|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058712 ID=TCONS_00058712|Name=TCONS_00058712|organism=Clytia hemisphaerica|type=transcript|length=1615bp
gccaaaaatcagaaaaaactaatgagccaatctcgagaaaagctggtaac
agacggacggacggacggacgaacggacggacggacggacggacgaacgg
acaaaggttaatttataggacctcaaGGTAGGTCCAACGATGATAAACAT
TTCTTATGGTAAGCACCCACAAGAGCCACAACATTGTCCTTGtagagaat
tttcaaaaatcctttcGCTATAATCTTACTTTGAATTATAGTTATAGACA
CAGAATGAGTTCAGTTAcgtaaaaagtttaattacacaaagaaaaaaatc
aaaaaattccaaatACAATCTTGAAAATTTAACGAAAAGGGCTATTAAAT
CTACCcatatttctatttttgaaagtCAGTAATATCAAATTTTAGCTTGG
TTTTTCTCACAGATGTAAACTTTTTGTGTGGGCACAGTTTCTTCAAAAAG
TCAGGGACACCTCCTTCATAAAACAAACTATGGAGGCCAAGATGCACAAC
CAGGGCAAAATTTTGACAGCTTCCCTTATCTTTGAAAACCCTGCCATAAA
TCCAATCCGCATTGTTCATTTCAGAAACACTAGTTCCAAGTGCAAACACA
TTATCTTCTTTATCGTGATAACCTGAAAGCTCAGCTATAACATTGGATTG
TATCTTCCTATTGTGTTTAGCAGCTTTCTTCAAAAGCCCAGCTGATCTGG
TCGGACAAAAATAAATggtgctttgaaaggccattttgtttttccatttt
tgttgTCTAGCTTTCTTTACTTCCTCACAAAGCATTTCATAATCATAGTA
ACAATAATCATCATCTTCTTTGTCTGAGTTAGTACTCTCCCATTGACACC
AATCATAGCGATTTATAGTATTACAGACACTTGGATTAAACTCCTCATAA
TCGTCACACATCAATAAAATCTGATCCATCAGTTTACGAGGATCGATACT
CTCATGGTGGTACATGACAAATGGATCACAATCTTCCATGGGTTTGATGA
CGCTGGTGTAGTAATAACCTGGTTTGAAGTGACGTACTGTGTTAACATAT
CCATGTCGTTCAGGAAAATCTTGCTGTGGTATTTTATGTTGAGCATCCTG
TAAATTCCCAAACGATACTAAATTCGTCACACGAACTTTAAGGGAGCGAT
CTTCTTTGATCATTGGGTAGATATAACCCTCAGCAAATACTTTTTCCACA
ACTGGTGTAAATGATTCCATCTGTCTTTTATACGTATACAGAAAGTATAG
AAGCTTATCATTGatcttctttgttgtttgtgattCAAATTTAGCATTTA
GATTGTCGCTATGACCACCATAATTTATACCATCTTTGCATTTACGATCA
GAATAAGaacagttttgatttattaGCACACCATAGGCATAAGTTTGCTT
GAACGAAAATTCTTCAACTTTTCCTGTCTCGAATAATTTCTTCCTTCTAA
CAATGTAGATAGTTTCACCACTCGATAACACGTGATCCTCGGATGTCTCT
TCGTTCCATTCATCATTCTGCAAAGCaaataatttgatattttgattcGT
TGGTGATTTCATGGCTGGATGATAAGGCAACGACATTTGCTCTTCCCTTT
TTGTAGGCTGGAACA Run BLAST on NCBI transcript from alignment at scaffold_313:472868..474561+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058712 ID=TCONS_00058712|Name=TCONS_00058712|organism=Clytia hemisphaerica|type=transcript|length=1694bp|location=Sequence derived from alignment at scaffold_313:472868..474561+ (Clytia hemisphaerica)
gccaaaaatcagaaaaaactaatgagccaatctcgagaaaagctggtaac
agacggacggacggacggacgaacggacggacggacggacggacgaacgg
acaaaggttaatttataggacctcaaGGTAGGTCCAACGATGATAAACAT
TTCTTATGGTAAGCACCCACAAGAGCCACAACATTGTCCTTGtagagaat
tttcaaaaatcctttcGCTATAATCTTACTTTGAATTATAGTTATAGACA
CAGAATGAGTTCAGTTAcgtaaaaagtttaattacacaaagaaaaaaatc
aaaaaattccaaatACAATCTTGAAAATTTAACGAAAAGGGCTATTAAAT
CTACCcatatttctatttttgaaagtCAGTAATATCAAATTTTAGCTTGG
TTTTTCTCACAGATGTAAACTTTTTGTGTGGGCACAGTTTCTTCAAAAAG
TCAGGGACACCTCCTTCATAAAACAAACTATGGAGGCCAAGATGCACAAC
CAGGGCAAAATTTTGACAGCTTCCCTTATCTTTGAAAACCCTGCCATAAA
TCCAATCCGCATTGTTCATTTCAGAAACACTAGTTCCAAGTGCAAACACA
TTATCTTCTTTATCGTGATAACCTGAAAGCTCAGCTATAACATTGGATTG
TATCTTCCTATTGTGTTTAGCAGCTTTCTTCAAAAGCCCAGCTGATCTGG
TCGGACAAAAATAAATggtgctttgaaaggccattttgtttttccatttt
tgttgTCTAGCTTTCTTTACTTCCTCACAAAGCATTTCATAATCATAGTA
ACAATAATCATCATCTTCTTTGTCTGAGTTAGTACTCTCCCATTGACACC
AATCATAGCGATTTATAGTATTACAGACACTTGGATTAAACTCCTCATAA
TCGTCACACATCAATAAAATCTGATCCATCAGTTTACGAGGATCGATACT
CTCATGGTGGTACATGACAAATGGATCACAATCTTTCATGGGTTTGATGG
CGCTGGTGTAGTAATACNGGATCGATACTCTCATGGTGATACATGACAAA
TGGATCACAATCTTCCATGGGTTTGATGACGCTGGTGTAGTAATAACCTG
GTTTGAAGTGACGTACTGTGTTAACATATCCATGTCGTTCAGGAAAATCT
TGCTGTGGTATTTTATGTTGAGCATCCTGTAAATTCCCAAACGATACTAA
ATTCGTCACACGAACTTTAAGGGAGCGATCTTCTTTGATCATTGGGTAGA
TATAACCCTCAGCAAATACTTTTTCCACAACTGGTGTAAATGATTCCATC
TGTCTTTTATACGTATACAGAAAGTATAGAAGCTTATCATTGatcttctt
tgttgtttgtgattCAAATTTAGCATTTAGATTGTCGCTATGACCACCAT
AATTTATACCATCTTTGCATTTACGATCAGAATAAGaacagttttgattt
attaGCACACCATAGGCATAAGTTTGCTTGAACGAAAATTCTTCAACTTT
TCCTGTCTCGAATAATTTCTTCCTTCTAACAATGTAGATAGTTTCACCAC
TCGATAACACGTGATCCTCGGATGTCTCTTCGTTCCATTCATCATTCTGC
AAAGCaaataatttgatattttgattcGTTGGTGATTTCATGGCTGGATG
ATAAGGCAACGACATTTGCTCTTCCCTTTTTGTAGGCTGGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058712-exon-scaffold_313-1491911889:472868..473830 | TCONS_00058712-exon-scaffold_313-1491911889:472868..473830 | Clytia hemisphaerica | exon |
| TCONS_00058712-exon-scaffold_313-1510915933:472868..473830 | TCONS_00058712-exon-scaffold_313-1510915933:472868..473830 | Clytia hemisphaerica | exon |
| TCONS_00058712-exon-scaffold_313-1575043694:472868..473830 | TCONS_00058712-exon-scaffold_313-1575043694:472868..473830 | Clytia hemisphaerica | exon |
| TCONS_00058712-exon-scaffold_313-1491911889:473910..474561 | TCONS_00058712-exon-scaffold_313-1491911889:473910..474561 | Clytia hemisphaerica | exon |
| TCONS_00058712-exon-scaffold_313-1510915933:473910..474561 | TCONS_00058712-exon-scaffold_313-1510915933:473910..474561 | Clytia hemisphaerica | exon |
| TCONS_00058712-exon-scaffold_313-1575043694:473910..474561 | TCONS_00058712-exon-scaffold_313-1575043694:473910..474561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:472868..474561 + |
Blast
The following BLAST results are available for this feature:
|
