TCONS_00058863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058863
Unique NameTCONS_00058863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058863 ID=TCONS_00058863|Name=TCONS_00058863|organism=Clytia hemisphaerica|type=transcript|length=834bp
cagagaaagaagaagaaatcgaGAATGCATTGTTGAAAGCCATTGCTGAG
GAAGAACAAGAATTGCAAGgaaaagAAGGAGTGGatcaagaagaagaaga
ggaagaCCTAGATGAAATTGATTTGGACGAAATTTATGCAAAACATGACC
CCTTCTGGTGGTCCtccaaaagtaaacaaaaacaaaatactgGCCACCAA
GCTATCAGTGTGAATGCCTCCCAACCTAGGAAACCGGCTACACGCCGCTG
GCTTCGCATAAAACAGAAAGCTAAGNGCTTTTTGCATGGTGCGCATAAAG
TGGTCACAAAAGCTCAAGAGTACGCGCCACACATCTTGAAAGGGATTAAA
TATGGTGCTATGTTGTTAGGTAAGAAGAAGCGAGAATTAAGGGCATTGGA
AACGAGACAAAAGCATTTGAAGCGTCAAATCCAAATATTAGAAGATgaag
ttatgaaaaagaaaaagtagacAGATTTTCAAGTATTCGACATaatgtat
tttttttgtaaatttttatacCACTTTTTGTAAACTATTGATTGTTTTTC
CCCATGTTTTCTTCTGTGAAAATATATAGATTTCAAATGTGCAAGAGGAT
AAAACTTTCGGGTCCCTTAATATGcagtccccccccccctccacCTATAA
CCAAATAGCAATGTTCAAAATGAAAGGTACTAGAATTAAGGAAGAGTGAA
ATTTGTATATTTTCCTAAGAgttgcagaaaaaaagttgttATTGACAAAA
TATCCCTTAAAATTATAATGGTTTgataaatttatgaaaatgaaaataat
ctaATTCATAATAAggattaaaagaattttttNN
Run BLAST on NCBI

protein sequence of TCONS_00058863-protein

>TCONS_00058863-protein ID=TCONS_00058863-protein|Name=TCONS_00058863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
EKEEEIENALLKAIAEEEQELQGKEGVDQEEEEEDLDEIDLDEIYAKHDP
FWWSSKSKQKQNTGHQAISVNASQPRKPATRRWLRIKQKAKXFLHGAHKV
VTKAQEYAPHILKGIKYGAMLLGKKKRELRALETRQKHLKRQIQILEDEV
MKKKK
Run BLAST on NCBI

transcript from alignment at scaffold_314:51679..52799-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058863 ID=TCONS_00058863|Name=TCONS_00058863|organism=Clytia hemisphaerica|type=transcript|length=1121bp|location=Sequence derived from alignment at scaffold_314:51679..52799- (Clytia hemisphaerica)
CAGAGAAAGAAGAAGAAATCGAGAATGCATTGTTGAAAGCCATTGCTGAG
GAAGAACAAGAATTGCAAGGTATGTAAAAATATCTTCTTTTACTTATAAA
GTGTGTGTGATACAGGGGTGTATTTAAAAGTGTGTCACATTCATTCGAGA
GGATAAAACTGTCTGGGTTCCAACTAGTAAACTTTGTTTGAAAAAAATCA
CGGAGTAGAGTAATGGGTAGTTTGTCGAAAAAAAAGAACAATTGATTTAT
ATTTGAATTTAATTTTTTCAGGAAAAGAAGGAGTGGATCAAGAAGAAGAA
GAGGAAGACCTAGATGAAATTGATTTGGACGAAATTTATGCAAAACATGA
CCCCTTCTGGTGGTCCTCCAAAAGTAAACAAAAACAAAATACTGGCCACC
AAGCTATCAGTGTGAATGCCTCCCAACCTAGGAAACCGGCTACACGCCGC
TGGCTTCGCATAAAACAGAAAGCTAAGNGGCCACCGAGCTATCCGTGTGA
ATGGCTCCCAACCTAGGAAACCAGCTACACGCCGCTGGCTTCGCATTAAA
CAGAAAGCAAAAAGCTTTTTGCATGGTGCGCATAAAGTGGTCACAAAAGC
TCAAGAGTACGCGCCACACATCTTGAAAGGGATTAAATATGGTGCTATGT
TGTTAGGTAAGAAGAAGCGAGAATTAAGGGCATTGGAAACGAGACAAAAG
CATTTGAAGCGTCAAATCCAAATATTAGAAGATGAAGTTATGAAAAAGAA
AAAGTAGACAGATTTTCAAGTATTCGACATAATGTATTTTTTTTGTAAAT
TTTTATACCACTTTTTGTAAACTATTGATTGTTTTTCCCCATGTTTTCTT
CTGTGAAAATATATAGATTTCAAATGTGCAAGAGGATAAAACTTTCGGGT
CCCTTAATATGCAGTCCCCCCCCCCCTCCACCTATAACCAAATAGCAATG
TTCAAAATGAAAGGTACTAGAATTAAGGAAGAGTGAAATTTGTATATTTT
CCTAAGAGTTGCAGAAAAAAAGTTGTTATTGACAAAATATCCCTTAAAAT
TATAATGGTTTGATAAATTTATGAAAATGAAAATAATCTAATTCATAATA
AGGATTAAAAGAATTTTTTNN

Coding sequence (CDS) from alignment at scaffold_314:51679..52799-

>TCONS_00058863 ID=TCONS_00058863|Name=TCONS_00058863|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_314:51679..52799- (Clytia hemisphaerica)
CTTTTTGCATGGTGCGCATAAAGTGGTCACAAAAGCTCAAGAGTACGCGC
CACACATCTTGAAAGGGATTAAATATGGTGCTATGTTGTTAGGTAAGAAG
AAGCGAGAATTAAGGGCATTGGAAACGAGACAAAAGCATTTGAAGCGTCA
AATCCAAATATTAGAAGATGAAGTTATGAAAAAGAAAAAGTAGGAAAAGA
AGGAGTGGATCAAGAAGAAGAAGAGGAAGACCTAGATGAAATTGATTTGG
ACGAAATTTATGCAAAACATGACCCCTTCTGGTGGTCCTCCAAAAGTAAA
CAAAAACAAAATACTGGCCACCAAGCTATCAGTGTGAATGCCTCCCAACC
TAGGAAACCGGCTACACGCCGCTGGCTTCGCATAAAACAGAAAGCTAAGN
GGAGAAAGAAGAAGAAATCGAGAATGCATTGTTGAAAGCCATTGCTGAGG
AAGAACAAGAATTGCAAGCTTTTTGCATGGTGCGCATAAAGTGGTCACAA
AAGCTCAAGAGTACGCGCCACACATCTTGAAAGGGATTAAATATGGTGCT
ATGTTGTTAGGTAAGAAGAAGCGAGAATTAAGGGCATTGGAAACGAGACA
AAAGCATTTGAAGCGTCAAATCCAAATATTAGAAGATGAAGTTATGAAAA
AGAAAAAGTAGGAAAAGAAGGAGTGGATCAAGAAGAAGAAGAGGAAGACC
TAGATGAAATTGATTTGGACGAAATTTATGCAAAACATGACCCCTTCTGG
TGGTCCTCCAAAAGTAAACAAAAACAAAATACTGGCCACCAAGCTATCAG
TGTGAATGCCTCCCAACCTAGGAAACCGGCTACACGCCGCTGGCTTCGCA
TAAAACAGAAAGCTAAGNGGAGAAAGAAGAAGAAATCGAGAATGCATTGT
TGAAAGCCATTGCTGAGGAAGAACAAGAATTGCAAGCTTTTTGCATGGTG
CGCATAAAGTGGTCACAAAAGCTCAAGAGTACGCGCCACACATCTTGAAA
GGGATTAAATATGGTGCTATGTTGTTAGGTAAGAAGAAGCGAGAATTAAG
GGCATTGGAAACGAGACAAAAGCATTTGAAGCGTCAAATCCAAATATTAG
AAGATGAAGTTATGAAAAAGAAAAAGTAGGAAAAGAAGGAGTGGATCAAG
AAGAAGAAGAGGAAGACCTAGATGAAATTGATTTGGACGAAATTTATGCA
AAACATGACCCCTTCTGGTGGTCCTCCAAAAGTAAACAAAAACAAAATAC
TGGCCACCAAGCTATCAGTGTGAATGCCTCCCAACCTAGGAAACCGGCTA
CACGCCGCTGGCTTCGCATAAAACAGAAAGCTAAGNGGAGAAAGAAGAAG
AAATCGAGAATGCATTGTTGAAAGCCATTGCTGAGGAAGAACAAGAATTG
CAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037080XLOC_037080Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058863-proteinTCONS_00058863-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058863-exon-scaffold_314-1575043694:52731..52799TCONS_00058863-exon-scaffold_314-1575043694:52731..52799Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1575043694:52321..52528TCONS_00058863-exon-scaffold_314-1575043694:52321..52528Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1575043694:51679..52235TCONS_00058863-exon-scaffold_314-1575043694:51679..52235Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1510915933:52731..52799TCONS_00058863-exon-scaffold_314-1510915933:52731..52799Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1510915933:52321..52528TCONS_00058863-exon-scaffold_314-1510915933:52321..52528Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1510915933:51679..52235TCONS_00058863-exon-scaffold_314-1510915933:51679..52235Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1491911889:52731..52799TCONS_00058863-exon-scaffold_314-1491911889:52731..52799Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1491911889:52321..52528TCONS_00058863-exon-scaffold_314-1491911889:52321..52528Clytia hemisphaericaexon
TCONS_00058863-exon-scaffold_314-1491911889:51679..52235TCONS_00058863-exon-scaffold_314-1491911889:51679..52235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:51679..52799 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15705	1.77134	1.41397	0.503037	0.07655	0.0604908	0.437877	0.478258	0.239171	0.414753	0.690119	0.189024	17.4038	16.5057	4.31918	11.7262	9.84356	9.82727	7.96512	2.14687	39.0218	41.8415	5.5973	8.3432	6.5821	7.071	1.5567	0.913747	0.252016	0.513529
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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