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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058717 ID=TCONS_00058717|Name=TCONS_00058717|organism=Clytia hemisphaerica|type=transcript|length=1136bp AAAGGGTCCTTTTAATTATCTTTTTTGTTTAGATGTAAATACAAGATTTA AAATGTTCTAGTCCATATCAAAAGCAAACTCCATGACTAgaactaaaaaa acaaacacaattcAAGATGActtaaactcaaaatttccaaataatgGACA GCTACTCAAGTGATAGTAGCTTTAGCACTTTCCAAAGTGAAACCAGCAGT CTCAGTGATGCAAATTCGTCACACTTATTTTCTCAACGCAGTAGTGGAAG TGCAAGTGGAGGGGGCAAGCAAACAAATGTCAAGTGTCGTTATTTTATGA ACAATGGGTATTGTTTTTATGGTGACCAATGTCAATTTTCACATATCAGG CCTGGTGGTGCTAGTCCTTTGACGCACCAAAATCATGAAAGCTATGCAAG TACAAGTGAAGATGATTCTGCTTTCCTACCATCTGCACCAACTTTTGTTC CCAAACAACCGCAATCACCTCCACAACCACCTCCACAACCACAACCACAa ccacaaccacaacaacagcaacagcaTCAGCATCAGCATCAACCACAATC GCTgcaatcaaaatttaatgatcatcattcaaaaagacttttcaacAAAC AATTTCCTTCGTCAAATAAACCTCCAAGCAATACTGATTTGTTAAATCAG CAATTTCGAAGAATGAGGATAATGCAACAAGCCAATagtAAAGATTCTCA AGAGAACTTTCAACAAAATGATCGAGGGAACAAAACTCTGCCGCATCTAC AGATACCTTCCAACAAATTTGATCAAACATCTTTCTTTATGTCTCAGCAA ATGAGAATGGAATTACTCAAACAACGCTCAGTTCTGTTGTCAGAAAACAA AGATCTTGCTGGGCTTGGACTCccagaaaatattgaaaactatCACAGCC TTCATCCTTTAGAAGATATCAAAAGCCAAATTTCAgGACAAAGACTCTTT GGATATACTTCAACTTGTTATAGAGTTGTCAATTCTAAAGATGGCCTCCA TTACTGTATGAGAAGGATACATGGTTTTCGCTTATTGAATCCAAAGGCTG TGAGCAGTGTTGAGAAATGGAAGAAAGTTAGCAATTCAAATATTGTGCCT TTGAAAGAAGCTTTCTCATCTAAAGCATTTAATGAC Run BLAST on NCBI transcript from alignment at scaffold_313:509732..517356+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058717 ID=TCONS_00058717|Name=TCONS_00058717|organism=Clytia hemisphaerica|type=transcript|length=7625bp|location=Sequence derived from alignment at scaffold_313:509732..517356+ (Clytia hemisphaerica) AAAGGGTCCTTTTAATTATCTTTTTTGTTTAGATGTAAATACAAGATTTA
AAATGTTCTAGTCCATATCAAAAGCAAACTCCATGACTAgaactaaaaaa
acaaacacaattcAAGATGActtaaactcaaaatttccaaataatgGACA
GCTACTCAAGTGATAGTAGCTTTAGCACTTTCCAAAGTGAAACCAGCAGT
CTCAGTGATGCAAATTCGTCACACTTATTTTCTCAACGCAGTAGTGGAAG
TGCAAGTGGAGGGGGCAAGCAAACAAATGTCAAGTGTCGTTATTTTATGA
ACAATGGGTATTGTTTTTATGGTGACCAATGTCAATTTTCACATATCAGG
CCTGGTGGTGCTAGTCCTTTGACGCACCAAAATCATGAAAGCTATGCAAG
TACAAGTGAAGGTTGGCTTTCTTACTTACAAACAAACTTGATTCTAACTG
ATTCTACCACTGAGCTGCTACTGCTACGAGTACTCTAATTGCACTGTGGG
TCAAAACATTCCTAAATAGAAAATTTCGTTGAATCAACCAACATCAAGTA
GTGTTACCATTAAGGTAACACTTTTCTGATAACTCCGATCAAAATTGGCT
AAATCCtcggtttataaaggtcagcaCATAatcatggtttcagccccccc
ccccccccccttttagggggggggggggaaaaaaaaatttttttttttcc
cccccccccccccgaatagggggggggggggaaaaaaaaatttttttttt
tcccccccccccccccgaatagggggggggggggaaaaaaaaattttttt
ttttcccccccccccccccttgttaGGGATTGGGGGCTAAtattttgcaa
ttctttggggttacctattcattggGGGTACCTAGCTGTTTTGATGGAGG
CTCTTGGGGCTgtgtatattttccaaattaaacatttcaaaattttcaaa
ttattcagtttttttacaCCAGCACCCAGTTTCCCCATCCGATTctcttg
tttcttttgtttcccaTCACGTCATCTTttactatatttttcaaatgtga
ttgtttttatttatagccgccatctttatagcataaaaacaaagcttttc
tcatgcttcaatgggggcacctgaaaagtgggctgaaaccatgataGGTC
GACACATAGATTGTTGTGTCTGGCATATTATTGTTGATAGTTAAACTTTT
ACACAactgaaataaaagaaaagaaaaccagAAAGTTTATAAGAAGAGAA
CCTTCCTTCCAATAAATCTTTAACCACAGTGATTTGTTTTACATTTTGTA
GATGATTCTGCTTTCCTACCATCTGCACCAACTTTTGTTCCCAAACAACC
GCAATCACCTCCACAACCACCTCCACAACCACAACCACAaccacaaccac
aacaacagcaacagcaTCAGCATCAGCATCAACCACAATCGCTgcaatca
aaatttaatgatcatcattcaaaaagacttttcaacAAACAATTTCCTTC
GTCAAATAAACCTCCAAGCAATACTGATTTGTTAAATCAGCAATTTCGAA
GAATGAGGATAATGCAACAAGCCAATGTAACTTGATTATGCTTTCTTTTG
TACTGCTATTGGGCAGCCATCTTTTTAATCGCATCAGTACAGTTTTCGTT
CATGTTCCCTATATTTTCTTTGCATCAAATGCAATCCTTTCTAACATGAC
CATGTCAAGATAACCTTCTAAGACATCATCTTCcttttttatggtttttt
tttttagagtAAAGATTCTCAAGAGAACTTTCAACAAAATGATCGAGGGA
ACAAAACTCTGCCGCATCTACAGATACCTTCCAACAAATTTGATCAAACA
TCTTTCTTTATGTCTCAGCAAATGAGAATGGTCTGTCTTatcatctttta
ttttttatttattttttgtgtatCCTTTGAGTTTCTCCCATAGTCTCAAA
GATATCTAAACTTAGTTGTTTGTCCATTGTTATTAGacaatcttcaattt
tcatttactCTCAGGAATTACTCAAACAACGCTCAGTTCTGTTGTCAGAA
AACAAAGATCTTGCTGGGCTTGGTAGGTTGAAATCTTCCTAGCAGTCTGC
TCAACCAAATCTTCaagattgtttttttgcttgtttaatCTTGGTACAAA
CTTTAATTTTCACCATTAATAAAAATGTACTCTTTCATCGTAGGACTCcc
agaaaatattgaaaactatCACAGCCTTCATCCTTTAGAAGATATCAAAA
GCCAAATTTCAGTAAGTTGGGCACTCTAAAGATTTCTGTCTGCATAGAAG
AAATCTAAATACTAATTTCGagcaaaaaatagcaaaattttcaaataatg
gGAGCTAATTTCCTTGAAATCATACCTCTAAGTCCCCAATAATGAGGTTA
ATGTTAAAGTGAGGTTCCAAAGATAAGTAACAGCTGGTAAATCTTGTATT
TTAGGCATCTCAGTCAACTTATTATTTAAGATtattaattaaaattaaaa
tcgtAAAGAAAATACAGAACACAgaaaatcacaatttttttaaaagattc
agtttttctcatttttcaggGACAAAGACTCTTTGGATATACTTCAACTT
GTTATAGAGTTGTCAATTCTAAAGATGGCCTCCATTACTGTATGAGAAGG
ATACATGGTAAGAagatattctattttttttgaaaaatctcacaAACTAG
GGAAAACTTGATGCAATAAAGATTTTCTTTGCATAGTTTTTTTATCCTCA
CGCTTTGATCTATTGTATTGTAATGTCTATATTTCGATTCCTTTTCAGGT
TTTCGCTTATTGAATCCAAAGGCTGTGAGCAGTGTTGAGAAATGGAAGAA
AGTTAGCAATTCAAATATTGTGCCTTTGAAAGAAGCTTTCTCATCTAAAG
CATTTAATGACACATGTGAGTATTTGTAGTATTATTTCTTGAAAGTTGCT
CTAAATTCAGTAAATTCAAgtaaaatacatatttttattaTGAGCACTCA
CAAGATTCTTGGATAAAATTCCAGATTGATAGACACCTTGtttaattttc
agctttgatTTTCATCTATCAATATTACCCTGGTGCAGAGACAGTAATGG
CAAGacatttcaaaaatatcaatacaaCAAGAAGTCCACACTCTGAATCA
GCCTTCTGGCATGGAGGGAATCAGAATTCCTCTGGATCAAGTTTTGGTGG
TAAAGTGACACAAAAAGTGATGCCTGAGCGTTTGATATGGAGCTATGTGA
TTCAATTAACTGCTGCAATTAGGCAGATACACAGTCATGGATTAAGTTGT
CGTGCTATTGACCCATCCAAGGTTCTGTTGATAGGAAACTCAAGGTTTGT
ACATGTGTCAACATTGAACTCTACTACACGTTACTATTAATTTTCTATTA
TTAGTTTTTAAGTTTCATTATAGGCTTCTCTATATTCACTTCTACTCTTT
CTTGCATAGTAAATCACTGGGAAAATTTTACACTTGGAcactttttcatc
aaatcctttaaaatataaattttagttTAGAGAAATCTCtggaaatctct
tttttttctaCAGTTTGAAACAAGCACCTTAAAACGTTTTATTGTTTATA
AAACGTTTTATTGTTTATAAAACTTTACAAAGTtaaaattgaagtttttt
ttgtttccagGTTGCGTTTGAATTGTCCTGGCATTCTGGATGTGCTAACA
GATAATGAACCTACCTCACCTGCTATGGTCGTCCATTATCAAGTCTGAAT
ACCCTTCATAAGATATAACTTTTATCTCTCATTATAAGATTTTACTAACC
TCAGTTTTGTTggttatttttctttgtaaagccataaaaaatgtttctaa
tGAAATGACTAACATCTGAacaatataatctgcagtgaAGACAAATACTT
TTGCACATCGATTTTTATCCAAGTTGTAGaccaaattttctttaaagCTC
ATAAGGTTGATTactttatttttctcttctttacTTTTTCAGCAAGAGGA
TTTGGTTGCACTTGGGAAATTGATTCTAGCTTTAGCATGCTATTCAATGG
AATCTGTCCAACGTGAATCGATCCAGGCGTCAATAGAGTTTGTTGCAAGG
AACTATTCTAAAGACCTCAAAACCCTCATATGGTATACACTTTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTCTCTGTCAGGCACAAATTACATCGTTTTGAGCCATTTACATAAGGA
CGGGCGTGGTCAATTATTTCCCAGTTCAATTTAGGGGAGATATCCTTCAA
TTGGAGGTCCCACACGTAGTTTGAAAGTTCGGTTGATTTCTTCTTGTCTT
CATTCCTGAACGTATGTTTTTGCCTTCCTCGGTATCGATGAACGTATGTT
TGTGGCCATACCAACGTTGTTTGAAAGAATTGGCAGTTAAACCAATGTAG
TGTTTGCCTTCCTCGGTATCGAAAATTTAAATTGGCTCTGATTTCATTGA
GCACTCTGCAgcatcaatcacaaacaaatcGATTCTTGGATATAATTTAA
ATTAACTTTTTCCAAATTGATACACAGCTCGTTCAATTTTCAGCTTTGAT
TTTCATCTATCAATATTACCCTGGTGCAGAGACTGTAATGGCAAGacatt
tcaaaaatatcaatacaaCAAGAAGTCCCCACTCTGAATCAGCCTTCTGG
CATGGAGGGAATCAAAATTCCTCTGGATCAAGTTTTGGTGGTAAAGTGAC
ACAAAAAGTGATGCCTGAGCGTTTGATATGGAGTTATGTGATTCAATTAA
CCGCTGCAATTAGGCAGATACACAGTCATGGATTAAGTTGCCGTGCTATT
GACCCATCTAAGGTTCTGTTGATAGGAAATTCAAGGTTTGTACATGTGTC
CATTGAACTCTACTACTCGTTACTATTAATTTTCTATTATTAGTTAAGTT
TCATTATACCTGGCTTCTCTGTATTCACTTCTACTCTTTCTTGCAGTAAA
TCACTGGGAAAATTTTACACTTTAACACTTTTTCACCAAATCCATtaaaa
taccgggtgcgccacaaaaaaagtctctctctttaaaagtaattttctcg
aaatctaaaaattttaaaagaactattcctattttattggaaagaagaaa
aataaacttaaattttgatgggtcatttattgaattcaattcattagatc
aaaagttatgctcacttgaataaaaaagttacttttgaaAAGTgcccaaa
aacgttaaaaatcgacctatcaaattattcagaagcataattacatgata
tcagtatttttgtttcagtcattaaaaatgataattagctatctaaatga
ccttttgttatttaaaggaaggttgaatttcaatgaaaggaagaaaattc
gtcaaaaaaggccaaaaaatctggtagaattcataaaaataNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTAGGACTCccagaaaatattgaaaactatCACAGCCTTCATCCTTT
AGAAGATATCAAAAGCCAAATTTCAGTAAGTTGGGCACTCTAAAGATTTC
TGTCTGCATAGAAGAAATCTAAATACTAATTTCGagcaaaaaatagcaaa
attttcaaataatggGAGCTAATTTCCTTGAAATCATACCTCTAAGTCCC
CAATAATGAGGTTAATGTTAAAGTGAGGTTCCAAAGATAAGTAACAGCTG
GTAAATCTTGTATTTTAGGCATCTCAGTCAACTTATTATTTAAGATtatt
aattaaaattaaaatcgtAAAGAAAATACAGAACACAgaaaatcacaatt
tttttaaaagattcagtttttctcatttttcaggGACAAAGACTCTTTGG
ATATACTTCAACTTGTTATAGAGTTGTCAATTCTAAAGATGGCCTCCATT
ACTGTATGAGAAGGATACATGGTAAGAagatattctattttttttgaaaa
atctcacaAACTAGGGAAAACTTGATGCAATAAAGATTTTCTTTGCATAG
TTTTTTTATCCTCACGCTTTGATCTATTGTATTGTAATGTCTATATTTCG
ATTCCTTTTCAGGTTTTCGCTTATTGAATCCAAAGGCTGTGAGCAGTGTT
GAGAAATGGAAGAAAGTTAGCAATTCAAATATTGTGCCTTTGAAAGAAGC
TTTCTCATCTAAAGCATTTAATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058717-exon-scaffold_313-1491911889:509732..510142 | TCONS_00058717-exon-scaffold_313-1491911889:509732..510142 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1510915933:509732..510142 | TCONS_00058717-exon-scaffold_313-1510915933:509732..510142 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1575043694:509732..510142 | TCONS_00058717-exon-scaffold_313-1575043694:509732..510142 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1491911889:511033..511307 | TCONS_00058717-exon-scaffold_313-1491911889:511033..511307 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1510915933:511033..511307 | TCONS_00058717-exon-scaffold_313-1510915933:511033..511307 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1575043694:511033..511307 | TCONS_00058717-exon-scaffold_313-1575043694:511033..511307 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1491911889:511489..511611 | TCONS_00058717-exon-scaffold_313-1491911889:511489..511611 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1510915933:511489..511611 | TCONS_00058717-exon-scaffold_313-1510915933:511489..511611 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1575043694:511489..511611 | TCONS_00058717-exon-scaffold_313-1575043694:511489..511611 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1491911889:511746..511803 | TCONS_00058717-exon-scaffold_313-1491911889:511746..511803 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1510915933:511746..511803 | TCONS_00058717-exon-scaffold_313-1510915933:511746..511803 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1575043694:511746..511803 | TCONS_00058717-exon-scaffold_313-1575043694:511746..511803 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1491911889:516639..516706 | TCONS_00058717-exon-scaffold_313-1491911889:516639..516706 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1510915933:516639..516706 | TCONS_00058717-exon-scaffold_313-1510915933:516639..516706 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1575043694:516639..516706 | TCONS_00058717-exon-scaffold_313-1575043694:516639..516706 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1491911889:517015..517102 | TCONS_00058717-exon-scaffold_313-1491911889:517015..517102 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1510915933:517015..517102 | TCONS_00058717-exon-scaffold_313-1510915933:517015..517102 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1575043694:517015..517102 | TCONS_00058717-exon-scaffold_313-1575043694:517015..517102 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1491911889:517244..517356 | TCONS_00058717-exon-scaffold_313-1491911889:517244..517356 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1510915933:517244..517356 | TCONS_00058717-exon-scaffold_313-1510915933:517244..517356 | Clytia hemisphaerica | exon |
TCONS_00058717-exon-scaffold_313-1575043694:517244..517356 | TCONS_00058717-exon-scaffold_313-1575043694:517244..517356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_313 | supercontig | scaffold_313:509732..517356 + |
Blast
BLAST of TCONS_00058717 vs. Swiss-Prot (Human)
Match: PAN3 (PAN2-PAN3 deadenylation complex subunit PAN3 OS=Homo sapiens GN=PAN3 PE=1 SV=3) HSP 1 Score: 110.538 bits (275), Expect = 5.504e-26 Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 3
Query: 735 TLPHLQIPSNKFDQTSFFMSQQMRMELLKQRSVLLSENKDLAGLGLPENIENYHSLHPLEDIK--SQISGQRLFGYTSTCYRVVNSKDGLHYCMRRIHGFRLLNPKAVSSVEKWKKVSNSNIVPLKEAFSSKAFND 1136
T PH+ K + SFFM+ ++R EL+ + + +++ +P +++YHSL PLE + ++I FGY ++CY+ VNSKD L YC+RRIHGFRL+N K + V+ WKK+ +SNIV L+E F++KAF +
Sbjct: 427 TAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFAE 562
The following BLAST results are available for this feature:
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