|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058770 ID=TCONS_00058770|Name=TCONS_00058770|organism=Clytia hemisphaerica|type=transcript|length=583bp
AACTTTAGGAAAAGAATTTACTCTAGGAAACTTCGAATTCACAGATATCA
CTATTTCTCTTGCTGCCTCTAGCGAGTTAGATTAGAGGTCAGTGTTgatc
tgaagaagaaaaatggcTGCGCTTCGATTGGCATCAATTTCCAAACAACT
GAGAGAAGTTAGAATCCACCTCTGCCAAACATCTTCTTCAAGTTTGGGAG
TTAGaAACTTCATTGAGAATCACTATGTCAGCTTAAAGAAAGAGAATCCT
GATATGCCATTCTTAGTTCGTGAATGCAGTGGAATAGAGCCAAAGATGAC
TGCTAGATTTGATTTCGGTTTGGAGAAGAGTGTTTCATTGAGCGATCAAG
ATTCATCCCAAGTTTTAAAATCTCTAGAAAATCTGGCGAAGAATGCTTAA
GTCTtagtttttgtatatttttttagaattcCATTGTGTAAATATAGTGT
TTACAAATTATCGTAAAAATTAAAAGAAGTTGTTGaatattttcaatctt
cataTTAAGAAGTCAGGTTTGATTCAATTGTGTAGGACAGTAGTTGTCTC
AAACCCGTTGATTTGGATAATGTGGCTTAAAAA Run BLAST on NCBI transcript from alignment at scaffold_313:585458..590445- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058770 ID=TCONS_00058770|Name=TCONS_00058770|organism=Clytia hemisphaerica|type=transcript|length=4988bp|location=Sequence derived from alignment at scaffold_313:585458..590445- (Clytia hemisphaerica)
AACTTTAGGAAAAGAATTTACTCTAGGAAACTTCGAATTCACAGATATCA
CTATTTCTCTTGCTGCCTCTAGCGAGTTAGATTAGAGGTCAGTGTTGATC
TGAAGAAGAAAAATGGCTGCGCTTCGATTGGCATCAATTTCCAAACAACT
GAGAGAAGTTAGAATCCACCTCTGCCAAACATCTTCTTCAAGTTTGGGAG
TTAGGTAAGATTGATAATATTAGAATATATATTTTTCGTAATAAATCAAT
AAATGCCGTGTGATTGTTTAAAAAGAAGTATCAAATGAAGGTAAAGCGCT
TTCATCCAATAATCAGAAATGATTCTTTGAAGAAATAACGCTTGCATCTA
ATTCTTGCTTTCGTTTGAGAACTAAAGAAAAGAAAAATTTCATTGTTTCA
TTGTTTTAAGACTGAAGTTTTTAATGGGCCATGCCAGAATTTGTCTGTAA
CAGGGGGGCGGACGACACACCAGGATTTCCGAGGGCAAAAAAGGATACGA
TACCAGGCCATTTTTTATGCCCTTTTTTTTATACCCTTCATCAGACGTTG
CCCCTCCTGAAATCACTAAAATTTTGGTAAAAGCAGCCTTTTTAGCGGAA
AAACACAAGAAAAAGTGCCCTTTTGTGGCGACCAATGGACGCTGTCCTGC
CTTTCTAAAATATGGCCTGGATACGTAGCTCCGCTCGCAGCTCTACTCTT
CCATTTTTGTTTGATTTAACTTTGTATTTTAATGACCAGAACACAGTCAA
AAATAAAGGGGGGTTTTGTGACATTTCTACCTTCTGTCATATCTGATACC
ATATCTGGTGGAATTTTGAGGTTACCATGTCAAAACTTTGAAGAACTCAA
GTATAGAAATTTCTCGTTGTTTTAGAAGAAACACGAATTTAAGAGGTTAC
TTCAATCCTGAATAATACTTAGAAATATGATGTGGTTAAAGTGAGGTTAC
CCAAATGAGGTTACCTCATTCTAAAGCTTATAAATCAATACCTACTGAAG
CAAAATTGCTCAAAATTTAAATATGCCTCAAGTAGGCCTCATTCTAAGCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAAAACTAATTTGGATTTCTTATAAGCTGTATTTTTGGGGCTAAATTGA
GGTTACCAATTCACAATTTTCATAAACCCCTTTATCATCTAATTGGCTTC
AAAAAAAAGTGGATATTTTGTTGGCAATTGGTTTGATAAAGGTAATAGAA
GCAAAATTCATCATGGAAAATTATGCCTGATAAACAAAAAGGTTGTATAT
TTAAGGTTACTCTTGTAGAAAAGTACCATTTTCACTGTAATCCTGTGTTA
AGCTAAAGCTAATGAGGCTATTAATCAAAGATCAATATTATTTGTTTTGC
ATGACTATAACATCAAATCATAAACTAAATCACATCTCAAGATGGATTAT
TAGAAGTAGAAGAAATCAGAATCTTTAAAATTCAAATTTTGATGGGTTTT
TGAGATTACTACAATCCACCAAAAAGTAACCTCAAAAATCACACCAAATC
TTCAAATTTTCGCACTTTTTTTGACCAAGTGTTGCCATGTCAGTATAGAG
TATGCTCTCTAGTTTTTAGAGATTAAAATAGTTTTTACTAAAAGATGTGG
TGTTTCAAAGGTTACCCTATAAAAATGATGGTAACCTCAAAAATACCCCA
TAAAATCTTCCGAAAAATTTATGACAATAGGNNTTTTGTTTGATTTAACT
TTGTATTTTAATGACCAGCCAGGTCATTCATTTGAGGGCTATGCAAGTTT
CCCTCCACTGATGCAAGTTACCCGACTTCAGGGCACAAAATAGTATTATC
ATGAAAATTTTTAAATAATATGTCTTTGAAAGCAAGTGGAAAGCACATGG
TTAGATTTTGACGTTTTAGATAGTCATACGTGGATAAATTACCTTTATAT
TGATTTTTTCGATAATTTTTAGCATTTTTAAAACATTTTTTGTTTGAATT
ACTTTGATCAGAGCTGCCCCGTCACCCCGTGACCTGTAACCTGTGCTCTG
GACCTGTGCTCCGTGACCCATGTTTCGAACTAGCCGCTTATTGACTTAGT
TCCGCATATCAACCTACTACCTTCAGTCCAGAAAGCGTTATAGCATGCCA
ATTTGGGATAATGTCAATTTGAACAAAACATGTTTATAGGTGATATTTAA
TTTCCCGCTAGACACACCTTGTCTAGTTCCATTGTAGCAACTATCTGGTC
TTTAAAGTAATTATAAATGAAACCTTAAATTAACAAATTAAGCTGTTTAA
AAAAATCACTAACTACTTTACTCGGGTGAAACAAGGCATGTCCCAAATAT
ATTTTTCGTGACGCACACTGCTTCCCATTATTCATTAACTTTCATATATA
GCTAAAAAGAATCGTATCAACGAGAGGATTTCGAAAAGTGCTGGGTCAAA
AATTTACATTAAGCCAATCTTAAGATATTGGCCAAAAACTGATTTTGACG
TTATAAAATACATCGAAAAAACACGTCAAAAAGACAATTTTTTAAAATGA
CGTCATTATTGAAAAAGGCGATAATTCCGATTAATTTACTAAATCAAAGC
AAAATTTTGACTGGAGATGTAAATTAACGATTCTAAAATATTTCATGAAA
AAAATCTTGAAAATTCATGATGACGTCAGCATTTTTTGTCGTATTTTAAT
TTTTCCCGACAAATGACGTCATTCAAATTTTCTGAGAATTTTTAACAAAT
ATTTCAGAATCATTGGTTTACAACTCCAGTCAAAATTTGGTGTTAGTTGC
ATTAATAAAATTGAAGTTATCGCTGTTTTTCAATAATAACGTCATTTGAA
TCTTACTTATGACGTATTTTTTCGATGTATTTTATAACGTCAAAATCAAT
TTTTGACCGATATCTTGAGATTGGCTTAATGCAAATTTTTGACCCAGCAC
TTTTCGAAATCTGCTCGTTGATATGATTCTTTTGAGCTATATATGAACAT
TAAGGAATAATTGGACGCTGTGCGCGTCACGCAAAATATATTTGGGACAT
GCCTTGTTTCCCCCGAGTAACAACTTTGTAGACCAGATAGTTGTTATGGC
GTAATTAGACAAGGTATGTCGACATTACACAAATCTATGGTGTAATTAGT
TGTGCAATATATCGTCATGTGCAAAAGGAGTATTACACAACATGACATTT
TGCCTAGCAGAAGGTCTATATATGATTTTTTAAGAGAGTTGACCTTTTTG
ATTTCGAATAACCCCCATGCAATTGCAAGGATATCCCTGACTGACAATGC
TGTGCTCAGCGAATCATAAAAATATTGGATTTTATCTTTTTCAGAAACTT
CATTGAGAATCACTATGTCAGCTTAAAGAAAGAGAATCCTGATATGCCAT
TCTTAGTTCGTGAATGCAGTGGAATAGAGCCAAAGATGACTGCTAGATTT
GGTGAGACTTTTTCTACTACCACCGTTTGCTTGAATGAGTGTGCTTCTGC
AGCCAAATCAACTTCTTCACTTCTCTTCTCTACTTCTCTGCTACTCTGAA
TTTCAGTCATTCTTCTTTGTAGATGTTTTTTTTTCTTTTTTGAATTATGA
TAATTATCTTTGTTTTTAGGGATTTTTACGGTAATCTTTTTTGTGGTTAT
AATGGATTTCTCTGAAGATCTGACCTTGTATATCTAATATTTGAACTCTG
TGAAGGAGATATGCATTTATTAAAAGCAGAGAAGCAGAATTAAAGATCTA
AGAGACAGAGATTCTAGTTTGAAAAGCTGAGATGTAAATCTGAGAAGGAG
AGACACAGGGGTGAAACACTAAATGGTCGTTTGGCTGTAAAGGTACACTT
ATCTGCTTGGCCTTTTCTTCGAAAGAAATTGTTTAAAAGACAAATTTTTT
AGTGCAACTTTTGTTGTCTAAAGAATTACGAGGACCTCCACTCATCACTA
TCATTGAGTTTCAAGCCCGAAGGACTACAGGTGAAACTTCTAACCCTTCT
CAGGCAAGAGAAATTGAAGCCACTTGTTTCCCATTCAAAACGCGCATAGA
ACGCACAGAGATTGTATCTACAATCCTTCAAGAAATATTCGAGACAAAGG
GGAATTCCCGGTGTAATTTTGAACACCACAATTGATTTTTAAGCGCCTTA
AACTACAGTTGGAAAGTAGAGTTTTAACTCTGAGTTTTAACATGAGACTT
AAGACTTAGGAGGACCTTAGGATCTCAGGATTTAAAAGTNAATGCTGTGC
TCAGCGAATCATAAAAATATTGGATTTTATCTTTTTCAGAAACTTCATTG
AGAATCACTATGTCAGCTTAAAGAAAGAGAATCCTGATATGCCATTCTTA
GTTCGTGAATGCAGTGGAATAGAGCCAAAGATGACTGCTAGATTTGGTGA
GACTTTTTCTACTACCACCGTTTGCTTGAATGAGTGTGCTTCTGCAGCCA
AATCAACTTCTTCACTTCTCTTCTCTACTTCTCTGCTACTCTGAATTTCA
GTCATTCTTCTTTGTAGATGTTTTTTTTTCTTTTTTGAATTATGATAATT
ATCNAGTGCTAAAATAGCAATTCTCGCCCGAACTTTAAATTCTGAAAAAC
GTTAAAATACACTAAAATCTCAATATATTTCAAGGGAGATTGTAGCGGTT
CCTTTGTTTTGGAGGACTACATTTCATTTTTTCGCGATATATATTTATTG
AATTTTCTCTTTTCAGATTTCGGTTTGGAGAAGAGTGTTTCATTGAGCGA
TCAAGATTCATCCCAAGTTTTAAAATCTCTAGAAAATCTGGCGAAGAATG
CTTAAGTCTTAGTTTTTGTATATTTTTTTAGAATTCCATTGTGTAAATAT
AGTGTTTACAAATTATCGTAAAAATTAAAAGAAGTTGTTGAATATTTTCA
ATCTTCATATTAAGAAGTCAGGTTTGATTCAATTGTGTAGGACAGTAGTT
GTCTCAAACCCGTTGATTTGGATAATGTGGCTTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058770-exon-scaffold_313-1575043694:590242..590445 | TCONS_00058770-exon-scaffold_313-1575043694:590242..590445 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1575043694:587080..587101 | TCONS_00058770-exon-scaffold_313-1575043694:587080..587101 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1575043694:586050..586134 | TCONS_00058770-exon-scaffold_313-1575043694:586050..586134 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1575043694:585458..585729 | TCONS_00058770-exon-scaffold_313-1575043694:585458..585729 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1510915933:590242..590445 | TCONS_00058770-exon-scaffold_313-1510915933:590242..590445 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1510915933:587080..587101 | TCONS_00058770-exon-scaffold_313-1510915933:587080..587101 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1510915933:586050..586134 | TCONS_00058770-exon-scaffold_313-1510915933:586050..586134 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1510915933:585458..585729 | TCONS_00058770-exon-scaffold_313-1510915933:585458..585729 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1491911889:590242..590445 | TCONS_00058770-exon-scaffold_313-1491911889:590242..590445 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1491911889:587080..587101 | TCONS_00058770-exon-scaffold_313-1491911889:587080..587101 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1491911889:586050..586134 | TCONS_00058770-exon-scaffold_313-1491911889:586050..586134 | Clytia hemisphaerica | exon |
| TCONS_00058770-exon-scaffold_313-1491911889:585458..585729 | TCONS_00058770-exon-scaffold_313-1491911889:585458..585729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:585458..590445 - |
Blast
BLAST of TCONS_00058770 vs. Swiss-Prot (Human)
Match: NDUA2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 4.059e-23 Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query: 116 AALRLASISKQLREVRIHLCQTSSSSLGVRNFIENHYVSLKKENPDMPFLVRECSGIEPKMTARFDFGLEXXXXXXXXXXXXXXXXLENL 385
AA R LRE+RIHLCQ S S GVR+FIE YV LKK NPD+P L+RECS ++PK+ AR+ FG E +V L++ + QV ++LEN+
Sbjct: 5 AASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENV 94
The following BLAST results are available for this feature:
|
