TCONS_00058730 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058730
Unique Name	TCONS_00058730
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2908

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_313:568881..583787+
coding sequence from alignment at scaffold_313:568881..583787+

transcript sequence

>TCONS_00058730 ID=TCONS_00058730|Name=TCONS_00058730|organism=Clytia hemisphaerica|type=transcript|length=2908bp
aaaacaataTAAAAGTAGATTTTGGTGATGATGTTACATCTATATTTCTT
TGGCATAAAACAGATACTCTTCGAAAGCTGAAAGAATGTATTAACAAACG
TTTCAATGTTCCAATAAATGATCAAAtaataaaacatgaaaacattATTG
TGGATGAAGAGTTATTTAGTGCAATCTTTCGGAACCGATTCAACAGAAAT
GttgttttcaaagttgaaattccTGATCCAGTAATTATCAAGGGTAGACG
TGCTTGGATTTCAAAGCAAAATCGAGTCGGTGAAATTGTAGTTCCTGATC
CTGATAAAATAGCTATCCAATTTCAAATCGGGGACCCTGAACGATTAGTT
TTAGACCTTAAACGTGACATAAAATCGGCTCTCCCAGTAGAAAGGAGGTT
GTTTCTGCTAAACAATTGTTTTATATTGGATGATGGATATGTGATAGCAG
ATTTATTTCTCGACTTTGAAGATGTATTGCTAACTATGCTTGATAGTAAA
GAAAATATTCAGCTTATCCTTTCAAAATGGGCTATACCGTTAGTCGATAT
ACTGATTCCAAGGATTGATTGTGAAGATCTCCTCATCGAATATCCTTTAC
ACGAAATTGGAGACATGCGCATTAGTGTCCTGAAAGATTGGATTGAAGCT
CGTTTCCATATCCCTGTAGAAGAACAGGAACTGCATTGTGAAGGTAGGCT
TATTGAGAAGCATGGTATATTTCCTCTAAAACTTACTGACAggttggccc
ctccagaaataATGCGTTTGCGTGTGTACTCAACACCAAATCATGAATTG
GAATCTATTTACCAAGAGAATAATATCAGAACGTTGATACCAATTCATGT
CACCAGTTTTGATACTGACCACTATTGGGTTTATCATTATCGTGAATGTC
AAGATGTGAATGAATTTGTTGAAAGTAAGCTGCAAATACCAGAAGATAAA
CAGCGTTTGTTTTACAAGAATCGTTTAATCAATTCAAATCACGTGTTCGA
AATATTGCAGTGGTCGCCAGATCCTATAAAAGTAAACCTGGCTGTTCAGA
TAGATGATNTGTGTTCGAAATATCGCAGTGGTCGCCAGATCCTATAAAAA
TAAACTTGGCTGTTCAGATAGATGATAATGAGATGGAGTTATTGGAGATT
ATTCATAGATTTGAGATAAGTCGAATACGTTCAATTATCATCAACAGTCC
TAGTGATGGTTCGGTCTTGTTTGATTTACCGCTTTCTAAGAATGGCAATA
TACCCTTAGATATGATATATGAGTGGATCCGAAAGGAAAACCAGGATCTC
TCAATGAGTTGCTTATATCTGATGCGTAATGAAGAAGAATTTCAATACGA
TTTCAATCTTTATAATCTTTTTGTAGATGATGAGAATCGTTTCAGTGAAG
ACCTTTGTATAACATTACTGGTTAGNTTGTAGATGATGAGAATCGTTTCA
ATGAAGACCTTTGTATAACATTACTGGTTAGTCCATCTGACAAACAAGAT
GCTCCGAACGTGGAtagattttgtaaaaaacacggcttgaaatatttcaa
agaagTTCATATCAATTTTTTGACTGGAAAATTCACCGTTGATGTGATTT
CGAATAAGATTTCGACATTAAAGGAGGTTAAAGATCACATTCATCAATTG
AAAGACATTCCGCAACTCCTGCAAGCATTATATCTTGAAAATGCGGCAGA
ACTCAGTGATGAGACAAAGTTAGTTTGAATCCTTTAATGAATCGCCAATC
TATTACTTTTACATTGATAGTAAAACAAGCGAAGGAGATTGAACTATGTT
TACATGGTAACATACTCAATGGACAATTGAGAGTGAAAGTTTTGGTAACA
GATTCCATAACTCGATTGAAAGAGATCGTAAGCGAGCACACAGACATTCC
TTCACTCTTGATCAATATTCATAGTATATATGGAATCACGCAGGAAAATA
TTTCTCTATACGATTGTTACTGGGAAGGTGAAAACCATGACCTTATCAAG
ATCACAATCTACGATGCCCCGCTGCTTCTCTTGAATACAAATGGTGAAAT
AATATGCCCCGCATTCAAAATGCTAACGAAAGAACTGCATTACTAGCTAC
CCAAGAAATAGCTTATGACGTGAAGCAATATGGAAACCAAGTCAAGTTAA
GGAGTAGCGTCTATGCACACACCAATCATTATATCAAGCAAAGCAGACCG
TTTTTCAATGGTAAACGTTTGTGTGGATATGTGTATTTTCAAGGAATGAG
ATGGATTTTAGCAGTCCTTTTCCTCGTCAACTTGTTTTGTTTCGATAGCT
TGTACGTAGGTTTAGTTATGGACTTTTGTAACTTAGTATTTTTGTTGATC
TTCTTGCAACACATGTGTGTTAACTGTTGCACGATGAGGCTAGTTCGTCA
ACAGCCTGTTATCCCAGAACAAAAATTAAGTAATAATTTCTACAAAGTTT
CAATCGTTGAGATGACTGGAGTCTTTGCGGTCAATTATCAACAAAATATC
GGCGCGTTGAAATTGAACGAACAAGAGGTCAAAATGCAAGCTTTTAATAG
CGTTGCTGAAATGTTTATGAATCATGCTCAGAGATACTCCAACATCTGTT
TCCTTGTGGTGATATGTATGTCAGGAAACAGTGCATATTTCACTTATCGC
AAATGGGGTGAGTTGGGATTGAATCAGCAGTTTATGTTCATGAGAAGTTT
ATTTCGATGATTGTAtttacttttgttttattttatcatAGCCTCTTGAA
ACCAATGTATTTGACACACACACAGGTTTTAATCATTGCCTCCATCCATC
ACACACGGGCTTTGATTACTGCCTCCATCGAGTTCAGTGTCTGTGTCCAg
ctccaaaactctaccgccacttttttcccgtaaaccgccctgacgcccta
actctttc

Run BLAST on NCBI

protein sequence of TCONS_00058730-protein

>TCONS_00058730-protein ID=TCONS_00058730-protein|Name=TCONS_00058730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
NNIKVDFGDDVTSIFLWHKTDTLRKLKECINKRFNVPINDQIIKHENIIV
DEELFSAIFRNRFNRNVVFKVEIPDPVIIKGRRAWISKQNRVGEIVVPDP
DKIAIQFQIGDPERLVLDLKRDIKSALPVERRLFLLNNCFILDDGYVIAD
LFLDFEDVLLTMLDSKENIQLILSKWAIPLVDILIPRIDCEDLLIEYPLH
EIGDMRISVLKDWIEARFHIPVEEQELHCEGRLIEKHGIFPLKLTDRLAP
PEIMRLRVYSTPNHELESIYQENNIRTLIPIHVTSFDTDHYWVYHYRECQ
DVNEFVESKLQIPEDKQRLFYKNRLINSNHVFEILQWSPDPIKVNLAVQI
DDXCSKYRSGRQIL

Run BLAST on NCBI

transcript from alignment at scaffold_313:568881..583787+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058730 ID=TCONS_00058730|Name=TCONS_00058730|organism=Clytia hemisphaerica|type=transcript|length=14907bp|location=Sequence derived from alignment at scaffold_313:568881..583787+ (Clytia hemisphaerica)
aaaacaataTAAAAGTAGATTTTGGTGATGATGTTACATCTATATTTCTT
TGGCATAAAACAGATACTCTTCGAAAGCTGAAAGAATGTATTAACAAACG
TTTCAATGTTCCAATAAATGATCAAAtaataaaacatgaaaacattATTG
TGGATGAAGAGTTATTTAGTGCAATCTTTCGGAACCGATTCAACAGAAAT
GttgttttcaaagttgaaattccTGATCCAGTAATTATCAAGGGTAGACG
TGCTTGGATTTCAAAGCAAAATCGAGTCGGTGAAATTGTAGTTCCTGATC
CTGATAAAATAGCTATCCAATTTCAAATCGGGGACCCTGAACGATTAGTT
TTAGACCTTAAACGTGACATAAAATCGGCTCTCCCAGTAGAAAGGAGGTT
GTTTCTGCTAAACAATTGTTTTATATTGGATGATGGATATGTGATAGCAG
ATTTATTTCTCGACTTTGAAGATGTATTGCTAACTATGCTTGATAGTAAA
GAAAATATTCAGCTTATCCTTTCAAAATGGGCTATACCGTTAGTCGATAT
ACTGATTCCAAGGATTGATTGTGAAGATCTCCTCATCGAATATCCTTTAC
ACGAAATTGGAGACATGCGCATTAGTGTCCTGAAAGATTGGATTGAAGCT
CGTTTCCATATCCCTGTAGAAGAACAGGAACTGCATTGTGAAGGTAGGCT
TATTGAGAAGCATGGTATATTTCCTCTAAAACTTACTGACAggttggccc
ctccagaaataATGCGTTTGCGTGTGTACTCAACACCAAATCATGAATTG
GAATCTATTTACCAAGAGAATAATATCAGAACGTTGATACCAATTCATGT
CACCAGTTTTGATACTGACCACTATTGGGTTTATCATTATCGTGAATGTC
AAGATGTGAATGAATTTGTTGAAAGTAAGCTGCAAATACCAGAAGATAAA
CAGCGTTTGTTTTACAAGAATCGTTTAATCAATTCAAATCACGTGTTCGA
AATATTGCAGTGGTCGCCAGATCCTATAAAAGTAAACCTGGCTGTTCAGA
TAGATGATNTGTGTTCGAAATATCGCAGTGGTCGCCAGATCCTATAAAAA
TAAACTTGGCTGTTCAGATAGATGATAATGAGATGGAGTTATTGGAGATT
ATTCATAGATTTGAGATAAGTCGAATACGTTCAATTATCATCAACAGTCC
TAGTGATGGTTCGGTCTTGTTTGATTTACCGCTTTCTAAGAATGGCAATA
TACCCTTAGATATGATATATGAGTGGATCCGAAAGGAAAACCAGGATCTC
TCAATGAGTTGCTTATATCTGATGCGTAATGAAGAAGAATTTCAATACGA
TTTCAATCTTTATAATCTTTTTGTAGATGATGAGAATCGTTTCAGTGAAG
ACCTTTGTATAACATTACTGGTTAGNTTGTAGATGATGAGAATCGTTTCA
ATGAAGACCTTTGTATAACATTACTGGTTAGTCCATCTGACAAACAAGAT
GCTCCGAACGTGGAtagattttgtaaaaaacacggcttgaaatatttcaa
agaagTTCATATCAATTTTTTGACTGGAAAATTCACCGTTGATGTGATTT
CGAATAAGATTTCGACATTAAAGGAGGTTAAAGATCACATTCATCAATTG
AAAGACATTCCGCAACTCCTGCAAGCATTATATCTTGAAAATGCGGCAGA
ACTCAGTGATGAGACAAAGTTAGTTTGAATCCTTTAATGAATCGCCAATC
TATTACTTTTACATTGATAGTAAAACAAGCGAAGGAGATTGAACTATGTT
TACATGGTAACATACTCAATGGACAATTGAGAGTGAAAGTTTTGGTAACA
GATTCCATAACTCGATTGAAAGAGATCGTAAGCGAGCACACAGACATTCC
TTCACTCTTGATCAATATTCATAGTATATATGGAATCACGCAGGAAAATA
TTTCTCTATACGATTGTTACTGGGAAGGTGAAAACCATGACCTTATCAAG
GTTAGTAAACGTGTTTCAATCTCGCTGACAGACCAAGAAGGAGAGACGAG
AAAGATCGAGTACGGAGTAAATAATTTGGAGCTTGATACTGTCGAGAACC
TTATTGAGGACATAAAACGTGATAATTCTCATTGTGGTGttccatttttg
aagaaaaatggtATCAATAAAAAAACTCTGTTAAGAGATGTTGGGGATAc
tgaatttttatttgttgTTAAATCTGCCAACTCTTCGAAATGTCTTATTG
CTTAGTAGACTGTTTTCTGTATAGTCTTTGGAAATAAAGTAAACATAAAA
TTATGTTATGTTATATCATGAACATGGTTATATTTATACgtaaatacacc
tttcccgaattgttatttaggctttttgatttttttgttttaatgtttgg
aTGTTTCTATTTGGTTTCATAAAATTGTATGTCGCAaaactaaacaaata
aaaaaagaaataagagaAAAGCACTTCCGGTTCttgagttattttgattt
gaaatttctttataaacaatagaattacatGGAAACGAGACCGGGCtgta
tattttaatttttataagggATTTCACCGTGAacaaaaacagtcataaaa
attgatagaaagaaGCTATTGAGCTCAATTTTTTAGCATGGACTTGTCTT
TATACGAGGAATAcaaatatatagttttcaatatgGTTTTAAGACCTTCG
AAAAATACCaaacaattcgggaaaggtgtatttgcATTCCCACACCCTTG
TCTATCGGTGAGCATACCTCaaagctgaaatgcaaaaaaaaacttgtaca
gCTTTTCTAAGATGCTGACCTTTTTAAgcttacttttaaagctgtttaag
ctttcttagaccaaagattacaaaaaattgtaatttttgagCCAAATCAA
TGTTCCAActtaaaaattagaaatttccaCGAGCCCAAAGACAATCAAca
aaataagcataaattaaggctgaaaatgagattttgctaatAGTCCATGA
GCTGGAGGTCAAAATGGGCTCAACGAGTGCACCGGACAAATTATATATGA
AAAGTTTCCAAATTTTATGTAGAATAAGAATTTCGAtgttagcaaggtca
aattAAATGGAATAAGGATttagtgacgtcacaatgacaCCTGGTGAAAA
AAAAAGGTGTGAAAATTAGTCAGACCAAGATTCTACTTTTTGGGAAATAT
CTCGGGAACTAAAATTGGTATTGCTACGAAATTTGGAGCATATGTTCATA
ATGAGGTGACAATtacattcaaagaaaaaaaactgaaaaaaaatcattta
tgaCGTCCCCAAGGCGCgccgaaattgaaaaaatgagaaaaaaagataaa
ttttgcCTAAATTTCGATCAAAAGTTTGTGTTAACTTGGCCTGTACCACT
CAAAATAcgagaaaaacacaatttaccACCTATAATCTCATGTTACGAAG
AAAATACTTCAAAATAAAGTATTCGTTGGGTTTTCATGGGGCGCCAAagc
atcaaaaataatttacgCTCGTTTTGATCTGTATATCTGACCTTATGACG
CCAGTAAGGGGcgccaaaatagaaaaaattcaaaatcttgcCTTAAACTT
AATCAAAAGGTTGAATTCACCTGACCTTAGAGAATTTATCACTTACTTTG
TTAGAATTTGAAGTAATTGCTCCATAATGATTGATTTATTGTTCTTATGA
GGCGCCAAACCTTCAAAAACATTACGCTTAATTCGCTCGTAAATCAGAAT
CTTCCTAATTTTGGTTAATATTcagtaatgtcagaaatttttAAGCTATA
AGTAAAATCTTATGAAATACTagattaaaatgtaaaatttaggAATTTTG
AAACTTATAAAGGTTAGTTAAACTTGGTAAGGGTTAGCAACAGCTatttt
gtaaaagtaaaaatggaaaattagCAGAGGTTTCAGATTTATTAATTGTC
CTCGATATCACTCGATATCGACATTCTTTATCACTTTCAACCTCTTCGTC
GTCTTGATCGTTCTCTTCATTATCTCGATTTGCACAACCACACGCATCAC
AGCATCACATTGCACTTTACAGTCACAGGTTACGAGCGTCAGGACCTAAA
AATAAATCGATTATTAATAAttagtaaaataaaataattttgatttcaga
taTAAGGgctttctagaaaaaaattttccttttgctAAACACTGAATAAG
GCTGGGNAATTTTGAAACTTATAAAGGTTAGTTAAACTTGGTAAGGGTTA
GCAATAGCTattttgtaaaagtaaaaatggaaaattagCAGAGGTTTCAG
ATTTATTAATTGTCCTCGATATCACTTTCTTCATCACTTTCAAACTCTTC
GTCGTCTTGATCGTTCTCTTCATCATCTCGATTTCCACAATCATCACAAC
CACACGCATCACAACATTCCATTTCGTTGACCTTGCATGGGCAAGTTACA
TCACATTGCACTTTACAGTCACAGGTTACGAGCGTCAGGACCTAAAAATA
AATCGGTTATTAATAATtagtaaaatgaaataattttgatttcagataTA
AGGGCTttctagaaaaaattttttttctgaatttaagggtttaataagaa
cataaaaTGATAAGAAGTGACTCTTTCCAGTTTTAAGTGACACTTAATTG
TCAGCAACTATGACATGGCTGTGACAAGTATGAATAACATTACATCAtca
acagccaatcaaatcatcAAGATAGGGTTAGAAAAATATCATAACTTGAA
AAGAGACGCTCACATTAAATTAATTATACTTATGACAGATTGCATCAATT
ACCCGTAATTGTATCCTTTGTTATCTCATGAAAATTTACTAGAGGTAGAA
TAGTATACTAAAAATTACCTCAGTCAATGCTGGATTGCAAGTCATCCAAT
TAACGAACAGACCACCATCATCNTGTAATTATATCCTTTGTTATCTCATG
AAAATTTACTAGAAGTAGAATAGTATACTAAAAATTTCCTCAGCCAATGC
TGGATTGCAAGTCATCCAATTAACGAACAGACCACCATCATCGACTCCCC
AACCATGATCGGATGGATCACACCTGTCAATCCAAGGATCAAGACACATT
CTCCATATTCTTGCTTGATAGTTTGCACGTTTGATATGTTGGCGTAACAC
GTTTTGACAGGGTGGCAATGATTCTGATGATACTTTACCATTCTTCCTGC
AATAAATGTTGTATCTCAGGTCATCAATCGATATTCCCAATTCCAAAGAA
TCTTTCTTCCCATACATATGGCAGACAAAGGCTTCGAGGATCGACACATT
CTCTTCACTTATGTCCCAAGTTGTGCCAAGTTCTGCAAAGGCTTTGACGT
ACTCACTTTTCTGGATCATGACTTTTAGTGGTTTGATCTTGCCACGTCCG
GAAAATGCACTAATCGAATCGCAGCCAGTAAAACAATGAAAACCAGGTAA
GGCTTGCAATAACATTTCTTTGTTGAATTTAGAGTCGTCAATGCGCGTGA
AGTACGTTTCGCAGACCAGATTCAGATCGATAAGCCTTTTGTGATCTCCA
GATCCAGTGAGGATGAAAATGTTACAACCAATTGCATGTAGATTTGAAGC
AGCGAGAATGAATACATCTGTATCAGGGGTAGAGATAAtgatgttttgat
attttgagcTTGCGTCATTTGCGTGCAACAGCATTCGTGTGTCGGCTTCT
TCTTGATTTGAGTGCAAACGGTTGCAGATTGCCATTTGGTGTTTGGTGAA
TTTCCACGTCTCAGTTGAATCGTTGACATACATAGTCTTGTTATCCAAAA
GATGTCGTTTTGTTTTCCAATCATTCAAGAAAAATGTAACCAACTTATTC
TTGAATTCACCAGAAGAAAGAAGCTGACCCCACTGTTTGATTGGTGCTGT
AGAAACGATTTTCTTTACAATCATTTCTCCAGTAGATCTTCTTTGACGTT
CGATGTCTTTGATTGAGGTGTCGAAGTAGACGTCAAATACGACATCAAGA
CGAGATGCTGACGGGGAGCCATTGACGATTGCTTTCAGGAGCTTagttga
aaattggtcaaatgtCAACCCACTGGACTTGAGTTGTCGAACATAAGCCA
TACCATCAACGATGAAAGCATGGTCTTTTTGTAGCATTTCAACTGGGACA
GTATCTCCTTCAACAGTGTGTAATAATTTTGACTTTGCTGTTTTCTTCAG
GGTACCATCTGGCTCCGATAGCGAGAGTGGTAATTCAATGAGAGGGAACG
AGAGCAACTGTTTGAGATCAACCACTCTCGTTTGGGCAATAATCGCGATT
TTGGCAAAGAGCTCTTTGGTGCTTTCAATCGCAACCAACCTTGCTTTGTG
TTTGGCAGCTTTTGATAGGGGAATATTTGAGAAGGTTGGAAGTTTTTGCT
TCTTCATGcgatcaaaaattgatagcGTGTGACCCTCTTCCAGACGTTGT
TTGTTAAAAGTGACCATAAGCTCCTTACCGATTCCTTTGGCTGAAAGCAT
TTTCTCTGCAACAACCTCTTCCAATTCAATTCCCCTCGAGATTGACAGCA
ATGGCATACCAGCAAACGGATGGACGAAGGTCTCCTGTAGGATTGAGAGG
ATCGACTGGACAGCATTTTCATCTTTTCTAATTCGAGCTGGTGAAAGATC
CTTGTGTTTGTGCTTCTGACGATGCTGGTGAAAGACTTCACGAAGGGATG
CTCTGTACGTAGCGTTAAGCTCCCATCTATGGACTGCTCCTATGTTTGTT
GAGAAGCCAGTTGTGTCTTGGTGTCTTGGTGTCTTTGTTTAGGGTCATCT
CAATCACCTTGTCGGTCTCCACTCTGTTGAAAACACCGTCACTAATCTGT
GCAGTAAAATTGCCAAGAAGAAACTGCTCGTATATTTCAGGAAATTCGGT
TTCCAAAGCAAGCATATCGCCAAGCATCACTGAAAGGTACCTTGCGTAAT
TGATGTTGTCGTAAGCGAAAGCAAATGGGATGATTTCGCGGATACATTCA
AGAAGAAGATCCCACAAACCAGCTCTGCAGGCGTAAATTACATTCAAAAG
TAGTTCCACCATTTCAATGTAGCTAATCCAAAATTTCGGCAAGCTGAATT
CTGAGGCTTTAATCTGATCCTTAAGGTCAATGTAATTGTTGAAATACTCC
TCGATACATGTATCTGCGTCTATGGTATCGTAGATTTGTTTGTCGATCTT
GTCCAAGACCAATTCATTGCAAGCCTCATCAACTCGACCACACTTTCCAC
TTTCCACCAATTGGTCAATTAGAAGGCGATCGGAANNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNATTCATgtgataatataccaaattgtcaac
cttgaaattgtcacatttagttacagtattgctaaatatttacaacactt
tccagcaaacttttttgtgaaatttgcgtcttgataaactaaactccatg
acatttgtatcattgatcgttaaatcacatcttggaacaatagagttcct
tggttcaattattgcaagaatgttaatctttgttcatattctcattatgt
gcaacagtatcattacatcattgccagcaagttacattgtattgtcagat
ttagaggtcgtcaaactttgttgaatttgtaatcctggcacctgaatgtg
aaaggaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTGCCATGCATATATactgagccattaaagaagtttacgggaacgtacaa
aaaggaccacagggtacgtacaataaggtacactgggaacatacaataag
gttgacaagaaacatacaataaggtttacggggaacatacaataaggttc
acagggaacgcacaataaggtacaaggggaacgtaccttatagacctttt
ttcaaagaggacgtcctgttgaataattatgtagtccagcagaaaaacaa
tgataaaaccatgcataattattacaatatgcatgatacagtaattatgc
atggctctatcattgtttttatggctggagtacataattattcaacatga
cgtcctctttgaaaaaaggtctatatggTACAAGCGGaatgtacaataag
gtacacgaggaacgtacagtaaggtacactgggaacgtacagtaaggtac
actgggaacatacaataaggttaacggggaacatacaataaggtacactg
ggaacatacaataaggtacactgggaatgtacaataaggtacactgggaa
catacaataaggtagacgggaacataaaataaggttcacggggaacctac
aataaggtacaacttgtatggattccacgaaatctcgcgccgaagatatt
tttccgtgcagcaagcctcacgccaagcaaaatttcttttgtaccaacgt
tcaatttttcaataagggtgcaagatgggaaaagaggcgcatgcgccaac
ataaATAATAAATTGACGCGAGCGCAAGCGAGTCAAaacaaatttagcca
aatggaagctaaaaatcgatggattatggagtcattcacgccgagctgga
ttattactttacgccaactgaaaatcaaacaatctttgtaagtaccctta
cgccaatgcgccaaaaacatttcagttgtacgccgaagaaCTTTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNAATGGGGCACTGAGAAGAgtgcaagctt
ttccaagttttgacgATTAATATCTAGatggaaatcagaaagaaatttat
gctcACCTTCTTCTCAAGTCAAGATTGGAATGGATTGGATTTCCAtgtgt
ttcagcttctttctccacccttcttcttcaaatattttttccccgctaaa
tcttcgcgacgatttttagtcacgtgactgaagagcctagtcataatgtg
cagcacgaataaagaaaacattaacatcgaAAATGGAAGAAACGGAAAAA
GGCCGTTTTAATAAATATTCCCCTATAGTAGGGAAATATTTAAAAAGAGT
GTGGCCCTTTAACCAATTAGTATAAATATGGGAaaatatcaggggtggtc
agagcaaatttttcaaaaaatgagctagaatgctaagcaaccccagccct
gaccagagttataaaaaattgtattatatttttcttattagGGTTGCGAG
TTTTTGACACAGGGTAATATTCCCTCGCTTCTCCTAGTTCATCTAGGAAG
TGGGAAGTCTGATCTGTGTAACTTTTGCTACTTGAGTCGTTCGCGGTGGA
AATCTGTATTCTGTAGTCTTTTTTGGGCTTTGTATAAATATGTTCTTCGA
TAGAATTCAAAATTGCTCGGGGGCATTTAATCTAGAAACTGACGTACGCG
CGGACAAAGATCTAAGCAcaaaaattggtctttttgttTATTCCAAAAAC
AGATCATCtaaatattttgcctgaaaaaaaccTTCGTTTTTCTCGCTTTG
CATactcttacagtgcactttaAGCTCAGCTTGGCTTAAAGGTTGAAACA
CGTATGTTATTGCGATGCTAGTAATATGAGCTTTCCCGCTCAcatgattt
tgttttgttttgatcaaaTATTAAGTACGTTCATGGAAAGAATTTTAAGT
TAAGAAGGAACTGTCTGGACGTTGTTactttcttgttattttttttaatc
aactgATATGTCTCCAATGCTTCTTATTTTGTCGAACATTTGAAGGTTTT
GCTGTGCTATGTTTTTCATGGCTCGTTTTTAACAATCTAGAAAACTCCGT
CTTATTtcttaaagctttaaaatctcAACCATTTCCATTGGTGGATTGAT
TGAATGAAAACGAATTTTAACATATCTTAAAAGTTTTCTCTCGTTTAAGA
TCACAATCTACGATGCCCCGCTGCTTCTCTTGAATACAAATGGTGAAATA
ATATGCCCCGCATTCAAAATGCTAACGAAAGAACTGCATTACTAGCTACC
CAAGAAATAGCTTATGACGTGAAGCAATATGGAAACCAAGTCAAGTTAAG
GAGTAGCGTCTATGCACACACCAATCATTATATCAAGCAAAGCAGACCGT
TTTTCAATGGTAAACGTTTGTGTGGATATGTGTATTTTCAAGGAATGAGA
TGGATTTTAGCAGTCCTTTTCCTCGTCAACTTGTTTTGTTTCGATAGCTT
GTACGTAGGTTTAGTTATGGACTTTTGTAACTTAGTATTTTTGTTGATCT
TCTTGCAACACATGTGTGTTAACTGTTGCACGATGAGGCTAGTTCGTCAA
CAGCCTGTTATCCCAGAACAAAAATTAAGTAATAATTTCTACAAAGTTTC
AATCGTTGAGATGACTGGAGTCTTTGCGGTCAATTATCAACAAAATATCG
GCGCGTTGAAATTGAACGAACAAGAGGTCAAAATGCAAGCTTTTAATAGC
GTTGCTGAAATGTTTATGAATCATGCTCAGAGATACTCCAACATCTGTTT
CCTTGTGGTGATATGTATGTCAGGAAACAGTGCATATTTCACTTATCGCA
AATGGGGTGAGTTGGGATTGAATCAGCAGTTTATGTTCATGAGAAGTTTA
TTTCGATGATTGTAtttacttttgttttattttatcatAGCCTCTTGAAA
CCAATGTATTTGACACACACACAGGTTTTAATCATTGCCTCCATCCATCA
CACACGGGCTTTGATTACTGCCTCCATCGAGTTCAGTGTCTGTGTCCAgc
tccaaaactctaccgccacttttttcccgtaaaccgccctgacgccctaa
ctctttc

Coding sequence (CDS) from alignment at scaffold_313:568881..583787+

>TCONS_00058730 ID=TCONS_00058730|Name=TCONS_00058730|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_313:568881..583787+ (Clytia hemisphaerica)
aacaataTAAAAGTAGATTTTGGTGATGATGTTACATCTATATTTCTTTG
GCATAAAACAGATACTCTTCGAAAGCTGAAAGAATGTATTAACAAACGTT
TCAATGTTCCAATAAATGATCAAAtaataaaacatgaaaacattATTGTG
GATGAAGAGTTATTTAGTGCAATCTTTCGGAACCGATTCAACAGAAATGt
tgttttcaaagttgaaattccTGATCCAGTAATTATCAAGGGTAGACGTG
CTTGGATTTCAAAGCAAAATCGAGTCGGTGAAATTGTAGTTCCTGATCCT
GATAAAATAGCTATCCAATTTCAAATCGGGGACCCTGAACGATTAGTTTT
AGACCTTAAACGTGACATAAAATCGGCTCTCCCAGTAGAAAGGAGGTTGT
TTCTGCTAAACAATTGTTTTATATTGGATGATGGATATGTGATAGCAGAT
TTATTTCTCGACTTTGAAGATGTATTGCTAACTATGCTTGATAGTAAAGA
AAATATTCAGCTTATCCTTTCAAAATGGGCTATACCGTTAGTCGATATAC
TGATTCCAAGGATTGATTGTGAAGATCTCCTCATCGAATATCCTTTACAC
GAAATTGGAGACATGCGCATTAGTGTCCTGAAAGATTGGATTGAAGCTCG
TTTCCATATCCCTGTAGAAGAACAGGAACTGCATTGTGAAGGTAGGCTTA
TTGAGAAGCATGGTATATTTCCTCTAAAACTTACTGACAggttggcccct
ccagaaataATGCGTTTGCGTGTGTACTCAACACCAAATCATGAATTGGA
ATCTATTTACCAAGAGAATAATATCAGAACGTTGATACCAATTCATGTCA
CCAGTTTTGATACTGACCACTATTGGGTTTATCATTATCGTGAATGTCAA
GATGTGAATGAATTTGTTGAAAGTAAGCTGCAAATACCAGAAGATAAACA
GCGTTTGTTTTACAAGAATCGTTTAATCAATTCAAATCACGTGTTCGAAA
TATTGCAGTGGTCGCCAGATCCTATAAAAGTAAACCTGGCTGTTCAGATA
GATGATNTGTGTTCGAAATATCGCAGTGGTCGCCAGATCCTATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036994	XLOC_036994	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058730-protein	TCONS_00058730-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058730-exon-scaffold_313-1491911889:568881..570880	TCONS_00058730-exon-scaffold_313-1491911889:568881..570880	Clytia hemisphaerica	exon
TCONS_00058730-exon-scaffold_313-1510915933:568881..570880	TCONS_00058730-exon-scaffold_313-1510915933:568881..570880	Clytia hemisphaerica	exon
TCONS_00058730-exon-scaffold_313-1575043694:568881..570880	TCONS_00058730-exon-scaffold_313-1575043694:568881..570880	Clytia hemisphaerica	exon
TCONS_00058730-exon-scaffold_313-1491911889:582880..583787	TCONS_00058730-exon-scaffold_313-1491911889:582880..583787	Clytia hemisphaerica	exon
TCONS_00058730-exon-scaffold_313-1510915933:582880..583787	TCONS_00058730-exon-scaffold_313-1510915933:582880..583787	Clytia hemisphaerica	exon
TCONS_00058730-exon-scaffold_313-1575043694:582880..583787	TCONS_00058730-exon-scaffold_313-1575043694:582880..583787	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_313	supercontig	scaffold_313:568881..583787 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.917333	0.509127	0.231866	0.182193	1.30603	1.89447	0.880404	1.58158	1.08642	0.937907	1.25495	0.927296	0.400259	0.187972	0.371044	1.18834	2.26949	1.02336	0	0.612633	1.25131	0.739945	1.7613	1.69818	1.46025	1.19012	0.616788	0	1.94683	1.57054

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-rel_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058730 vs. Swiss-Prot (Human)

BLAST of TCONS_00058730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058730 (transcript) - C. hemisphaerica