TCONS_00058795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058795
Unique NameTCONS_00058795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058795 ID=TCONS_00058795|Name=TCONS_00058795|organism=Clytia hemisphaerica|type=transcript|length=393bp
CCTTGATCAAACTCAAAGCAACTAAAATGACGATCGTTATACTAGCAAGT
TACATGATTGTTTACGGTCCAGCTTGTTTTTATTACAGTTTGAAAGCGAT
CTGCTTAACCACATGTTTCCCACCCAACTACCACGACAGTCACATAGATT
TACAGCTTAGGTTCTGGTTCAAATATGCGACCCTTTCGTTTGCACCGATA
TGTCCTATTATTATATGCTGGAGACGTAAATTCAAGacatttcttataaa
gaagttTTCGGTATTGGATCCAGAGAAAGGGAAAGGACAGACGTTACCGC
AATACGCAAGAAATAcgataaatattaaaaaacaacAGCAGACTGGTGAT
ACAACGAGGAAGTAGAAATGTTCACAAATAATCTTGAAATTTC
Run BLAST on NCBI

protein sequence of TCONS_00058795-protein

>TCONS_00058795-protein ID=TCONS_00058795-protein|Name=TCONS_00058795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
LIKLKATKMTIVILASYMIVYGPACFYYSLKAICLTTCFPPNYHDSHIDL
QLRFWFKYATLSFAPICPIIICWRRKFKTFLIKKFSVLDPEKGKGQTLPQ
YARNTINIKKQQQTGDTTRK
Run BLAST on NCBI

transcript from alignment at scaffold_313:322486..322878

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058795 ID=TCONS_00058795|Name=TCONS_00058795|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at scaffold_313:322486..322878 (Clytia hemisphaerica)
GAAATTTCAAGATTATTTGTGAACATTTCTACTTCCTCGTTGTATCACCA
GTCTGCTgttgttttttaatatttatcgTATTTCTTGCGTATTGCGGTAA
CGTCTGTCCTTTCCCTTTCTCTGGATCCAATACCGAAaacttctttataa
gaaatgtCTTGAATTTACGTCTCCAGCATATAATAATAGGACATATCGGT
GCAAACGAAAGGGTCGCATATTTGAACCAGAACCTAAGCTGTAAATCTAT
GTGACTGTCGTGGTAGTTGGGTGGGAAACATGTGGTTAAGCAGATCGCTT
TCAAACTGTAATAAAAACAAGCTGGACCGTAAACAATCATGTAACTTGCT
AGTATAACGATCGTCATTTTAGTTGCTTTGAGTTTGATCAAGG

Coding sequence (CDS) from alignment at scaffold_313:322486..322878

>TCONS_00058795 ID=TCONS_00058795|Name=TCONS_00058795|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_313:322486..322878 (Clytia hemisphaerica)
CTACTTCCTCGTTGTATCACCAGTCTGCTgttgttttttaatatttatcg
TATTTCTTGCGTATTGCGGTAACGTCTGTCCTTTCCCTTTCTCTGGATCC
AATACCGAAaacttctttataagaaatgtCTTGAATTTACGTCTCCAGCA
TATAATAATAGGACATATCGGTGCAAACGAAAGGGTCGCATATTTGAACC
AGAACCTAAGCTGTAAATCTATGTGACTGTCGTGGTAGTTGGGTGGGAAA
CATGTGGTTAAGCAGATCGCTTTCAAACTGTAATAAAAACAAGCTGGACC
GTAAACAATCATGTAACTTGCTAGTATAACGATCGTCATTTTAGTTGCTT
TGAGTTTGATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037038XLOC_037038Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058795-proteinTCONS_00058795-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058795-exon-scaffold_313-1491911889:322486..322878TCONS_00058795-exon-scaffold_313-1491911889:322486..322878Clytia hemisphaericaexon
TCONS_00058795-exon-scaffold_313-1510915933:322486..322878TCONS_00058795-exon-scaffold_313-1510915933:322486..322878Clytia hemisphaericaexon
TCONS_00058795-exon-scaffold_313-1575043694:322486..322878TCONS_00058795-exon-scaffold_313-1575043694:322486..322878Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:322486..322878 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192814	0	1.30988	0.640758	0.52004	0	0	0	0	0	0	0	1.02588	0.266345	0	0.117495	0	0.593434	1.84469	3.86067	0.372847	0	0	1.00495	0.207016	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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