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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058750 ID=TCONS_00058750|Name=TCONS_00058750|organism=Clytia hemisphaerica|type=transcript|length=2799bpRun BLAST on NCBI protein sequence of TCONS_00058750-protein >TCONS_00058750-protein ID=TCONS_00058750-protein|Name=TCONS_00058750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp MSYPPAGGYGYPPQPAGYPQQQPAPYGQSAPYGQSAPYGQSAPYGQSAPYRun BLAST on NCBI transcript from alignment at scaffold_313:367369..374974- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058750 ID=TCONS_00058750|Name=TCONS_00058750|organism=Clytia hemisphaerica|type=transcript|length=7606bp|location=Sequence derived from alignment at scaffold_313:367369..374974- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_313:367369..374974- >TCONS_00058750 ID=TCONS_00058750|Name=TCONS_00058750|organism=Clytia hemisphaerica|type=CDS|length=23850bp|location=Sequence derived from alignment at scaffold_313:367369..374974- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058750 vs. Swiss-Prot (Human)
Match: ANXA7 (Annexin A7 OS=Homo sapiens GN=ANXA7 PE=1 SV=3) HSP 1 Score: 351.673 bits (901), Expect = 4.695e-110 Identity = 178/313 (56.87%), Postives = 234/313 (74.76%), Query Frame = 2
Query: 884 TQGTVKDHSPFNAQQDAEILRKAMKGFGTDEKAIVHXXXXXXXXXXXXXKLEFATMYGKDLIKELKSELSGNFEKAVLCFLMPPAEHDAYQMHIAMEGLGTDEKALIEILCSRTNLEIXXXXXXXXXXXXNDLEKELKSETSGHFKRLLVSLVQGSRLENEPINQQKAKEDANALYMAGEARWGTDESRFNAIMALRSNAQLRLTFEQYTHFSKRTIEKAIKSEMSGDLKDGMMAIVKCAKDKSAFFAEKLYYSMKGLGTDDTTLIRIMVSRSEVDMVQIKNAFKNMYGKTLASFINDDCSGDYKRLLVGICG 1822
TQGT++ + F+A +DAEILRKAMKGFGTDE+AIV ++++RSN QRQ+IK F T YGKDLIK+LKSELSGN E+ +L MPP +DA+ + AM+G GT E+ LIEILC+RTN EI+ Y+ + DLEK+++S+TSGHF+RLLVS+ QG+R EN+ IN Q A+EDA LY AGE R GTDES FN I+A RS QLR T E Y+ + R + ++ E SG ++ G+ I++CA ++ AFFAE+LYY+MKG GTDD+TL+RI+V+RSE+D+VQIK F MY KTL + I D SGDY+RLL+ I G
Sbjct: 175 TQGTIRPAANFDAIRDAEILRKAMKGFGTDEQAIVDVVANRSNDQRQKIKAAFKTSYGKDLIKDLKSELSGNMEELILALFMPPTYYDAWSLRKAMQGAGTQERVLIEILCTRTNQEIREIVRCYQSEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQSINHQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLRATMEAYSRMANRDLLSSVSREFSGYVESGLKTILQCALNRPAFFAERLYYAMKGAGTDDSTLVRIVVTRSEIDLVQIKQMFAQMYQKTLGTMIAGDTSGDYRRLLLAIVG 487 The following BLAST results are available for this feature:
BLAST of TCONS_00058750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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