TCONS_00058857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058857
Unique NameTCONS_00058857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058857 ID=TCONS_00058857|Name=TCONS_00058857|organism=Clytia hemisphaerica|type=transcript|length=1947bp
TGTTATTCTGCAACATACAGGCGAAAATATCTACGTTATATACCTTTTAA
GAGCATCGCGGGCAGACTCAGCGCTCATATATAGTACATGTAACAGACTA
CGAAAACAAACTCATGTGCTCAAAAATATCATGGCGTCGAACGAGAGCAG
ACACAAGAAAGAAcctaaaattcactttttgaaatTAGCATTTAAAGATG
CAAAGCAAATGTCTCAGGGAAAGCATTCGTGCTTGGAAGAGGTGAAGCAC
ACCATGAACATTTCATTAGCTCCAAAATTTATTGGAAACTTGAAATTGGG
GTTGAAAGAAGAAAtgaataaatttctttttgtgtACCAAACGAAGCTAA
ATGGTGTCCCACTTGCTTATGATAGAATCCAGATCACCAAATCAAAAATC
ATTGATGACCAAGAATTCCTGAATCTTGAAATATGTGTCAATTTTATAGT
ATTTCAACCAGAAATATCCAAAATTCTACGAGGCTGTGTTAATAAATTAG
GTGATCATTATTATGGGTGTTTGTTTCATAATTGCATTAATGGAATGGCT
TTCAAACCAAATCCAAGCAAATTACCAACAGAGGAGATAAAGAATTACTT
CAAGAATATAAAGTTGGGAGATGAAATcttaataaaaatttcaaagattc
aAACAGAGCATGAAGTGCTATTTGTAAAAGGTGGTATATGGACTGACAAA
CGATCCAGGAAATTATCAAGGAGCGAACCAACAGAAGATAGCTTGGGTGA
CCCGAGCGTGAAATGTGAAATGTTAGAGGAAAATAACAACGATCAATCGA
TTATGGAGAGTTTAACAACTACTATGATGACATCaccgaaaaagaaaaag
aagaaaaaattgaaagacgTTGATAGCGACAGAGAGACCACTGACAATCA
CGATCAACAAATTATAACTAATGGACATCATATATTACCAATAAAAAGTG
AACCTTTATCAGAAAGTGAATATATTGCTTCTCCTAAGAAACGAAAGAAG
CGTAAAGCGAGGGATGATTCTATTTTAACTGACATTGATGGGGATGTCGA
ATCTTCATCTTctccaagcaagaaaaagaaaaagaagaaacggaaaatca
aaactgaagaagaggattaattttgtttttatctttgatcatttgattgt
ttttatgatTGGTCATCAAATATTGTTGTTTTAGCTATATTTCTCAAGCC
CATGATTTCCATTGGAAGAGCATATGATCATAAATCTACCTATTTACATT
TGTACTGCAACGAATGTCTGAAAATTGGATCATGGTGATTGACTGATTAC
AAAGCtctttttgtgattttcaggTGTTCTTTTTTGCTGTTGCTTAGAAA
TTAAAGCGTTTTATCCACCGTTATACACGTTATTATTGAAAGATTCCCCT
TAATCTCCTTAAACGAATCGGTCCATTATGCTGAAATAAAAATCTACTTG
TTTACTTAGATTATCAGGAGGCCCACTTTTATCGCATAAAACTAGCTTGC
TTGAATTTTGAAGACGAAATTATACTTTTTGCCGTAGCTTTGAAACAATT
GTAGCTTATAAATTTATGGGCTCACGAAAAGATTGCACTGTTGAAGAGgt
gtttttcgatttttttgaaattttgattttcgtacAAGAAAAACGGGTGG
GGTAAAAGAAAACAGGGCATAATCCAGACCTTTCTGTACAGGACCAAAAA
TTGAATTCATGTAATAAGAATGTTCCTTTTTCTGGTTTCTTCATTCGATG
CTGGATTTCTTTTTTAGGTGTTAAATTTTTTGGCATTGAAATATTTGTCT
CTTACTAAAAATGGTTTTTGTATAGACTTTGTATATTGGTAGAATGTTAC
ATAGGTTAGCAAtactttatattattttttaccATACTTTATACTTATTA
TTTGCGCAAAATATTTCGTTACCCTAAATATTGGAAGCAAAAAGCCC
Run BLAST on NCBI

protein sequence of TCONS_00058857-protein

>TCONS_00058857-protein ID=TCONS_00058857-protein|Name=TCONS_00058857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
VILQHTGENIYVIYLLRASRADSALIYSTCNRLRKQTHVLKNIMASNESR
HKKEPKIHFLKLAFKDAKQMSQGKHSCLEEVKHTMNISLAPKFIGNLKLG
LKEEMNKFLFVYQTKLNGVPLAYDRIQITKSKIIDDQEFLNLEICVNFIV
FQPEISKILRGCVNKLGDHYYGCLFHNCINGMAFKPNPSKLPTEEIKNYF
KNIKLGDEILIKISKIQTEHEVLFVKGGIWTDKRSRKLSRSEPTEDSLGD
PSVKCEMLEENNNDQSIMESLTTTMMTSPKKKKKKKLKDVDSDRETTDNH
DQQIITNGHHILPIKSEPLSESEYIASPKKRKKRKARDDSILTDIDGDVE
SSSSPSKKKKKKKRKIKTEEED
Run BLAST on NCBI

transcript from alignment at scaffold_314:5452..14715-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058857 ID=TCONS_00058857|Name=TCONS_00058857|organism=Clytia hemisphaerica|type=transcript|length=9264bp|location=Sequence derived from alignment at scaffold_314:5452..14715- (Clytia hemisphaerica)
TGTTATTCTGCAACATACAGGCGAAAATATCTACGTTATATACCTTTTAA
GAGCATCGCGGGCAGACTCAGCGCTCATATATAGTACATGTAACAGACTA
CGAAAACAAACTCATGTGCTCAAAAATATCATGGCGTCGAACGAGAGCAG
ACACAAGAAAGAACCTAAAATTCACTTTTTGAAATTAGCATTTAAAGATG
CAAAGCAAATGTCTCAGGGAAAGCATTCGTGCTTGGAAGAGGTGAAGCAC
ACCATGAACATTTCATTAGCTCCAAAATTTATTGGAAACTTGAAATTGGG
GTTGAAAGAAGAAATGAATAAATTTCTTTTTGTGTACCAAACGAAGCTAA
ATGGTGTCCCACTTGCTTATGATAGAATCCAGATCACCAAATCAAAAATC
ATTGATGACCAAGAATTCCTGAATCTTGAAATATGTGTCAATTTTATAGT
ATTTCAACCAGAAATATCCAAAATTCTACGAGGCTGTGTTAATAAATTAG
GTATAAACTTACTTTTCAAATTTTGTTTTTCTCAAAATTTTAAACTTTAT
ATTTTACTTCACAGATAATTTCAATTTTTAACTGGACCCCAAACCTTCTG
CAACTCAACCAAATAAAAATAGAAGTAGATAAATTAGCTTGTCTGTATAG
ACCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCAGA
AAAACAATGATAAAACCATGCATAATTATTACAATATGCATGATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGCTAAGAAATATTTTGGCCTTTAAAG
AGCCTGGGGGCTAAAATTACCAAAATATTTGGGGGGACCTAGATTGTTGG
GGGGAACCTAGATAATCTGACTGAGACTCTGGGGGCTGTTCAGCTAATTC
TAAAAGATGTCTTATCGTACTATTAAATCGAATATAAAAAGCAAAAGATT
GGTTAACATAAATATTAATACAAGTAAAATTTAGTTTTCATTTATCAGTA
CCGTACTCGCATATATTTTTTATTGACTTCTCTCTACACGTCTCTCTACC
TACAAGGGCGAGAGGAAAATGTTTTTGTTTTTTCCCCAAGTGTTAGGGGA
CCTAGCTAAATTGTTGGGGGGACCTTACTTTGTTGGGGGGGGAGCTAGAA
ACCTGGCTGAAGCTATGTCAATCTTCTAATCTAAATCTTAACAAAAACTC
TTTATTTGACTAGAGGAAGAATTTTCTTGTCATTAATTTGATGCTAAAGT
TTGTCATTATTTAACATAATATTGTCAGTTAGTGAAAGTATAGCCTGGGA
ATCCAAGCTCAAATTATAGAAAAAACAAAAAATACCCCACCTCACAAAGT
TCTAAGATTATAGAGCTTGGTGCAAGTAGATTAGTCTGACACANCCTCAC
AAAGTTCTAAGATTATAGAGCTTGGTGCAAGTAGATAAGTCTGACACATA
ATGTTATAACAAGACGATGTCAATCGAACCAATCGAACGCCGAATCAATT
GAACGCAATTGAACACAATCGAATAATTGCAATCGAATATTACCCAGGAT
TTGCCGTTCGATTGCTTCAATTACGTTTGATTGTATTCGAGTGCGTTCGA
TTGTATTCGATTATGTTCGACTGATTCAATAGTACTAGATTTTATTCACT
TTCGTACGGGACTTAAGCGCTCGGCCGCCCACGCTAAAAAGCTCTAACGG
GGTAATCCAATTTAATTTAATGGCAATCAAACTCATCGAACATAATCGAA
CGAAATCGAATGTAATTGACAATCAATCGAACCAATTGAATATAGTCAAC
TATCAATCGAACCAATCTAACCTTACTCGAACGCAATCGAACACAATCAA
ATATTACCCAGGATTCGGCCGTTCGATTAAGATTCGATTACGTTCGTCAA
TCGAATCGCAATTATTCGATCGCGTTCGATTACGTTCGATTGGTTCGATT
GCGATTTTTGTTCGAAGTTGTTCGATTGACACCGTCTGGTTATAAACAGT
CTGTGTGTGAACCCTTGTTGACAGACTTGCTGAACTTTGGAAACCCAGGC
AAACACACATAATCAACTCTAAAAGACTTTCAAAACTACTAAAAACCACA
TCAAAACATCAGCCACATGTTTATTTAGACTTCCAGCCAACAGCCATTTT
GTTTCGAAATGAATCTATGTTTTCTTTTTCATTTGTTTTCCTTTTTTTCT
GCAGAGTCAGCTTTTTCTTTTTGACTTGACGTCAAATACAAAACTGAACA
GTTGTCGTCTGAAAAATGCACAAAGATGGCGAAAAGATACCCTACAATGC
AGGAAGTGCCACCGTTTAGTCCATTATCTTTGTACAGAACTGCCACTTTA
CCAGATCCAGATATGCTTGTCATACAAATCAAGAAGTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGCATGTCCACACAAGAGAAAGAGATACCAAATGTATA
ATGTCTTCTTTTGAAATTCTAATCAACAAACGTCAATAGTACGACTTCAT
TATTACACCCGGGGGGGGAGGCAATCAAGGTAAATGGCCTACCAGACGTT
CGGCCCTTAAGGGTAGGTTTTTCATAGTTCAGCTAGTGCACTGTAAGGGT
AGGAAATTACAAAACTGCACTGAACTGCACTCTCAGGGTAGGAAATTGTG
ATAAAAGGCCAATTTATTGGTAAAATTGGCACAAAATTAGTCAATTTTAG
AGGAAATATTCCACATTTTCTTGGAAAATTTTGAAAAAGTGCACTGTAAG
GGTATCATTTTTCATGGAAATTCACTGCACTGTAAGGGTCTGATTTTAGA
AGCCAAATTTTGGCCCGAACGTATGGTTGTTTTCAGATCGAGTGCCCGCG
TTATTACACAAACAAAATACCAAAATGTACAAAGAAAAATTTCTTAGTTC
TTGGAAAAAGTTATTAGGTTAGCCCCCAGTCAACAGACCTAAACAAATAG
CCCCCCCCCCTGAGTAAGTAGCCCCCCCCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGCGA
AAAAAACTTTATTTAAAAAAGATCGTTGTAAAAAGTACGAGCGGTTTATA
GAGGCCCATGTGTCTTCACGGTGGCCTGCAAACCTGTAAAGCTTTATTAT
TATTTTTCCATAAATTATGCGCGCGCATCGAAATTATCAAAATGCGTGCT
AAAGTACTGCTAAGTAATACTGGCCAATCAGGCCGAACCTGCATTNAAAA
TTATCAAAATGCGTGCAAAAGTACTGCTAAGTAATACGCCGAAAGCTGGC
CAATCAGGCCGAACCTGCATTGCAGAGAAAAATCTCCCTGCAGGCGAGTT
ACCTGCGCCAAGCATTAAACAAGCAGCAAAAATATCATAAACTAGACTGT
GAACAAAGTTTAACGCTTGGATTCCCAGGCTAGTGAAGGTACTTTAATTT
TTGAAACGTCTTTACGTCACATAGATCGATTTGTGAAACGTCTTTACAGC
ACATAGAACGAAAGAAAATAGCAAAAGAACAAAGGAATTATTCATAGCCA
CCATTTCGCAACCGGAATTGTGATTTTGCGGAAATGGGAACCCTCATATC
AAATAAAGCATCTGCTGAAAATTTTGTTCTCCCCCAAAAATGCGAAAATG
AAAAATGAAGAAGCTTTTGTTTTCTGATCGTCTTTTTAATCTGCCATAAA
GTGTTATAAAATTCCTTAAAGAAAGACACATTCTCCTACGAAGTGGCTTC
ATATAAATGATGCTGTTAAAAAGTATGTCATTTTATCTTAACAATTTCCT
AAACTACGTCACAACCACAGAGCGCTGGCTTTTAGTTTTATGACTTGTTC
TCACTCGTTTAGTTTTCGTAATAAAAAGAAAGACGTTATTGTAAACTTTG
AACATGCTTAAAATCGAGGTACTTCCACTAACTGATTGTGATAAATAAGG
AAAGGTCTCTACTGTTAGTTGGTCTACCGACACCTGCCCTGCCCTTGTGA
TGTGATGACCTTGACTGTTTATGATTAATAGGATTGGGGATTTTAACATC
AGACCAACTTTTGATATTGAGGGTCAGAGAATATAGTATTGAACGCAAAG
TTGCCAAACTTCGGAGGCTGCATGTTAATTGTTAATTTACTTAAAGCCCA
TTTTGTGTATGATGAAAACAACCACCAAAAAAATCTCAACATGAATTCTG
AATTTTTTGAAACCGTAAATTGGGGAAGTTGAAAAATCAGTGAACAATTT
TTTTCACAATCAGAAGATTGGGGAAACGTTTTTAAAAGTTGAAAGTTGGA
AAATTAGAAAACTCAGGAAAAGTTTTGCTAAAATTTACAATTTGAACCAA
AGCCCTTCTCTTAATCATGACTTTATGTTGAGTAATTAAAAAAACTCTTG
ATCAAAACAAGAACAAGAAAATGTTTTTAGTATATACAAACTTTTACTAA
AACATGTATATACAGGGAGGGGATGAATGGTAAAATAGGCTAAGATAGGT
GCTGGGTAAGTTCAGTTGGTACGGGTTTGTTAATTATGACCTTTCCAAGT
TTTTCTGAAGGTAACAATGACAACAAAAAGTCAAAATAGTCTTTTTAAGG
GTCAGAATTTCCGCTTTTTGGGTCTCTTTTAAGAGTTTGAAAGCCTACCT
TGGTTGGTTTCAGCTATTTGTTTCCTCACCAAATCCAAGGGTGACCGCAT
AGGACATCCTTCAAAACTAGTGATACCCCCACCCATAGTTTATTTTCTGT
AATTCGTTTCTTATTGACAGTAATGATCCAAAAAGTCTCTTTTTATGTAG
ATTTCAAAAACGGTTAAAAGTAGGGGTTAAAAATGAAGTCAATGAGAAGA
AAATGCAAAACTTGATGATTTTTTCTCCTATTTTGGCCTGCGATTATAAA
AAACCTAAAAAATGCGATAAAAAATTTCTAAAGCGAGGTTAAGCTCTATT
TTTTTTGCTTTTTGCTACAAAATACCATAGCTTCCCATAAAAATAGGTTT
TAGAGAGATTTGAAGACATTCATTTTTTGACATTTTTAAAATTTTTGGGT
ACGAGCTTTTTGCTTATAGCTTTTAGTTTGAATTGGTTGGATTCAGCTAT
TTGTTTCCTCATCAAATCCAAGGGCGACCGCACAGGATATCCTTCAAAAC
TAGTGATACCCACCCATAGTTTATTTTCTGTAAGTCGTTTCTTATTGACA
GTAATGGTCCCAAAAGTCTCTTTTAGTTTGAATGGTTTTTATTCTAGATG
ATTTAATAAAGCTCTCATATGCAAATTTACATTATCTTTGTTTTAGGTGA
TCATTATTATGGGTGTTTGTTTCATAATTGCATTAATGGAATGGCTTTCA
AACCAAATCCAAGCAAATTACCAACAGAGGAGATAAAGAATTACTTCAAG
AATATAAAGTTGGGAGATGAAATCTTAATAAAAATTTCAAAGATTCAAAC
AGAGCATGAAGTGCTATTTGTAAAAGGTGGTATATGGACTGACAAACGAT
CCAGGTAAATTAGCCTCCTAAATATCTTTAAAAGGTGTGTAACCCTTAGT
AGATTGCAAACTGCTCATCTTTACGAGTTTATTTTGACGGCTAACCGTTT
AAGAAAGAAGTTTTCGAAACCATTGCTTTATCCGCTGTCTGACACTTAAA
TTTGTTTTTTTATCAGTTGTCAATACCTTGTATCTAGTCCTATGAATTTG
AACTTTCTGTATTTCAGGAAATTATCAAGGAGCGNACATATCTAGTCTTA
TGAATTTGAACTTTCTGTATTTCAGGAAATTATCAAGGAGCGAACCAACA
GAAGATAGCTTGGGTGACCCGAGCGTGAAATGTGAAATGTTAGAGGAAAA
TAACAACGATCAATCGATTATGGAGAGTTTAACAACTACTATGATGACAT
CACCGAAAAAGAAAAAGAAGAAAAAATTGAAAGACGTTGATAGCGACAGA
GAGACCACTGACAATCACGATCAACAAATTATAACTAATGGACATCATAT
ATTACCAATAAAAAGTGAACCTTTATCAGAAAGTGAATATATTGCTTCTC
CTAAGAAACGAAAGAAGCGTAAAGCGAGGGATGATTCTATTTTAACTGAC
ATTGATGGGGATGTCGAATCTTCATCTTCTCCAAGCAAGAAAAAGAAAAA
GAAGAAACGGAAAATCAAAACTGAAGAAGAGGATTAATTTTGTTTTTATC
TTTGATCATTTGATTGTTTTTATGATTGGTCATCAAATATTGTTGTTTTA
GCTATATTTCTCAAGCCCATGATTTCCATTGGAAGAGCATATGATCATAA
ATCTACCTATTTACATTTGTACTGCAACGAATGTCTGAAAATTGGATCAT
GGTGATTGACTGATTACAAAGCTCTTTTTGTGATTTTCAGGTGTTCTTTT
TTGCTGTTGCTTAGAAATTAAAGCGTTTTATCCACCGTTATACACGTTAT
TATTGAAAGATTCCCCTTAATCTCCTTAAACGAATCGGTCCATTATGCTG
AAATAAAAATCTACTTGTTTACTTAGATTATCAGGAGGCCCACTTTTATC
GCATAAAACTAGCTTGCTTGAATTTTGAAGACGAAATTATACTTTTTGCC
GTAGCTTTGAAACAATTGTAGCTTATAAATTTATGGGCTCACGAAAAGAT
TGCACTGTTGAAGAGGTGTTTTTCGATTTTTTTGAAATTTTGATTTTCGT
ACAAGAAAAACGGGTGGGGTAAAAGAAAACAGGGCATAATCCAGACCTTT
CTGTACAGGACCAAAAATTGAATTCATGTAATAAGAATGTTCCTTTTTCT
GGTTTCTTCATTCGATGCTGGATTTCTTTTTTAGGTGTTAAATTTTTTGG
CATTGAAATATTTGTCTCTTACTAAAAATGGTTTTTGTATAGACTTTGTA
TATTGGTAGAATGTTACATAGGTTAGCAATACTTTATATTATTTTTTACC
ATACTTTATACTTATTATTTGCGCAAAATATTTCGTTACCCTAAATATTG
GAAGCAAAAAGCCC

Coding sequence (CDS) from alignment at scaffold_314:5452..14715-

>TCONS_00058857 ID=TCONS_00058857|Name=TCONS_00058857|organism=Clytia hemisphaerica|type=CDS|length=3357bp|location=Sequence derived from alignment at scaffold_314:5452..14715- (Clytia hemisphaerica)
GAAATTATCAAGGAGCGAACCAACAGAAGATAGCTTGGGTGACCCGAGCG
TGAAATGTGAAATGTTAGAGGAAAATAACAACGATCAATCGATTATGGAG
AGTTTAACAACTACTATGATGACATCACCGAAAAAGAAAAAGAAGAAAAA
ATTGAAAGACGTTGATAGCGACAGAGAGACCACTGACAATCACGATCAAC
AAATTATAACTAATGGACATCATATATTACCAATAAAAAGTGAACCTTTA
TCAGAAAGTGAATATATTGCTTCTCCTAAGAAACGAAAGAAGCGTAAAGC
GAGGGATGATTCTATTTTAACTGACATTGATGGGGATGTCGAATCTTCAT
CTTCTCCAAGCAAGAAAAAGAAAAAGAAGAAACGGAAAATCAAAACTGAA
GAAGAGGATTAAGTGATCATTATTATGGGTGTTTGTTTCATAATTGCATT
AATGGAATGGCTTTCAAACCAAATCCAAGCAAATTACCAACAGAGGAGAT
AAAGAATTACTTCAAGAATATAAAGTTGGGAGATGAAATCTTAATAAAAA
TTTCAAAGATTCAAACAGAGCATGAAGTGCTATTTGTAAAAGGTGGTATA
TGGACTGACAAACGATCCAGGTTATTCTGCAACATACAGGCGAAAATATC
TACGTTATATACCTTTTAAGAGCATCGCGGGCAGACTCAGCGCTCATATA
TAGTACATGTAACAGACTACGAAAACAAACTCATGTGCTCAAAAATATCA
TGGCGTCGAACGAGAGCAGACACAAGAAAGAACCTAAAATTCACTTTTTG
AAATTAGCATTTAAAGATGCAAAGCAAATGTCTCAGGGAAAGCATTCGTG
CTTGGAAGAGGTGAAGCACACCATGAACATTTCATTAGCTCCAAAATTTA
TTGGAAACTTGAAATTGGGGTTGAAAGAAGAAATGAATAAATTTCTTTTT
GTGTACCAAACGAAGCTAAATGGTGTCCCACTTGCTTATGATAGAATCCA
GATCACCAAATCAAAAATCATTGATGACCAAGAATTCCTGAATCTTGAAA
TATGTGTCAATTTTATAGTATTTCAACCAGAAATATCCAAAATTCTACGA
GGCTGTGTTAATAAATTAGGAAATTATCAAGGAGCGAACCAACAGAAGAT
AGCTTGGGTGACCCGAGCGTGAAATGTGAAATGTTAGAGGAAAATAACAA
CGATCAATCGATTATGGAGAGTTTAACAACTACTATGATGACATCACCGA
AAAAGAAAAAGAAGAAAAAATTGAAAGACGTTGATAGCGACAGAGAGACC
ACTGACAATCACGATCAACAAATTATAACTAATGGACATCATATATTACC
AATAAAAAGTGAACCTTTATCAGAAAGTGAATATATTGCTTCTCCTAAGA
AACGAAAGAAGCGTAAAGCGAGGGATGATTCTATTTTAACTGACATTGAT
GGGGATGTCGAATCTTCATCTTCTCCAAGCAAGAAAAAGAAAAAGAAGAA
ACGGAAAATCAAAACTGAAGAAGAGGATTAAGTGATCATTATTATGGGTG
TTTGTTTCATAATTGCATTAATGGAATGGCTTTCAAACCAAATCCAAGCA
AATTACCAACAGAGGAGATAAAGAATTACTTCAAGAATATAAAGTTGGGA
GATGAAATCTTAATAAAAATTTCAAAGATTCAAACAGAGCATGAAGTGCT
ATTTGTAAAAGGTGGTATATGGACTGACAAACGATCCAGGTTATTCTGCA
ACATACAGGCGAAAATATCTACGTTATATACCTTTTAAGAGCATCGCGGG
CAGACTCAGCGCTCATATATAGTACATGTAACAGACTACGAAAACAAACT
CATGTGCTCAAAAATATCATGGCGTCGAACGAGAGCAGACACAAGAAAGA
ACCTAAAATTCACTTTTTGAAATTAGCATTTAAAGATGCAAAGCAAATGT
CTCAGGGAAAGCATTCGTGCTTGGAAGAGGTGAAGCACACCATGAACATT
TCATTAGCTCCAAAATTTATTGGAAACTTGAAATTGGGGTTGAAAGAAGA
AATGAATAAATTTCTTTTTGTGTACCAAACGAAGCTAAATGGTGTCCCAC
TTGCTTATGATAGAATCCAGATCACCAAATCAAAAATCATTGATGACCAA
GAATTCCTGAATCTTGAAATATGTGTCAATTTTATAGTATTTCAACCAGA
AATATCCAAAATTCTACGAGGCTGTGTTAATAAATTAGGAAATTATCAAG
GAGCGAACCAACAGAAGATAGCTTGGGTGACCCGAGCGTGAAATGTGAAA
TGTTAGAGGAAAATAACAACGATCAATCGATTATGGAGAGTTTAACAACT
ACTATGATGACATCACCGAAAAAGAAAAAGAAGAAAAAATTGAAAGACGT
TGATAGCGACAGAGAGACCACTGACAATCACGATCAACAAATTATAACTA
ATGGACATCATATATTACCAATAAAAAGTGAACCTTTATCAGAAAGTGAA
TATATTGCTTCTCCTAAGAAACGAAAGAAGCGTAAAGCGAGGGATGATTC
TATTTTAACTGACATTGATGGGGATGTCGAATCTTCATCTTCTCCAAGCA
AGAAAAAGAAAAAGAAGAAACGGAAAATCAAAACTGAAGAAGAGGATTAA
GTGATCATTATTATGGGTGTTTGTTTCATAATTGCATTAATGGAATGGCT
TTCAAACCAAATCCAAGCAAATTACCAACAGAGGAGATAAAGAATTACTT
CAAGAATATAAAGTTGGGAGATGAAATCTTAATAAAAATTTCAAAGATTC
AAACAGAGCATGAAGTGCTATTTGTAAAAGGTGGTATATGGACTGACAAA
CGATCCAGGTTATTCTGCAACATACAGGCGAAAATATCTACGTTATATAC
CTTTTAAGAGCATCGCGGGCAGACTCAGCGCTCATATATAGTACATGTAA
CAGACTACGAAAACAAACTCATGTGCTCAAAAATATCATGGCGTCGAACG
AGAGCAGACACAAGAAAGAACCTAAAATTCACTTTTTGAAATTAGCATTT
AAAGATGCAAAGCAAATGTCTCAGGGAAAGCATTCGTGCTTGGAAGAGGT
GAAGCACACCATGAACATTTCATTAGCTCCAAAATTTATTGGAAACTTGA
AATTGGGGTTGAAAGAAGAAATGAATAAATTTCTTTTTGTGTACCAAACG
AAGCTAAATGGTGTCCCACTTGCTTATGATAGAATCCAGATCACCAAATC
AAAAATCATTGATGACCAAGAATTCCTGAATCTTGAAATATGTGTCAATT
TTATAGTATTTCAACCAGAAATATCCAAAATTCTACGAGGCTGTGTTAAT
AAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037078XLOC_037078Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058857-proteinTCONS_00058857-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058857-exon-scaffold_314-1575043694:14216..14715TCONS_00058857-exon-scaffold_314-1575043694:14216..14715Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1575043694:6962..7169TCONS_00058857-exon-scaffold_314-1575043694:6962..7169Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1575043694:5452..6690TCONS_00058857-exon-scaffold_314-1575043694:5452..6690Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1510915933:14216..14715TCONS_00058857-exon-scaffold_314-1510915933:14216..14715Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1510915933:6962..7169TCONS_00058857-exon-scaffold_314-1510915933:6962..7169Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1510915933:5452..6690TCONS_00058857-exon-scaffold_314-1510915933:5452..6690Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1491911889:14216..14715TCONS_00058857-exon-scaffold_314-1491911889:14216..14715Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1491911889:6962..7169TCONS_00058857-exon-scaffold_314-1491911889:6962..7169Clytia hemisphaericaexon
TCONS_00058857-exon-scaffold_314-1491911889:5452..6690TCONS_00058857-exon-scaffold_314-1491911889:5452..6690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:5452..14715 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.83715	3.87184	0.00153226	1.51221	0.326264	0.559551	0.672809	1.57972e-05	1.38346	3.53587e-06	0.0145504	6.0648e-10	4.472e-08	0	0.00542425	1.30636e-09	2.75624e-08	1.6688e-09	0.00139657	0.000227215	3.70384e-05	1.02067e-05	8.9971	3.06837	5.14832	0.870048	0.000321232	0.331054	2.79606e-08	0.0004712
Blast
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BLAST of TCONS_00058857 vs. Swiss-Prot (Human)
Match: RPA43 (DNA-directed RNA polymerase I subunit RPA43 OS=Homo sapiens GN=TWISTNB PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.913e-23
Identity = 57/186 (30.65%), Postives = 103/186 (55.38%), Query Frame = 2 
Query:  191 FKDAKQMSQGKHSCLEEVKHTMNISLAPKFIGNLKLGLKEEMNKFLFVYQTKLNGVPLAYDRIQITK--SKIIDDQEFLNLEICVNFIVFQPEISKILRGCVNKLGDHYYGCLFHNCINGMAFKPNPSKLPTEEIKNYFKNIKLGDEILIKISKIQTEHEVLF-VKGGIWTDKRSRKLSRSEPTED 739
            +  A  +   ++SCL    H  +I+L+P+++   + G++E+++  L  Y   L GVP+AYD I++      I DDQ  ++L I  +F++F PE  + L G VNK+   + GCL H C N  A  P P +L  E+ +     I +GDE+  ++ ++ ++   +F ++G +  +  S +  RSE +E+
Sbjct:   34 YAAACALVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFN--ASIPKPEQLSAEQWQTM--EINMGDELEFEVFRLDSDAAGVFCIRGKL--NITSLQFKRSEVSEE 213
The following BLAST results are available for this feature:
BLAST of TCONS_00058857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPA433.913e-2330.65DNA-directed RNA polymerase I subunit RPA43 OS=Hom... [more]
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