|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058921 ID=TCONS_00058921|Name=TCONS_00058921|organism=Clytia hemisphaerica|type=transcript|length=2685bp
CATATTCTGTTCTTATAACTCTTTATCTTTTCTAATAAAAAGATgttgat
aattttataagtttGTTTGATCTGTTAATATTATGATTCactattttcaa
tttcaaagtctGATATCATAATGTGATGACTTACATAgaaaaaagcataa
aaaatgCTAAGCTAAGgttatttctaaatttacacACCAGGGGAActaca
aaatttttaaacaaaaatgaatTTAGACAAACATTAAACAAAATCATGTC
TCAACATATTTTGGAACTATCCACGAAAACAAACTACTGCACATACACAA
GAAGGgcaaaaaacatagaaaaaatgacatttgtAAAGCACATTTTCATT
tagattttcatatttttttctcaaaaaagggtTATTTACATATTgtacaa
aatttaaatttaaaaaagggaACGTCCTTTAGGAACATTCGTGGTTTTTG
ATAGAATCTTCTAAATACTatcttattcttatttttcattattttttttg
gtataTATCCCAATGTACAAATTAAGATGATATAGACAAAATCTTAAAGC
TATGATGAATAAAATCCATAGCAAATAAACATTTAGAAAATCACAGAAGG
ACACAcactaaaattgcaatcaaATATATACGCGACAAAAGACCGAGTAG
GAGAAGAGTACAATACCCttttttatcttgaaaataGAGAGCGCTTGCTA
ATCAACAGAGGGAATTAATAAtgaaatgagaaagaaaaagggtTGAGATC
TACATAGAGGGAAGTGTAAAAATATTAAAGGGACAGACTGAAAACAAACG
gagaagaaacaaaaagttttaaaacaagtgaaaaagaaaacatgtcTATC
ATGGCGAAGACTTTGCTGCATTAAAATATAGTATTCAGAATGTCTATGTT
TGACCTCATTGTGTGTATTTAAAGTGCTGTCTGTGGCCGAAGCATGGGAT
CTTTAAACAGATATCGTCGATAGACGTTTCTTCAAAATGAATCACTACAA
TGAAAACTGTTGAAATTTTAATCAAACCATCCAATGTTTATTAACGTCAT
AGAGATAAATGGCGACCACACTTTATTCGGAATTCAGCTTGAAATTCAAA
GCAAAGATGAATCAAGGCTTCATTCAAATACATGAGAATTCACTCATTCA
AATGCCGGCATATTTTCGAGCATCAAAACTTGCTTTTGAAAGCATAATAc
aatgaagcaattttgaagTGGATTCCTCTGATAATATAAAAATGATTACt
aaacaatattcaatcaaacGACGTGTGttcaattaaaaatgacattttca
ttgttttttcatGATGACAAAACCAAAATTGACATCCGATAATTATTAAT
CATTACGTAATTGAGATCAAACAACACAACACGTATCAACAtctaatact
ttcaacacctcccactgaaaaacatgaaaaaacttCCCTCAAAGCTTCTC
AACATGCCACCATTGCTGAAACAAACTTGTTCCTCAAGTCCAAACTTTTA
TCTGATTCTGAATGAGCAACAAGATTTCCAAACAAGGAAGACAAACTTGT
AACAGAAAAATTGGGTTCTTGTACTTTCTGGTCGATATTTGGAGTCCACA
ATGAACGAAGCCGCTTACGAGGGCAGTcactttccaaaatttcaattgAA
TGAAGCCTCTTTTTTGATCGTTTTAATGGCGACGACTCGTAACTTGAACA
GTTATAAACAAGTTTAATACTATCACAACTACAAGCCGAACTTTTATCTT
CATGtccaatattttctttcatttcaatcGATTCATCATGATTCGAAACA
GTTCTTGATAAAGCGTTGACTTTGCCAATAGATCGTGTATGAAGTTTCGT
AACAACTGAGCTCTGTTTCTTTGATAAAGGAGACGGTGTGAttctttgtt
gttgttgggAAAAGTTTCTATCCTTCACTGGAACCTTGTCCATATCGTAA
TCTTCAGTGTCCAAATCAATGATAAGTCTTGATTCTCTGTAGTTCATTAA
TGGTTGTATACGAGTCTTTCCAGTTTCTGTTTCTCTGCTGACTTTGTTGA
GTAGTGAGTTGACGAGCAGATTCTTGTGTAACTTTCCTGTACCTTTCTTC
TTAGCCTTCGAGTTTTCAATTTTAGCAAGCgatatttcaatgattttttc
tgtGTCAGACATAATTTTCGTATATCACTTTTATTGAAAACAGTTCTCTT
TCGTcctcagttttttcaaaataaactgAAGAGAGATTATAATCACACAC
ACAAGCTGCTTTTTGCCAGAAACTTTTCCCGAATCAATGTTTATGAAATG
AATGAAACTACTAGTACAAAGGGCGGCAAAACCATGTGTTCTTACGTCAT
TAAacttttaagccaatcaaattttgttttgatcagagcaacagccaatc
agaatcgGGTATTAGCTTTTTATTTACGTTTTGCGTAATAGCAGAGCTTT
CGTTTCTAATTGTGATGTCGCGCTCCCCCATAGTGACTTTTGAATCAAGT
TAGTATGAAAGTTTTCCTTTGTCAGGgtttaataaaaatttaatccTATA
TCAACAGCATGAATTAAAATAAATAGTATACCTCTGTGAAATGAAAGAGA
ACTCAATCAAAATTTCGACCAGTCTTTTTAATTAATTCTGAAATTATATA
CGACGGAGACCAATTCAAGCTTTGCATATACTTTT Run BLAST on NCBI protein sequence of TCONS_00058921-protein >TCONS_00058921-protein ID=TCONS_00058921-protein|Name=TCONS_00058921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MSDTEKIIEISLAKIENSKAKKKGTGKLHKNLLVNSLLNKVSRETETGKT
RIQPLMNYRESRLIIDLDTEDYDMDKVPVKDRNFSQQQQRITPSPLSKKQ
SSVVTKLHTRSIGKVNALSRTVSNHDESIEMKENIGHEDKSSACSCDSIK
LVYNCSSYESSPLKRSKKRLHSIEILESDCPRKRLRSLWTPNIDQKVQEP
NFSVTSLSSLFGNLVAHSESDKSLDLRNKFVSAMVAC Run BLAST on NCBI transcript from alignment at scaffold_314:130449..133133 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058921 ID=TCONS_00058921|Name=TCONS_00058921|organism=Clytia hemisphaerica|type=transcript|length=2685bp|location=Sequence derived from alignment at scaffold_314:130449..133133 (Clytia hemisphaerica)
AAAAGTATATGCAAAGCTTGAATTGGTCTCCGTCGTATATAATTTCAGAA
TTAATTAAAAAGACTGGTCGAAATTTTGATTGAGTTCTCTTTCATTTCAC
AGAGGTATACTATTTATTTTAATTCATGCTGTTGATATAggattaaattt
ttattaaacCCTGACAAAGGAAAACTTTCATACTAACTTGATTCAAAAGT
CACTATGGGGGAGCGCGACATCACAATTAGAAACGAAAGCTCTGCTATTA
CGCAAAACGTAAATAAAAAGCTAATACCcgattctgattggctgttgctc
tgatcaaaacaaaatttgattggcttaaaagtTTAATGACGTAAGAACAC
ATGGTTTTGCCGCCCTTTGTACTAGTAGTTTCATTCATTTCATAAACATT
GATTCGGGAAAAGTTTCTGGCAAAAAGCAGCTTGTGTGTGTGATTATAAT
CTCTCTTcagtttattttgaaaaaactgaggACGAAAGAGAACTGTTTTC
AATAAAAGTGATATACGAAAATTATGTCTGACacagaaaaaatcattgaa
atatcGCTTGCTAAAATTGAAAACTCGAAGGCTAAGAAGAAAGGTACAGG
AAAGTTACACAAGAATCTGCTCGTCAACTCACTACTCAACAAAGTCAGCA
GAGAAACAGAAACTGGAAAGACTCGTATACAACCATTAATGAACTACAGA
GAATCAAGACTTATCATTGATTTGGACACTGAAGATTACGATATGGACAA
GGTTCCAGTGAAGGATAGAAACTTTTcccaacaacaacaaagaaTCACAC
CGTCTCCTTTATCAAAGAAACAGAGCTCAGTTGTTACGAAACTTCATACA
CGATCTATTGGCAAAGTCAACGCTTTATCAAGAACTGTTTCGAATCATGA
TGAATCgattgaaatgaaagaaaatattggaCATGAAGATAAAAGTTCGG
CTTGTAGTTGTGATAGTATTAAACTTGTTTATAACTGTTCAAGTTACGAG
TCGTCGCCATTAAAACGATCAAAAAAGAGGCTTCATTcaattgaaatttt
ggaaagtgACTGCCCTCGTAAGCGGCTTCGTTCATTGTGGACTCCAAATA
TCGACCAGAAAGTACAAGAACCCAATTTTTCTGTTACAAGTTTGTCTTCC
TTGTTTGGAAATCTTGTTGCTCATTCAGAATCAGATAAAAGTTTGGACTT
GAGGAACAAGTTTGTTTCAGCAATGGTGGCATGTTGAGAAGCTTTGAGGG
aagttttttcatgtttttcagtgggaggtgttgaaagtattagaTGTTGA
TACGTGTTGTGTTGTTTGATCTCAATTACGTAATGATTAATAATTATCGG
ATGTCAATTTTGGTTTTGTCATCatgaaaaaacaatgaaaatgtcatttt
taattgaaCACACGTCgtttgattgaatattgtttaGTAATCATTTTTAT
ATTATCAGAGGAATCCActtcaaaattgcttcattgTATTATGCTTTCAA
AAGCAAGTTTTGATGCTCGAAAATATGCCGGCATTTGAATGAGTGAATTC
TCATGTATTTGAATGAAGCCTTGATTCATCTTTGCTTTGAATTTCAAGCT
GAATTCCGAATAAAGTGTGGTCGCCATTTATCTCTATGACGTTAATAAAC
ATTGGATGGTTTGATTAAAATTTCAACAGTTTTCATTGTAGTGATTCATT
TTGAAGAAACGTCTATCGACGATATCTGTTTAAAGATCCCATGCTTCGGC
CACAGACAGCACTTTAAATACACACAATGAGGTCAAACATAGACATTCTG
AATACTATATTTTAATGCAGCAAAGTCTTCGCCATGATAgacatgttttc
tttttcacttgttttaaaactttttgtttcttctcCGTTTGTTTTCAGTC
TGTCCCTTTAATATTTTTACACTTCCCTCTATGTAGATCTCAaccctttt
tctttctcatttcaTTATTAATTCCCTCTGTTGATTAGCAAGCGCTCTCt
attttcaagataaaaaaGGGTATTGTACTCTTCTCCTACTCGGTCTTTTG
TCGCGTATATATttgattgcaattttagtgTGTGTCCTTCTGTGATTTTC
TAAATGTTTATTTGCTATGGATTTTATTCATCATAGCTTTAAGATTTTGT
CTATATCATCTTAATTTGTACATTGGGATAtataccaaaaaaaataatga
aaaataagaataagatAGTATTTAGAAGATTCTATCAAAAACCACGAATG
TTCCTAAAGGACGTtcccttttttaaatttaaattttgtacAATATGTAA
ATAacccttttttgagaaaaaaatatgaaaatctaAATGAAAATGTGCTT
TacaaatgtcattttttctatgttttttgcCCTTCTTGTGTATGTGCAGT
AGTTTGTTTTCGTGGATAGTTCCAAAATATGTTGAGACATGATTTTGTTT
AATGTTTGTCTAAattcatttttgtttaaaaattttgtagTTCCCCTGGT
gtgtaaatttagaaataacCTTAGCTTAGcattttttatgcttttttcTA
TGTAAGTCATCACATTATGATATCagactttgaaattgaaaatagtGAAT
CATAATATTAACAGATCAAACaaacttataaaattatcaacATCTTTTTA
TTAGAAAAGATAAAGAGTTATAAGAACAGAATATG Coding sequence (CDS) from alignment at scaffold_314:130449..133133 >TCONS_00058921 ID=TCONS_00058921|Name=TCONS_00058921|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_314:130449..133133 (Clytia hemisphaerica)
ATGTCTGACacagaaaaaatcattgaaatatcGCTTGCTAAAATTGAAAA
CTCGAAGGCTAAGAAGAAAGGTACAGGAAAGTTACACAAGAATCTGCTCG
TCAACTCACTACTCAACAAAGTCAGCAGAGAAACAGAAACTGGAAAGACT
CGTATACAACCATTAATGAACTACAGAGAATCAAGACTTATCATTGATTT
GGACACTGAAGATTACGATATGGACAAGGTTCCAGTGAAGGATAGAAACT
TTTcccaacaacaacaaagaaTCACACCGTCTCCTTTATCAAAGAAACAG
AGCTCAGTTGTTACGAAACTTCATACACGATCTATTGGCAAAGTCAACGC
TTTATCAAGAACTGTTTCGAATCATGATGAATCgattgaaatgaaagaaa
atattggaCATGAAGATAAAAGTTCGGCTTGTAGTTGTGATAGTATTAAA
CTTGTTTATAACTGTTCAAGTTACGAGTCGTCGCCATTAAAACGATCAAA
AAAGAGGCTTCATTcaattgaaattttggaaagtgACTGCCCTCGTAAGC
GGCTTCGTTCATTGTGGACTCCAAATATCGACCAGAAAGTACAAGAACCC
AATTTTTCTGTTACAAGTTTGTCTTCCTTGTTTGGAAATCTTGTTGCTCA
TTCAGAATCAGATAAAAGTTTGGACTTGAGGAACAAGTTTGTTTCAGCAA
TGGTGGCATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058921-exon-scaffold_314-1491911889:130449..133133 | TCONS_00058921-exon-scaffold_314-1491911889:130449..133133 | Clytia hemisphaerica | exon |
| TCONS_00058921-exon-scaffold_314-1510915933:130449..133133 | TCONS_00058921-exon-scaffold_314-1510915933:130449..133133 | Clytia hemisphaerica | exon |
| TCONS_00058921-exon-scaffold_314-1575043694:130449..133133 | TCONS_00058921-exon-scaffold_314-1575043694:130449..133133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:130449..133133 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008653 | IER |
Blast
The following BLAST results are available for this feature:
|
