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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058798 ID=TCONS_00058798|Name=TCONS_00058798|organism=Clytia hemisphaerica|type=transcript|length=1585bp
CTTCCAtattaaacaaagaaaaaaggatatttgatatttcaatgttttca
tcCAACGGGAACTACCTCTTAAACCATTGCCCATTTTCCCAAATTCAAgt
ctaattttttggaatttttaccTTTCAATAACAGAATATGCAAACTTCTT
CGGtcttaaaattgatttatttatttcatgGTATTTACATTTATTTACAA
CAATTGAAATAGACGAAAAGAAAGGGAAACCGCTACCGCTAACTAACAAT
TGAGGCCAAGGTATCGCGAGATGagatctcaaaaatatcttcaactaCTG
TAAAAGTAGAGTCTCTTTACCTATAAGGTAAAAATCACAATTGTCTGATA
ATCATATGTCAGTTTTAATGCATACGCAAAAGGTATATCGCTGTTTACAG
TATTTTCTTATAATCAAACATTGACGACAAGGAAGTAACTGTGAAACATC
TCTTTGAAGTCGAGCAAAACTAACtttatcaaccaacaaaacgGAAACGA
CATCCAAGCAAACACTTTTCAAAGAACTCATTCCGTCGAAAAAATTTCTT
CCGGTTGTAAGACAGGTGACTGCGGACATCTAAGGTACCGGCATTTCCCT
GGTTTATAATTATAGCTCCATTTTTGGCGGTCCGTTAAAAGGTAAAGGTT
GGGACAACTGTTTGTGTTGATTGGTAATTTCTCTTTGGGCGGTTTCAATA
AAAGTTTCGTTTCTTCACCGATCTGTTTGGGCGCTACGTATCTCAAAGTC
AAGGGCGGACGCCCTGGGTTTTCCTTATTCATGAATTCTTTAACTCTATC
ATGTATGATAAAACGTTTATTTTCTTCAACGCGTGAAGCGACGTGCGCAA
AAGAAGTGTGAAGTTCAGTTGTGGTCTTCGATCGGGAACGTTGACGTCGG
GACGCTTCTTCGTCAGCGATAACCGAACTTGATCGTTGTCGGCGTTGTGA
AATTCTCGGTAACGTCGAATGTTTACGAGAATGTTTTTCAGTTTCACCAT
CTGAAGTCTCGTTTGTTGTCGTTTGTTCTTCATCGCCACCGAGCATGAAA
CGAGCGGGTGATCGTTGCCGAGTGATTTCGGGCATGCGTGGAGCTCCTAA
AGAAGACATCCTGCGCGATGTTGATCTCGATACACGTTGACTTCTTCTAG
ATACAGTTATACTCTGTATTGTTGACCTCTTATTCGAAGCGTAGTTCCTT
ATAACTGGTAAAGTTTGCATTTTCTTGTTTATCAAATGACGAGATGATGA
AATAACAACTCTTTATTGTTATTGTCCCTCAATAACGCGCTGTTTCGTGA
AATAAGACACTCCAATACTCCACTCCAACAAATAACTTATATGCTCTCTA
GTATCTCACCAACAAAAACAGTGCCTACttcaaaaaaagtaaaaccttAT
CAGAAAGTCTTATCCCTAATGAAAGTGTTTCTCAGTTCACTTCTTAACAA
GCGCCTCTCGAGTGACTGTCACCCTCTTACATTTGCGAAAGACTTCTTTA
CAAACACACAGTATTTTTCACATCTATAATAAGAACCTCTATTTTTTGTG
AGAATTGATAGGGTCATATAGTGTTACAGTTACCA Run BLAST on NCBI protein sequence of TCONS_00058798-protein >TCONS_00058798-protein ID=TCONS_00058798-protein|Name=TCONS_00058798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MQTLPVIRNYASNKRSTIQSITVSRRSQRVSRSTSRRMSSLGAPRMPEIT
RQRSPARFMLGGDEEQTTTNETSDGETEKHSRKHSTLPRISQRRQRSSSV
IADEEASRRQRSRSKTTTELHTSFAHVASRVEENKRFIIHDRVKEFMNKE
NPGRPPLTLRYVAPKQIGEETKLLLKPPKEKLPINTNSCPNLYLLTDRQK
WSYNYKPGKCRYLRCPQSPVLQPEEIFSTE Run BLAST on NCBI transcript from alignment at scaffold_313:421945..423529 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058798 ID=TCONS_00058798|Name=TCONS_00058798|organism=Clytia hemisphaerica|type=transcript|length=1585bp|location=Sequence derived from alignment at scaffold_313:421945..423529 (Clytia hemisphaerica)
TGGTAACTGTAACACTATATGACCCTATCAATTCTCACAAAAAATAGAGG
TTCTTATTATAGATGTGAAAAATACTGTGTGTTTGTAAAGAAGTCTTTCG
CAAATGTAAGAGGGTGACAGTCACTCGAGAGGCGCTTGTTAAGAAGTGAA
CTGAGAAACACTTTCATTAGGGATAAGACTTTCTGATaaggttttacttt
ttttgaaGTAGGCACTGTTTTTGTTGGTGAGATACTAGAGAGCATATAAG
TTATTTGTTGGAGTGGAGTATTGGAGTGTCTTATTTCACGAAACAGCGCG
TTATTGAGGGACAATAACAATAAAGAGTTGTTATTTCATCATCTCGTCAT
TTGATAAACAAGAAAATGCAAACTTTACCAGTTATAAGGAACTACGCTTC
GAATAAGAGGTCAACAATACAGAGTATAACTGTATCTAGAAGAAGTCAAC
GTGTATCGAGATCAACATCGCGCAGGATGTCTTCTTTAGGAGCTCCACGC
ATGCCCGAAATCACTCGGCAACGATCACCCGCTCGTTTCATGCTCGGTGG
CGATGAAGAACAAACGACAACAAACGAGACTTCAGATGGTGAAACTGAAA
AACATTCTCGTAAACATTCGACGTTACCGAGAATTTCACAACGCCGACAA
CGATCAAGTTCGGTTATCGCTGACGAAGAAGCGTCCCGACGTCAACGTTC
CCGATCGAAGACCACAACTGAACTTCACACTTCTTTTGCGCACGTCGCTT
CACGCGTTGAAGAAAATAAACGTTTTATCATACATGATAGAGTTAAAGAA
TTCATGAATAAGGAAAACCCAGGGCGTCCGCCCTTGACTTTGAGATACGT
AGCGCCCAAACAGATCGGTGAAGAAACGAAACTTTTATTGAAACCGCCCA
AAGAGAAATTACCAATCAACACAAACAGTTGTCCCAACCTTTACCTTTTA
ACGGACCGCCAAAAATGGAGCTATAATTATAAACCAGGGAAATGCCGGTA
CCTTAGATGTCCGCAGTCACCTGTCTTACAACCGGAAGAAATTTTTTCGA
CGGAATGAGTTCTTTGAAAAGTGTTTGCTTGGATGTCGTTTCcgttttgt
tggttgataaaGTTAGTTTTGCTCGACTTCAAAGAGATGTTTCACAGTTA
CTTCCTTGTCGTCAATGTTTGATTATAAGAAAATACTGTAAACAGCGATA
TACCTTTTGCGTATGCATTAAAACTGACATATGATTATCAGACAATTGTG
ATTTTTACCTTATAGGTAAAGAGACTCTACTTTTACAGtagttgaagata
tttttgagatctCATCTCGCGATACCTTGGCCTCAATTGTTAGTTAGCGG
TAGCGGTTTCCCTTTCTTTTCGTCTATTTCAATTGTTGTAAATAAATGTA
AATACcatgaaataaataaatcaattttaagaCCGAAGAAGTTTGCATAT
TCTGTTATTGAAAggtaaaaattccaaaaaattagacTTGAATTTGGGAA
AATGGGCAATGGTTTAAGAGGTAGTTCCCGTTGgatgaaaacattgaaat
atcaaatatccttttttctttgtttaataTGGAAG Coding sequence (CDS) from alignment at scaffold_313:421945..423529 >TCONS_00058798 ID=TCONS_00058798|Name=TCONS_00058798|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_313:421945..423529 (Clytia hemisphaerica)
ATGCAAACTTTACCAGTTATAAGGAACTACGCTTCGAATAAGAGGTCAAC
AATACAGAGTATAACTGTATCTAGAAGAAGTCAACGTGTATCGAGATCAA
CATCGCGCAGGATGTCTTCTTTAGGAGCTCCACGCATGCCCGAAATCACT
CGGCAACGATCACCCGCTCGTTTCATGCTCGGTGGCGATGAAGAACAAAC
GACAACAAACGAGACTTCAGATGGTGAAACTGAAAAACATTCTCGTAAAC
ATTCGACGTTACCGAGAATTTCACAACGCCGACAACGATCAAGTTCGGTT
ATCGCTGACGAAGAAGCGTCCCGACGTCAACGTTCCCGATCGAAGACCAC
AACTGAACTTCACACTTCTTTTGCGCACGTCGCTTCACGCGTTGAAGAAA
ATAAACGTTTTATCATACATGATAGAGTTAAAGAATTCATGAATAAGGAA
AACCCAGGGCGTCCGCCCTTGACTTTGAGATACGTAGCGCCCAAACAGAT
CGGTGAAGAAACGAAACTTTTATTGAAACCGCCCAAAGAGAAATTACCAA
TCAACACAAACAGTTGTCCCAACCTTTACCTTTTAACGGACCGCCAAAAA
TGGAGCTATAATTATAAACCAGGGAAATGCCGGTACCTTAGATGTCCGCA
GTCACCTGTCTTACAACCGGAAGAAATTTTTTCGACGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058798-exon-scaffold_313-1491911889:421945..423529 | TCONS_00058798-exon-scaffold_313-1491911889:421945..423529 | Clytia hemisphaerica | exon |
| TCONS_00058798-exon-scaffold_313-1510915933:421945..423529 | TCONS_00058798-exon-scaffold_313-1510915933:421945..423529 | Clytia hemisphaerica | exon |
| TCONS_00058798-exon-scaffold_313-1575043694:421945..423529 | TCONS_00058798-exon-scaffold_313-1575043694:421945..423529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:421945..423529 . |
Blast
The following BLAST results are available for this feature:
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