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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058865 ID=TCONS_00058865|Name=TCONS_00058865|organism=Clytia hemisphaerica|type=transcript|length=3989bpRun BLAST on NCBI protein sequence of TCONS_00058865-protein >TCONS_00058865-protein ID=TCONS_00058865-protein|Name=TCONS_00058865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp MCGRTAITKSAGEIADACSYRGRNNEVQKPTWKGNGSKTYNGSYNKGPKSRun BLAST on NCBI transcript from alignment at scaffold_314:89688..111978- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058865 ID=TCONS_00058865|Name=TCONS_00058865|organism=Clytia hemisphaerica|type=transcript|length=22291bp|location=Sequence derived from alignment at scaffold_314:89688..111978- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_314:89688..111978- >TCONS_00058865 ID=TCONS_00058865|Name=TCONS_00058865|organism=Clytia hemisphaerica|type=CDS|length=7512bp|location=Sequence derived from alignment at scaffold_314:89688..111978- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058865 vs. Swiss-Prot (Human)
Match: HMCES (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Homo sapiens GN=HMCES PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 1.134e-67 Identity = 135/313 (43.13%), Postives = 183/313 (58.47%), Query Frame = 1
Query: 202 MCGRTAITKSAGEIADACSYRGRNNEVQKPTWKGNGSKTYNGSYNKGPKSCSPILLQNRLQHSGTNEELSERIIMPMQWGMVPSWHK-GDPKKFNFNMINCRCDTITEKKSFAKALENGQRCVVLAEGFYEWHTENGN--KQPYYIQLKDSITPHLQFNKEIENEEDGSCQMKKSGK---------QLLTMAGLFDKHVSEEQGE-LYTYTIITVDSSSSIKWLHHRMPAILETPESVERWLDAANVSDEKALELLKPTNCLEWYPVSEVVNNVRNDTSDCIKKIDL-AKIKARKAKSGMLMANWLKKGEKRK 1098
MCGRT+ + AC+Y+ R + + P W+ Y SYNK P+S SP+LL +RL H + + SERII PM+WG+VPSW K DP K FN NCR DT+ EK+SF L G+RCVVLA+GFYEW G +QPY+I + +I+ E+ GS S + +LLTMAG+FD E G+ LY+YTIITVDS + +HHRMPAIL+ E+V +WLD VS ++AL+L+ PT + ++ VS VVNN RN+T +C+ +DL K + R + S M WL +K
Sbjct: 1 MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRD--PDKYCPSYNKSPQSNSPVLL-SRL-HFEKDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVVLADGFYEWQRCQGTNQRQPYFI-----------YFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRASGSSQRMLQWLATKSPKK 298 The following BLAST results are available for this feature:
BLAST of TCONS_00058865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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