TCONS_00058726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058726
Unique NameTCONS_00058726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058726 ID=TCONS_00058726|Name=TCONS_00058726|organism=Clytia hemisphaerica|type=transcript|length=2224bp
GCTCGTTATAGGTGCAAACATGTGCGCAGCTGATTTATTTTGTCACTCGG
TCGGCTTCAACCGATTGCTCCCTGCTTGAATCCTTTGTGTCTTGTCAAGA
AAACACTTGGACCCCAATCCTTGCAATTAAAAGAAGTGTTTTTGCATGAT
AGATTTGTTAGTGAAGATATGGCGGATTTGATCAGCTCTACATCTTATGT
TCCATCAGACGGCATGAAAGTTGAAGATTTAATGAAATCAGGCACCGGCA
TCACTTACAATGACTTCATTATATTGCCAGGATATATCGACTTTGGCACT
GGAGATGTGGCATTGAATTCACCATTGACGAAAAAGATCACCTTAAAAAC
ACCATTCATAAGTTCTCCTATGGATACTGTCACAGaatCTGATATGGCAA
AGACTATGGCTCTTCTTGGAGGTATCGGTATAATTCATCATAATTGTTCA
ATCGAATTCCAAGCAAACGAAGTACACAAAGTCAAACGTTTCGAACAAGG
TTTCATAACAGACCCTATTGTGATTAGTCCTTCGCATACAGTCACTgatg
tcaaaaatattcacaaaaagtTCGGCTTCTCTGGCTTTCCTGTCACAGAG
AATGGGAAAGTTGGTGGTAAATTAGTGGGTATTGTCACTAACCGAGATGT
TGACTTCATCTCACCTGAAGATCATGAAAAACCAGCGTCAGAGATCATGA
CAATGAAAGAAGAATTGACCGTGGGAAGAGATGGCATCACCCTCAAAGAA
GCAAACGAAATTCTGTCCAAAAGTAAAAAAGGAAAACTTCCGATCGTCGA
CGATGATTTCAATCTGGTTGCGTTGATCTCGCGGACTGATTTGCAAAAAA
ATCGTGAATACCCTTTAGCTTCTAAAGATTCCAAGAAACAACTACTCGTT
GGAGCTGCTATCAGTACACATGACGAAGATGTGCCACGTCTAGCAGCACT
CGTTGAAGCAGGGGTTGATGTTGTTGTTCTCGATTCTTCACAAGGAAATT
CATCCTTCCAAATCGAACGTATCAAAGAAATCAAAGCCAAATATCCTAAT
CTAGAAGTCATTGCTGGAAACGTTGTCACTGCTGCACAAGCTAAGAATTT
AATTGATGCCGGCGCTGATGGCTTACGTGTGGGTATGGGTAGTGGATCCA
TTTGTATCACACAAGAAGTGTGTGCTGTTGGGCGGCCCCAAGGTACTGCC
GTCTTTTATGTCAGTGAATACGCCCGTCGTTTCGGTGTTCCTTGTATCGC
TGACGGGGGTATTTCAAATGCTGGACACATCATTAAAGCGTTAACGCTGG
GAGCATCGACTGTGATGATGGGCTCGTTATTAGCTGGTACTTTTGAAGCG
CCTGGTGAATACTTCTATCAAAATGGCGTTCGTTTGAAGCGATACCGTGG
TATGGGATCGCTCGGTGCTATGAAAAGCAAAGGAAGTCAAAGTCGCTATT
TCGTGGAAAGTGACAAAGTGAAAGTTGCTCAAGGTGTCAGTGGTTCAGTG
GAAGATAAAGGGAGTTTGTTCAAATTCATTCCTTACCTTACTGCGGGTGT
TCAACACGGATGTCAAGATATTGGAGCTAAATCTCTNATCCCTTACCTTA
CCGCGGGTGTTCAACACGGATGTCAAGATATTGGAGCTAAATCTCTTACT
TCGCTAAGATCGATGACATACAGTGGACAATTAAGAGTTGAAAAACGCAC
ACCATCCGCTCAAAGAGAAGGAGGGGTGCATGGCCTTCATTCGTACGAGA
AGCAACTTTTTTAAAATGGTCTAGCTaattaattgcactttttaatCAAT
ATGACATGAAAATAATGTTTGGGACGCTGGCTGTATTTTTACACTTCGTT
GTATTTGGTCCAtggttaaatatatttttatttgaatttttagatGAATT
AGTTGATTAGTgattagaaaatttttctttgagttttttATATTGTGTAc
tgtaattaaatattaaaatagaaaattactttttgtttattatatcctaa
atattgttgaaagttttattttgttttctcaCATTTGTATTTTGTCCTTC
TTCACCTTTGAAACCAGTTGAAACCTACTTTTGATGACTGCTTgtttcgt
ttgttttttttgcggAATCAAACGATTTGGCATGACACCTCTTACAAATC
CCGTTAGAACCCGTTAGTTAGTCTAGAATTATTTATCAATCTTTTTACaa
tgaatttttaaacattttcggTAG
Run BLAST on NCBI

transcript from alignment at scaffold_313:525807..539907+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058726 ID=TCONS_00058726|Name=TCONS_00058726|organism=Clytia hemisphaerica|type=transcript|length=14101bp|location=Sequence derived from alignment at scaffold_313:525807..539907+ (Clytia hemisphaerica)
GCTCGTTATAGGTGCAAACATGTGCGCAGCTGATTTATTTTGTCACTCGG
TCGGCTTCAACCGATTGCTCCCTGCTTGAATCCTTTGTGTCTTGTCAAGA
AAACACTTGGACCCCAATCCTTGCAATTAAAAGAAGTGTTTTTGCATGAT
AGATTTGTAAGTATGCTTTTTCTCTAGGCCTTTAATATTCTGCTTTGACA
CAGCTGCAGGACTAATGCAGAGCCTAAAAACTGCTAAAAATGATGTGTAG
ACCAGAAAGATAAAACTAAAGCGGCATAAAACGGAACGGTGCcagtttta
ttttatctttctGGAGCATACAGATGGATAAAAATATAGGTAATTCTAGG
AGAATATAATATATTTATTAACTGGTTGTGCAGGGTTGTGACATATAAGT
GGTTCCAGTTTTCAGAGTATGGCAGAAATCATTGAGATCTCGAGGGCAGA
GATTGCTCACTTTTCAAGGGCTGgggcaaaattttgatattatcTACAGT
TCAGGggcaaaatcattgaaaactgGCTATATTTACCTGTTTTTCTGGCT
TTTTTGTGGTGGGAAACAGATCTTAGGGGCAGAGTTTTATGTTGGAAATT
TTCCTTGGGGGCAACcatgacatgctctgaaaacCGGAAGTGGTTGAGTA
CAGTTGAAATACGTTGtgcaaagtgccgtaaaaaatcattgaatacttta
aatcttaaatattttcattttgaagagtttttgcaaaaaagtgaaacatg
gaaaagtttcatttttcattggttCAATTGAAATATAagggatttggaaa
actttctatcagtatatacatcaaaatgccaaaaagattttgttcaacca
ccttcacttcaagattgaccaccatagaatgaacttcctttataggatga
accatattcatgtggctttcagccttgcactccatcgcagaggctaatca
attttaatgacttttttgactgatgaccaagttaaaaagttttatatacT
GTAATtgttttatatttgagtattaaaaaggcatgcattcaaataataaa
ggtttaaaatttttctctgggctagttagtaaaatatctcaaataggctc
tgtgatggcGAGAATAACTTTGTATAAAGTTTTTGCTaatcaaataatag
aaatagaaatagaaatggagtgcaaggctgaaagccacatgaatatggtt
catcctataaaaggaagttcattctatggtggcctatcttgaagtgaagg
tggttgaacaaaatgtctttggcatattgatgtaactgtctatgtttggt
tttttgcacaaacccctgtaactatgggcaagcaccccattgctaagatg
ttggctcaaaatcgaaagtgaaactactgaaaatgaaagtaaaattcgGT
CTGCACTCCAAATTCCGTAATCTTGATGTAGGATTTTATAAGCATAGact
gacaatctaactctcgcatcaaattcccaccttcttcagtaaattgaaga
tgagaaaaaaacctgagccttaggatcacggattgaaacaaatatagaac
aagaagggtgggattttagaGCCGCCTGTCGTGCAAGTCATCACATGACG
TCACTGAGAGGCCACGGTGCTAAAAAGACAGGCCTTGTGAAATGtggcaa
tctcattggtggaaatttgataaacagctgcgaaggagcaccgggaagca
atcagtagaagagaccactttcgtttttgttatCGATTGCGATATAAATT
TCTCAGAGGGATtatttgtcaatgtgttgtgtcaacttgtcagcatagta
ttgttgtaaagggaaaggTAAAAGGGGTAAGACTAGCccagtttctaatc
ctgatataggagtttaagcttagactgaCAAAACAGATATAATTCTAAAA
GGTAACTAAACTGGGTccaaacagttagtcacactagcgtcccgccaaaa
tgttTATCAgagattaatgctgcaaaagcgctatatcgtttacttgactc
taaagggattcatgaaaaaataacccagcgcttTTTGTCAGCgctcattt
tcaaaaactatgagaaattgcctaaaatttgagccattgatgaaaatttt
tgagccaagccaaacttgaaaactaatttgaagatcgaCTTCCCAAGAAA
AATATCTATGGGGGAGacagaacccacctagatccgcacactgtcggata
ggctatttcctggaaattttgccgaacctcaaacactgacccatttacat
gtgcggaattatttttactttagcctACAAACAAGGCCAATTAAAAATTA
AAGCGCTGTCTTGGGaattaaataacaaaatttggttgggtgATATCCTG
GCTGCTGCACATTCGCAAtcagtcattttgtcttattttttaagttttca
agttttaattcatgtcttgggaacttgaacttgattcaggtaactctcat
ccttgttgttgcaaatacatcctgtagatgactaatgttgttttttctgg
aAGCTTGATTTCCTACTGCCAAAACCCAAAATATTATGACTGATGAATTA
GCCTGATAACTCGACTTAGTGTTCTAACTCAACTTAGTGTGCTAACTTGA
CTTAGCGTAATAGCTTGACTTAGCGTGCTAACTCGACTTCCCCAGGGAGA
CTTCAAAAGTTGGACCCCCAAAATGAACCCCTAAAATGAACCCCTAAAAT
TGACTACCAAATGAAACCccttgaaattaaaaaaggcTGTTTCTGGTGAC
AAAGGCTCTGGTGATTCTGCTGGTGGTGTGATTGTTCTGGTGGTCAGTTA
TGATGGATCTGGTAAATCTGATGATAGTGATGATAGATCTTGTGGTGATG
ATGATTTTTCTGGTGGCTatgtagcctggagatccatgctatgatttctt
cttttatttttactgaaggcgaaatgtatagcatggttagagttgagagt
ttgaatttcctaaATCCTAGtgacggttgaaaacacagcaaatcaatttt
ttttattttttcattgttcacacttttttagagaaaatgCAAGTtccaaa
atttggtttttattttagtagtGAGAACAGCactaaattcgaatttcaaa
atttggtttttattttagtagtGAGGACAGcactaaattcgaatttccca
ctgtaaattttttgaggccGAAATCTGCCTCGCAGCTTGTACCCCTCCTG
TATAtataagattataaaaatacaggatgAGTCTCTGGCTGGTCATCTGG
CTGGTCATCTGgctatgatgatgatgattctgatggtgGTGATGATGGTG
ATGATGGAACTGGTGGTTCCGTAAATGGAATCAATTTTGTTGATGAATTT
GATGTTGGAATTGATGCTTATATTGCTTATAAATATGAATGTGTTGATGG
GAGAATGGTGCTGGAATGTGATGAAGAAATTAAGGGTGATCATTAGATTC
ACCATCAGATTCATCAACACTGTTGATCCAACTAATAGAATCATCAGTTC
CTTTTATTCCATCATCAAATTCACGACCACCATCAGATTCATCAACATCA
TTGATTGCAGCGTCAGATTCATCAACATCATTGATTCAACTTTCAGAATC
ACCAGATCCATCATTGAATTTGAGTTTTACAGCCAGAAACAACTGTATTT
TTCAATCCATTTGAGGGGTCCAAAactttccggctgaaaatgctggaaat
atgccggttgcacaaagatgcgtattagcaatggccaaaatgtggcTGAG
TTagatttctgagaaaaaatttttcaggccgaaaatgctggaaatcgccg
tttttgtagattttcattggacttattccctatatttctttgtttttttt
cacacaaaaacatcattgataACTATCAAGCAttgtttaattgtcaataa
aactgatttttacacacggaactttctaaaaaatgCTGTATTAGTGGAAA
ATCACCAGGAAAAGCggtttctcttgaatttttcaagctgctgtacttta
tattttttcatgaaattgaacactgatacaaaatggcaataccaATGATG
ACATTTTGTTGTCAAGCCAGCTATCTGCTCTCAAAAGTCTTCGAAAATCA
TatatattttgatttcaaacaaTAACTTCAAGTGCCTTCTTGTGCTTTCC
AGCGAAATGCGTTTTGGAATGGATTttaaagatgttaataatatacATAG
TGGGCAGCCCCCCAGGATTCTGGGGGAGGGGGGTtggtgattttcaaatt
ttttgaatcagGTGGGGGTTGAGTTGATGAAgaatttcaggtgggggtaa
ccctatcAGTGTTTTTTCCAAGCACCCAAATGCCCCCGTTAGACGGTGGC
attaaactcaattcaaattgagCTCATTGATAAATTCTATAAATACATTC
AattttaaccgttttaaagtGCTAGTTAAGACAAAAATATGCTCAGCTTT
CTGAACCCCCCACCAGGGCTAGCCCTGGACCCACAGGGGGGCTCAAGGCG
CCCCCAGCCTCTGATATCGTTGCTTACGCCTTTgttaaaaactcaatttg
aaagtaCAAACAGAGGCATTGCTTGGTGCTTGGAAAAATCCCTGTCCTAT
ACAGGTGGGGGTAgaaattttcaggtgggggttgtgGAGTTTTGAGtgta
tctttcattttttatgagaaccttagttgaaaaaaaaattgaaaaaacta
tcCAACTTTACAAGTAAAAACtacaaaatgtttatttttNAATTGAAAAA
ACTATCCAACTTTAcaagtaaaaaattaaaaaatgtttattttttgtcCT
CCAATCTCTTCCTCTCCAGTTCATATTCATCAGGGGACTTCACTGGAATT
TTGAGCGTTCCTAAAGGAacaaaatctccaagttcacaGGCAAAAttcta
ttgaagaaaaaaatctcacaTTTTTTAACACAGCTACCTCACACTTACTA
ATAGGATCATGAAATGGCTAAAAGATCaggcaaacaaaaaagaatccaaa
cctaaaagaaaaacatccaaacctaaaagaaaaacatcccAATTTGTAGC
ATACTGTATACAACTTTTGAATTTAATATAACACTGGTGAGGGTGTTTCA
ATCAGATCtatcaaacttttaaaatttgagagaaagataaaattggattt
ttcaggtgggggttggaagGTCTTATaaattcaggtgggggttgccCAAG
AAGGTTTGGGTTGAGTAGTCCtcaattttcaggtgggggtaaacCCATGC
AGATGGGGGTAACTTtttaggtgggggttggaggggtgttgcCCACTATG
ATATAAAACTGCACCTTCCTTGTGGCTTTTGAATTCCCCAATTATTTCtg
tgtcattttgaaaataaaacattgaGGGTGCATTAGCATTGAGAACTTAT
TTTCTATGGTCTCATTGCTAATGCTTCATGGATTATTTCTCCTGGCATGG
ATAAGGATAACTATCGTGTTTTAAAAACTGATCAAGAACAACAAGATGAA
GGCTCCAATTTTCAGGacttacaaattttgaaatagttCAGAAAAAAAGA
GATATAAATCCAAAAGcaaactatttcaaaatgaCACAAGGCCAAGTGGA
ATTAAAAAAGNAAAAAAGAGATATAAATACAAAAGcaaactatttcaaaa
tgaCACAAGGCCAAGTGGAATTAAAAAAGGGGAGAATATCCAGGAAAGCG
TTTGAAGGCTCAAAAGAATGTTActgaaaacttattttttctgtgACCCT
TTGCAAGGAAATTTGATagaattcttttcaattttattatttttttcaaa
aatatgcttataatttggctaagtactttagaaaaataaacaaatagcTT
TGAAAACTATTACTGCAAagtaaaataaacaataaaagatTTGATTACAA
TATCGCATTgctactaaagtctgtccagatataattggcagtggaaacaa
gaatacCTGTAACtgttgatagtcaaatataattatggaatttttttttt
gcttgttttagaaaataaaaagcgctatatttgaatgtatttttggttga
aaaattcgcgatttttagcggtttaatttgcgattgtaaaaattgagctt
tttttctgcttacgctataacgttcatttttataccagtggtagttcaac
cttaggttaagaagtttgttaaatttcaaggcaaacagaaaagtccttcg
gaagatacgGGACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcc
ccccccccgtcagctcgcaaccctagtacggGGGTCCCCCCGGGATTACT
GCAAagtaaaataaacaataaagaATTTGATTACAATATCGCATTGCTAC
TACTTCCTAGCTTAGTAAATAAACTGTTTTATTTTACATGCAAATAACAA
CAATGAATTGTGGTGTTTTCTTTCTAAGACATTCAAAGTTTCTTGTTGAC
TTGTTAATCTAAACAATATATATTGGTAGAGGCAATAAAAAGGCTGAATG
ATAAACTTTTTGAACTATTAACAGAACAATTCATTTCATGAGAAGGTAAG
TTTATTATATTAAAATCGACAAATTTGTCCAGCTGGTAGATTTGGTGATA
ATTTATGGGTATCATTATattcaaagttgataaaatttaatgagTGGCTT
GATTTGAAGACTTAAAATCGCAAAACCAAAAAGCAATTTAAATAGTTCAA
CAGTCACATTATCACAGGCTTATAAATAGTGTAGTTAATTACTTTAGCAG
ctcaccaaaatttgaaaatcacagAGTTTTCCTTGTCAGAATAAGTGCAA
TCTTGTTTCATGCAGAGTGCAATTATGTCTGATGTGGTAACTTTTTTACG
TTGTTtttgtattataaaaaaagataaaagctTATCAGACTAGACATTTT
TCAGCAACTGGTATGTACTTACTtatgataaaaatgaaagatCATAGAAA
ATTGTATCACCAGTTTGTGGCTTTAACGTTGAGGAATATTCATATAACAt
aagttttagctttttaaattttgatgtccACTGTTACCTTATTAATTGCG
TTCATATTGTGTTCATAGGTTAGTGAAGATATGGCGGATTTGATCAGCTC
TACATCTTATGTTCCATCAGACGGCATGAAAGTTGAAGATTTAATGAAAT
CAGGCACCGGCATCACTTACAAGTATgtctttttcgaattttctattttt
ttggtgGGTGGCCTCGCCTCAGTTGCCTGATTGTTTGCCTTTTTNCTCGA
ACTAATTTTTGGTGACCTCGCCTCAGTTGCCTGAGAATTTGCCTTTTTAA
TCACCTTTCTCTTGTTTTATATCTCGCAATCTTTTCTTGAAAACTGGTCA
GTTATTCTAAAGTCCGAAGTTCCGATGCAAGTTTTTTTATCCTTTCCTCT
TCAATGCTGAGTGTAACTTTTGATGGTCTCCATCGCCTGCTTGTATAGAT
TCCGTCTTTTATCAGAACTGATCAGTGGACTTTTATTTATTCCCGCCTTT
GAAGagtttttgttcctttttcagTGACTTCATTATATTGCCAGGATATA
TCGACTTTGGCACTGGAGATGTGGTACGTACTTTACCCCCGTTAAAGCTt
ctattttaaatgtttttgttaCAAAGACTGCGTATCGATTTTAATTTATT
ATGTACCCTACCCTGCATTCCATGGCCTTATTTTGGATGTCTAAGTTATG
CATTCTTACAATGCTTGTCTTTCAGTCTgtccaaatttctttttctatat
CACCGATTCGCACAACACGTACTCGTTGTGTTTGGCAATTTAAGAAAAAA
GACGTGCATTCTCTTTCattattttccaaaatctgATAAAACACGTTAGT
ATTTAATTATACCAATGATATGTCGGACGATTTAAAACCAAAGCTCTTAT
TTTTAGGCATTGAATTCACCATTGACGAAAAAGATCACCTTAAAAACACC
ATTCATAAGTTCTCCTATGGATACTGTCACAGGTAAATCTTTTTTCAGTG
ATTAAAATAGATTTCTCTTCAATATTGATCTCGTCAATTTGATAAGGTAC
TGCGGTACCTAGATAAGCTTATTGgctgattaggaagtgttctaagttca
ggccttagaacacttgGCCTGacaagggaatttgagtcaacgcgtttggc
ttggtagggtaaacgcggtgatcacatagcaaaaatgagtgattgtgaag
tgttctaaggcctgaacTAGGGTTCAGAAGACCTGACAAGtgaatttgag
tcactgcgtttggcttggtagggtaaacgcggtgatcacaTAGCTAAAAT
GAGTGGTTAtgaagtgttctaaggcctgaacTAGGGTTCAGAAGACCTGA
CAAGGGAATTTGAGTcgccgtgtttggcttggtagggtaaacgcggtgat
cacatagcaaaaatgagtgatgaGATTAGTtcaaataagaacatttaact
TATAAGAGACGTTCAAATGCATTCAGTGCGACTCTCTGAGCTGTTAGCTT
CTGTTCATTTCTTTTACAGTTGACGCTCGCTTAATTAAATTTCTATTATT
CATATATTTCTATGATTCGAAATTATTCCCAGTCCCCGACAAGGAAGAAa
ctcgaatctctctgtaatttgaaCGAAAAAGATTCCCTGTTCGAGTTTGA
ATTAGCGAGAGTGAACTgtttaaatatttcattttttagaatCTGATATG
GCAAAGACTATGGCTGtaagttgaaaatgttttttttttgtcatgcTTAG
TAACGGCCATTTTACTTTAGCTCTAAGCGATATACTCATCATACTACTAT
GCTCGTAAAGGAACatttttatgattaaaaaagGGTTTTGTTTTATTTAG
CTTCTTGGAGGTATCGGTATAATTCATCATAATTGTTCAATCGAATTCCA
AGCAAACGAAGTACACAAAGTCAAACGTTTCGAACAAGGTTTCATAACAG
ACCCTATTGTGATTAGTCCTTCGCATACAGTCACTgatgtcaaaaatatt
cacaaaaagtTCGGCTTCTCTGGCTTTCCTGTCACAGGTTTGTAATGACT
TTTTTCCCTGCTTGCGTTTCTCCCTTTTTTATGATGTAATGCGagacaaa
tttgatattttgttcTTTGGGAAGACCTTCAGAAAACTGTGGGTCGGTCG
TTCGTTCggtattataaaaataaatttctttaagTCTAGCGTCGGAAGGT
CTAAAAGATTTGTGACGTTTTGAATCAGTACACTTTTTGCTCTTTATCGA
TGAGCTTTCATGCCATTTCAAATGTGATATTTTAAAATCATCTTAGTTTT
GGGATGAATTTacactttttcaacttattCAGTTAAAAATATCTGCAAAA
AACTTATGATATTATTcccattttagaaaaaaacatagTCGGTCTCGCCT
TTATCCATTTTCATAAAAAGGTTGGGCTGGGTTTTTGACTATTAATCGCT
AACTATTTTATTTACATTGTTTTATTCGGATCAAATCACTatattttcac
caaattttcagcaatttttGATGTCAGAAGTAACGTTTAGGTCCTTTCAA
AGTTCGAGGTATTAAAACGGATGTATAAAAGCACCATTTTGGAGTTCGAA
AGTCGAATAATTTATCTTAAAAATAACGTCTTAGCATTTAGGATAGGTCA
Ctccattgggctcttccagaaaaaaaaattgaatatggggggggggttgg
aggatataacattttttggaaatttaaccccccccccccccccccNNNNN
NNccccccccggacaagcatcagttgacctcccggacaagcatcagttga
ccccccggacattcaaaatcacccctaatcagAGCAAATTTACCACTAAA
ACAAGGCaagttttgcagatttttcactaccccctgacaaaatatccaat
atatcctccacccccatgtacaaaaatGTTCTGGAAGAGCACATTAATAC
ATGGGTATTTAGAATAATATAAGAAGGTTACTCaaagttaaaaataaatt
tagatAATTTGGTTTGCACCCTTCCAAATTTTTTACTAATCTTTTCCGTA
GAGAATGGGAAAGTTGGTGGTAAATTAGTGGGTATTGTCACTAACCGAGA
TGTTGACTTCATCTCACCTGAAGATCATGAAAAACCAGCGTCAGAGGTGA
ATTCTTTTTTAACTCATTTGATAATATGCAATTTTTTTCACATACGAATA
TCTAGAGTTCGGACTAGGATAATCTGGAGGTTTTCATGTAATATAATCTC
TACCATTGCGGTCGATTTGCGTAAGGAATCACCTCTGCAAAATTTGTTCT
TCCATATTGGTCGATTTCCCGTTAAAGATACATAGCTTTGCCGAGCCTGA
AAGCCTTTGGATCCCCTGCCTCGTCAGCCATTTCTAACTTAAGGAAGATA
TTTTTagaattcaatttttgtttttactgaCGGGTTTTTTACCATGCTTT
TTACCATGCTTGAATTGTGCATAGAAACATTTTTAGTGTTGATAATTTAC
TGCAATAAAAGTTTGTATTTTATGGAATACATTGTAAAggtttctaaaaa
caaaataaaaatatttattgctgtaaattttttttcccgaaATCAGTCAA
CCAGGGAAATTTAATTCTGCGAATGTTTAAATTTTGGCTAAACCGCTAAA
TTTGCTGTTTTTGAGGTCTAAACCACGGAAGACGGTAAAACCaatttttg
tttagattttataaaaatcccttttattttggaagaaaatCGTTATCACT
TTTTGCTTTCATAGATCATGACAATGAAAGAAGAATTGACCGTGGGAAGA
GATGGCATCACCCTCAAAGAAGCAAACGAAATTCTGTCCAAAAGTAAAAA
AGGTAGGGTCAATTCAATTGCTCACTATTAATTTCGTTAATTTAAACTTT
TGCTTTgagcttaaaactaaaaaacttaaaaacttgCAGATTTTTAACAC
ATAGTCTGAGTGATCAACCTTCCATTTTCTCTAATATTCCTAAATGTCTT
TTTTTCACCTCAGGAAAACTTCCGATCGTCGACGATGATTTCAATCTGGT
TGCGTTGATCTCGCGGACTGATTTGCAAAAAAATCGTGAATACCCTTTAG
CTTCTAAAGATTCCAAGAAACAACTACTCGGTATGCTCATCTTTGCAGCT
CTTGAGTATTATCATTATCGATGTTCTCAAATACGTTCCCTTATCCATAT
ATCTGTTTCATTCCATTATTGACAAGAAACAATTTCCGATGAAATGAGTC
AAAATTCTCCCTGCTATCTTCAGCCGACAAAGCTTTCCGCGATTTTTATC
CTCGCAAAAATTTCAAGACGAGTGTATTAGTGTATAAGTTAATCTTCTCC
TTTCGTTCAGTTGGAGCTGCTATCAGTACACATGACGAAGATGTGCCACG
TCTAGCAGCACTCGTTGAAGCAGGGGTTGATGTTGTTGTTCTCGATTCTT
CACAAGGAAATTCATCCTTCCAAATCGAACGTATCAAAGAAATCAAAGCC
AAATATCCTAATCTAGAAGTCATTGCTGGAAACGTTGTCACTGCTGCACA
AGCTAAGAATTTAATTGATGCCGGCGCTGATGGCTTACGTGTGGGTATGG
GTAGTGGATCCATTTGTATCACACAAGAAGTGTGTGCTGTTGGGCGGCCC
CAAGGTACTGCCGTCTTTTATGTCAGTGAATACGCCCGTCGTTTCGGTGT
TCCTTGTATCGCTGACGGGGGTATTTCAAATGCTGGACACATCATTAAAG
CGTTAACGCTGGGAGCATCGACTGTGATGATGGGCTCGTTATTAGCTGGT
ACTTTTGAAGCGCCTGGTGAATACTTCTATCAAAATGGCGTTCGTTTGAA
GCGATACCGTGGTATGGGATCGCTCGGTGCTATGAAAAGCAAAGGAAGTC
AAAGTCGCTATTTCGTGGAAAGTGACAAAGTGAAAGTTGCTCAAGGTGTC
AGTGGTTCAGTGGAAGATAAAGGGAGTTTGTTCAAATTCATTCCTTACCT
TACTGCGGGTGTTCAACACGGATGTCAAGATATTGGAGCTAAATCTCTNA
TCCCTTACCTTACCGCGGGTGTTCAACACGGATGTCAAGATATTGGAGCT
AAATCTCTTACTTCGCTAAGGTATGAAAGGATGAAGTCGAATTTAGAGAA
AGTTTCtcatgaaagttctcttttcgCTTTAATGTAATATCACCTTATCA
CTTTTGTTTCAGTTCTTCTTTATAATAGATTTAGAGTAAAatactattta
aaaaaaatgcacACACAAATTTCCTTACAGTTAAACATTCAtggtaaaaa
aagtaaaaataccatggcagaaattttaaaatgtatgtCAGTAAAAAAAT
ACTCTTGATATTATTTTTAGATCGATGACATACAGTGGACAATTAAGAGT
TGAAAAACGCACACCATCCGCTCAAAGAGAAGGAGGGGTGCATGGCCTTC
ATTCGTAAGTTGTAATTTGTTGGTTTCTTCTGTAAAAGGGGAGGGGCTGA
ctaatactttaggcgtacaaactttcgcgagcagaaactttcgcgatttt
cgcgaattttggcccttttcgcgaaagtaaatgtctttaaaaattcttgN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGCAAaagaggatgaaaagaagatgTCAAACCCTTATTTTATTA
TGAAAAAGCTTCCTATTGCTTGCCGATGGCGCTATCTTCTGTAGACAGAT
GTTATAAGAAAAATCGACTTCCAACTCCAGATACGTCTGAAATTTCCTTG
CTCTCAGTATTTTATAAACAGTGTTTGCTTTTTTTACCTATATTATTTTT
CCTTAATTTCCTTTTTTAGGTACGAGAAGCAACTTTTTTAAAATGGTCTA
GCTaattaattgcactttttaatCAATATGACATGAAAATAATGTTTGGG
ACGCTGGCTGTATTTTTACACTTCGTTGTATTTGGTCCAtggttaaatat
atttttatttgaatttttagatGAATTAGTTGATTAGTgattagaaaatt
tttctttgagttttttATATTGTGTActgtaattaaatattaaaatagaa
aattactttttgtttattatatcctaaatattgttgaaagttttattttg
ttttctcaCATTTGTATTTTGTCCTTCTTCACCTTTGAAACCAGTTGAAA
CCTACTTTTGATGACTGCTTgtttcgtttgttttttttgcggAATCAAAC
GATTTGGCATGACACCTCTTACAAATCCCGTTAGAACCCGTTAGTTAGTC
TAGAATTATTTATCAATCTTTTTACaatgaatttttaaacattttcggTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036992XLOC_036992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058726-exon-scaffold_313-1491911889:525807..525962TCONS_00058726-exon-scaffold_313-1491911889:525807..525962Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:525807..525962TCONS_00058726-exon-scaffold_313-1510915933:525807..525962Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:525807..525962TCONS_00058726-exon-scaffold_313-1575043694:525807..525962Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:533475..533578TCONS_00058726-exon-scaffold_313-1491911889:533475..533578Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:533475..533578TCONS_00058726-exon-scaffold_313-1510915933:533475..533578Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:533475..533578TCONS_00058726-exon-scaffold_313-1575043694:533475..533578Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:533931..533979TCONS_00058726-exon-scaffold_313-1491911889:533931..533979Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:533931..533979TCONS_00058726-exon-scaffold_313-1510915933:533931..533979Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:533931..533979TCONS_00058726-exon-scaffold_313-1575043694:533931..533979Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:534313..534388TCONS_00058726-exon-scaffold_313-1491911889:534313..534388Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:534313..534388TCONS_00058726-exon-scaffold_313-1510915933:534313..534388Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:534313..534388TCONS_00058726-exon-scaffold_313-1575043694:534313..534388Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:535096..535121TCONS_00058726-exon-scaffold_313-1491911889:535096..535121Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:535096..535121TCONS_00058726-exon-scaffold_313-1510915933:535096..535121Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:535096..535121TCONS_00058726-exon-scaffold_313-1575043694:535096..535121Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:535257..535443TCONS_00058726-exon-scaffold_313-1491911889:535257..535443Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:535257..535443TCONS_00058726-exon-scaffold_313-1510915933:535257..535443Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:535257..535443TCONS_00058726-exon-scaffold_313-1575043694:535257..535443Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:536458..536552TCONS_00058726-exon-scaffold_313-1491911889:536458..536552Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:536458..536552TCONS_00058726-exon-scaffold_313-1510915933:536458..536552Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:536458..536552TCONS_00058726-exon-scaffold_313-1575043694:536458..536552Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:537171..537258TCONS_00058726-exon-scaffold_313-1491911889:537171..537258Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:537171..537258TCONS_00058726-exon-scaffold_313-1510915933:537171..537258Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:537171..537258TCONS_00058726-exon-scaffold_313-1575043694:537171..537258Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:537420..537536TCONS_00058726-exon-scaffold_313-1491911889:537420..537536Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:537420..537536TCONS_00058726-exon-scaffold_313-1510915933:537420..537536Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:537420..537536TCONS_00058726-exon-scaffold_313-1575043694:537420..537536Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:537767..538526TCONS_00058726-exon-scaffold_313-1491911889:537767..538526Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:537767..538526TCONS_00058726-exon-scaffold_313-1510915933:537767..538526Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:537767..538526TCONS_00058726-exon-scaffold_313-1575043694:537767..538526Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:538777..538860TCONS_00058726-exon-scaffold_313-1491911889:538777..538860Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:538777..538860TCONS_00058726-exon-scaffold_313-1510915933:538777..538860Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:538777..538860TCONS_00058726-exon-scaffold_313-1575043694:538777..538860Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1491911889:539426..539907TCONS_00058726-exon-scaffold_313-1491911889:539426..539907Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1510915933:539426..539907TCONS_00058726-exon-scaffold_313-1510915933:539426..539907Clytia hemisphaericaexon
TCONS_00058726-exon-scaffold_313-1575043694:539426..539907TCONS_00058726-exon-scaffold_313-1575043694:539426..539907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:525807..539907 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.4278	48.5928	16.7514	11.7486	38.7813	35.4205	50.816	64.9163	46.3854	47.0874	45.2253	38.6196	53.8481	56.1446	60.9026	76.0118	41.5437	45.8599	20.0994	24.8973	59.4639	69.9233	60.3023	52.209	65.9595	64.0086	78.3515	53.7225	47.0404	33.0622
Blast
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BLAST of TCONS_00058726 vs. Swiss-Prot (Human)
Match: IMDH1 (Inosine-5'-monophosphate dehydrogenase 1 OS=Homo sapiens GN=IMPDH1 PE=1 SV=2)

HSP 1 Score: 726.857 bits (1875), Expect = 0.000e+0
Identity = 361/534 (67.60%), Postives = 421/534 (78.84%), Query Frame = 1 
Query:  169 MADLISS--TSYVPSDGMKVEDLMKSGTGITYNDFIILPGYIDFGTGDVALNSPLTKKITLKTPFISSPMDTVTESDMAKTMALLGGIGIIHHNCSIEFQANEVHKVKRFEQGFITDPIVISPSHTVTDVKNIHKKFGFSGFPVTENGKVGGKLVGIVTNRDVDFISPEDHEKPASEIMTMKEELTVGRDGITLKEANEILSKSKKGKLPIVDDDFNLVALISRTDLQKNREYPLASKDSKKQLLVGAAISTHDEDVPRLAALVEAGVDVVVLDSSQGNSSFQIERIKEIKAKYPNLEVIAGNVVTAAQAKNLIDAGADGLRVGMGSGSICITQEVCAVGRPQGTAVFYVSEYARRFGVPCIADGGISNAGHIIKALTLGASTVMMGSLLAGTFEAPGEYFYQNGVRLKRYRGMGSLGAM-KSKGSQSRYFVESDKVKVAQGVSGSVEDKGSLFKFIPYLTAGVQHGCQDIGAKSLIPYLTAGVQHGCQDIGAKSLTSLRSMTYSGQLRVEKRTPSAQREGGVHGLHSYEKQLF 1761
            MAD + S  T YVP DG+  + L  S  G+TYNDF+ILPG+IDF   +V L S LT+KITLKTP ISSPMDTVTE+DMA  MAL+GGIG IHHNC+ EFQANEV KVK+FEQGFITDP+V+SPSHTV DV     + GFSG P+TE G +G KLVGIVT+RD+DF++ +DH    SE+MT + EL V   G+TLKEANEIL +SKKGKLPIV+D   LVA+I+RTDL+KNR+YPLASKDS+KQLL GAA+ T ++D  RL  L +AGVDV+VLDSSQGNS +QI  +  IK KYP+L+VI GNVVTAAQAKNLIDAG DGLRVGMG GSICITQEV A GRPQGTAV+ V+EYARRFGVP IADGGI   GH++KAL LGASTVMMGSLLA T EAPGEYF+ +GVRLK+YRGMGSL AM KS  SQ RYF E DKVK+AQGVSGS++DKGS+ KF+PYL AG+QHGCQ                    DIGA+SL+ LRSM YSG+L+ EKRT SAQ EGGVHGLHSYEK+L+
Sbjct:    1 MADYLISGGTGYVPEDGLTAQQLFASADGLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKKFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQ--------------------DIGARSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
The following BLAST results are available for this feature:
BLAST of TCONS_00058726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMDH10.000e+067.60Inosine-5'-monophosphate dehydrogenase 1 OS=Homo s... [more]
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