCSNS
NLSGYLKDLVTETSNIQSNFLIDNLGLVGRADLFWRLSYSQAETAIFKYF
AKEFEFVLVHYRVLKYLNETHFITKNNFQIHLCSTYVLKNALLHQWYQNR
LTDDIQKTLIHKTLNYMIECYAKSHLATFFNSNTNILKDSDYSFKINAIK
ECLIQLENATSLDDFVKSRVVIQEKQGKSLRDRKIKKV Run BLAST on NCBI transcript from alignment at scaffold_313:284861..286287 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058792 ID=TCONS_00058792|Name=TCONS_00058792|organism=Clytia hemisphaerica|type=transcript|length=1427bp|location=Sequence derived from alignment at scaffold_313:284861..286287 (Clytia hemisphaerica)
aagatttaaaaaagtaGTATGGATTAAAGTTTGCAaatcagcctcttttt
caccTAACTCATTTTATTTTCCAAAGGGTTTTGATTTTTCGAGAGAACTT
AATTTCCATAAAAGAGCCAAgacaaaatcgcaaaaattacTCCACACAAA
ATTTAATCTACTTatactttctttatttttctgtcTCTCAACGATTTCCC
TTGTTTCTCTTGTATAACGACTCTGCTCTTAACAAAATCATCAAGTGAAG
TAGCATTCTCAAGTTGTATTAAACATTCCTTAATTGCATTGATCTTGAAA
GAATAGTCACTATCTTTAAGTATATTAGTGTTGGAATTGAAAAATGTTGC
CAAGTGACTCTTAGCATAACACTCTATCATATAGTTCAGAGTTTTATGAA
TGAGAGTCTTTTGAATGTCATCTGTTAATCTGTTTTGATACCATTGATGC
AATAaagcattttttaaaacataagTACTGCAAAGATGAATCTGGAAATT
GTTCTTCGTGATAAAGTGAGTCTCGTTTAAATACTTTAAAACTCGATAAT
GTACCAAGACAAACTCAAATTCTtttgcaaaatatttgaaaatagctgtt
tctgctTGTGAGTATGATAACCGCCAAAACAAATCTGCTCGTCCAACTAA
TCCCAGATTATCAATCAAAAAGTTGGATTGTATATTGCTTGTTTCTGTGA
CAAGATCTTTTAAATAGCCAGATAAGTTACTATTTGAACAATTAACAAAG
GGTACCAGATCTACACTTATCtctaaattatctttccaaagaaaagtaaa
aacctCTGGAGGCTGAAAGGTAACACAACCAGACAGTAATTTGCTTTTAC
TCCAGCTTTTAGTTTGTGTTGTTATAAATTTCAGATTCTCTACAGATGTC
ACAAGTCCAACAACTCTAAAGACGAGATTGTTAAACCTTTGTTTTAATTT
TGTGCTATCAAGCCATTTAACATCGCCTTCAATTATTATCATATCTGACC
AAacactttcaaatttttcattacaCAATTTGATTGACGCATGAACATTT
GATTTTGGTACGACAAGAAAATCAATGTCGCCCTCAGGGGCTTTTTGGAA
AACTTTTAATGAAgcaagaaaatcaaattcatctTGTTGTATGACTTTTG
TATTTTCATATGTCCCTCCACTTTGAATCAAATCTATTGCAAAACGTTCA
TCTTCCTTTTGTACCTCTTCTACAATCTGCTTCATGAAATTTTCCACGGC
TTCTTTGATTGCGCTCACCTCTTCACTTTCTTTAACAAAGGCATACTCAT
CATCAATTTCAAAGATAAGTCTCTCCATTTTATTCTCTCAATCATTTGAA
CTTGACTACCATCAAGTTGAGATTGTCAAATCTTTTGATCAAAGTATATA
AAAATTCagattaaaatgaaatttaaa Coding sequence (CDS) from alignment at scaffold_313:284861..286287 >TCONS_00058792 ID=TCONS_00058792|Name=TCONS_00058792|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_313:284861..286287 (Clytia hemisphaerica)
TTatactttctttatttttctgtcTCTCAACGATTTCCCTTGTTTCTCTT
GTATAACGACTCTGCTCTTAACAAAATCATCAAGTGAAGTAGCATTCTCA
AGTTGTATTAAACATTCCTTAATTGCATTGATCTTGAAAGAATAGTCACT
ATCTTTAAGTATATTAGTGTTGGAATTGAAAAATGTTGCCAAGTGACTCT
TAGCATAACACTCTATCATATAGTTCAGAGTTTTATGAATGAGAGTCTTT
TGAATGTCATCTGTTAATCTGTTTTGATACCATTGATGCAATAaagcatt
ttttaaaacataagTACTGCAAAGATGAATCTGGAAATTGTTCTTCGTGA
TAAAGTGAGTCTCGTTTAAATACTTTAAAACTCGATAATGTACCAAGACA
AACTCAAATTCTtttgcaaaatatttgaaaatagctgtttctgctTGTGA
GTATGATAACCGCCAAAACAAATCTGCTCGTCCAACTAATCCCAGATTAT
CAATCAAAAAGTTGGATTGTATATTGCTTGTTTCTGTGACAAGATCTTTT
AAATAGCCAGATAAGTTACTATTTGAACAATTAACAAAGGGTACCAGATC
TACACTTATCtctaaattatctttccaaagaaaagtaaaaacctCTGGAG
GCTGAAAGGTAACACAACCAGACAGTAATTTGCTTTTACTCCAGCTTTTA
GTTTGTGTTGTTATAAATTTCAGATTCTCTACAGATGTCACAAGTCCAAC
AACTCTAAAGACGAGATTGTTAAACCTTTGTTTTAATTTTGTGCTATCAA
GCCATTTAACATCGCCTTCAATTATTATCATATCTGACCAAacactttca
aatttttcattacaCAATTTGATTGACGCATGAACATTTGATTTTGGTAC
GACAAGAAAATCAATGTCGCCCTCAGGGGCTTTTTGGAAAACTTTTAATG
AAgcaagaaaatcaaattcatctTGTTGTATGACTTTTGTATTTTCATAT
GTCCCTCCACTTTGAATCAAATCTATTGCAAAACGTTCATCTTCCTTTTG
TACCTCTTCTACAATCTGCTTCATGAAATTTTCCACGGCTTCTTTGATTG
CGCTCACCTCTTCACTTTCTTTAACAAAGGCATACTCATCATCAATTTCA
AAGATAAGTCTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058792-exon-scaffold_313-1491911889:284861..286287 | TCONS_00058792-exon-scaffold_313-1491911889:284861..286287 | Clytia hemisphaerica | exon |
| TCONS_00058792-exon-scaffold_313-1510915933:284861..286287 | TCONS_00058792-exon-scaffold_313-1510915933:284861..286287 | Clytia hemisphaerica | exon |
| TCONS_00058792-exon-scaffold_313-1575043694:284861..286287 | TCONS_00058792-exon-scaffold_313-1575043694:284861..286287 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:284861..286287 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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