TCONS_00058875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058875
Unique NameTCONS_00058875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1897

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058875 ID=TCONS_00058875|Name=TCONS_00058875|organism=Clytia hemisphaerica|type=transcript|length=1897bp
AGAGAGGAGCTCCGGAAGAAAATTTCGCAATGGACACCAGATGACGTGCG
TAAATGGATCACATCCAACAAACTGAAAGTAAATGGTGACGTCATCGTTA
AACATTTAGATGGATACGTTTTACTCCACTTATTCGACCTTCGAAAAGAG
gctCCAGATACATTCTACAAGTTCTTAAAGAAAGACCTCGCATTGGATAC
GCTGAAAAATCTATTCCAATTTGCGGACTGTCTGGCCAAACTTTTGGACG
ATACATGAAATTCTTAAGCCTGAAATTTGCAGATAAAGAGGTTGCGTGAA
ATAGTGGCGACTACCTGTGCTTGTAACATTGCAACAATTTGAACGATATT
AACAAAACATTGACTAAATGAAACCAACACTGTGCGATGTATACAATGTG
TGTTGAATAACGTAACGATCGCCGTACTCTCTAATGTAATGAATGGGAAA
ATAATTCTTGGAATATAATAACGACCGAAATTCTCCTGAGGACCAAATGA
TAACTAACATCATTGAAAAGTAATTCCAGTATGAGATTTATATCTATCAT
CCAAAATAAACAATGAGTATAATAAATTTACAAGAATGCGGCAATACTAT
GATATCAATGAAGTTATCGTCTTTTATGCTCCATACAAATCATTGGAGAT
TGTTTTCGTTTGTCTGCGTTTCGCTGTTTTGGTATGAATTGTATAACACA
ATGGTTGAAGCAAACAGTATGAGAAAGCCAAGTTCACCAATAGGTTGAAA
GCACCGTCGCTTTTAAAAGCATGATCAGTGTTTTGAGTGTTTATACAATA
AATTGGAAGTGGGAGCAAGCAAATCACAAATAAAACGATGAAAATGCCAA
GAAGTTTGATAAGTTTAATCTCGAAAAGATTATTAAAACGTTTCTGATAT
GCTAaatcaatgataaaatgttGTTTGTTGGTTTGAATGTTCGATTGTAG
CTCGATTTCTTCCTCGATTCGCTGAAACGGCTTGGTTTGTATTTGTTTAG
CGCTACTTAAATTACGACATTTCTCCGAGTTACAGTAAAACGTGTGAAGA
AAATATTGATTCTGTTGTCTGCGTATGGTTGACATTATACGTCCGTATAA
AACTACGATGATTATTGTTCCTGGGATGATTATAAAGGACGCGTAATACG
TGAAAAACTCCTCGTAATTGCGAACATCGACGTCGAAAAGGTAGTGCAAT
ACTAACACAATGAAGCATGTTAAGCACCAAGCTGCGATGCAAATTCGAAT
GTATATCTTACGATTGATGCGTCTATAAAAATCCTTGTTGGTAACAGCTA
GGTAACGAATCGCAACAAAAATGATCAACTTTAGTGAAACTATCGTCAAC
GCGATACGCGCCAATAAACTTCGGTAATAAAAGAGTTCGACGTGACTGCT
GGTTGATCCTTCTTTAACAGCGATATATATTAAAGTTGAAACACTGACCA
GCCAGTTTGTGATGCCGCAGTGGATGAAAAATATTGACGTCACATTGAGC
ACCAGACCTCTTTTCTTGGAATATAGCATCAGTAATTTTAATGTGTTGAG
CACAATGGATAAGATTGCGATCAAGAGTCGTAACTTATCGGTGACGTTTA
TGGAATCCATTTTGATTTTGTGGTAAGTGGTAGCACActctaaaatgaca
aaatatggttgtttatttatatttatttattaaatttgatcatgtattta
tttttctaaattattttgattGCTGTACATAAATATTTTGTAgctaataa
atttcataaaCACTAATAGAAAAAAGAtcaatagaataaaaaaattaata
tgtTGGTTGTAGATTGCAATGAGACGTGAGAGATTCTGCgcttatttgaa
attttcagttatctgtaaactATGAATGGCGAAGTCTATGAAAAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_314:234177..237372-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058875 ID=TCONS_00058875|Name=TCONS_00058875|organism=Clytia hemisphaerica|type=transcript|length=3196bp|location=Sequence derived from alignment at scaffold_314:234177..237372- (Clytia hemisphaerica)
AGAGAGGAGCTCCGGAAGAAAATTTCGCAATGGACACCAGATGACGTGCG
TAAATGGATCACATCCAACAAACTGAAAGTAAATGGTGACGTCATCGTTA
AACATTTAGATGGATACGTTTTACTCCACTTATNCATTCTCCATATTGGA
TTGGTTCTCAAATTTTGCTTTTATGTAGATTATTTTTAGTAGGATTTCTG
ACTTATCTCTTAATGGTTTAAAATTTGTAATGTTGACCTCTTGTAAAAAT
TCAAACACCTTTGTCCACACTTTCACTTTTTTGCATTCAATCGATTTAGT
CTTGAAGCCTCAACCTAGTCCTCAACCATCCACAAAATTCAACGATCGAG
AGGAGCTCCGGAGAAAAATTTCGCAATGGACACCAGATGACGTGCGTAAA
TGGATCACATCCAACGAACTGATAGTAAATGATGACGTCATCGTTAAACA
TTTAGATGGATACGTTTTACTCCACTTATTCGACCTTCGAAAAGAGGTGT
GTATAGAGAAGATTGTTCGTTATTACACTCTTCCTCTATTGACAAAAAAG
CGTATATAGCGAGTAGAAAGAGATTAATCCAATAGAATTAGGTTTTACCT
CGAAAATGATATGTGGCTGAATTGAATGTGCTCACCCAGCAAAAATCATT
GACCTTAAAACCTATAACTCCCTTAGTTTATATGTCTTTGTGTCCGATGG
AACTTTTTTACTCGTGTGTTTGAAGCTTTTCTTCGAAATTCTATCGAGGG
TCTTATGTATAAACCCAACAAAACAAAGCAGGCTATGCCATTTTTTCCCA
TTTTCTTTAAAATGCGGAGAAGATTGTTGTGAAATATTGCTGGTGAGATA
AAGGCCATTTTCTCACTTGATTATTACCGTTTGAGATTTCAAAGTTATGA
ACAAAGGTTCGAGAAGAACAAAAACACATTGTGACAAATCTGACTTTATA
ATCCTGATTAAAAAAAAAGTAGTAGAGTTTCCTCTCTAAATTTTATAAAT
CCCATCTTTCCTATACTTCATTTGATGTATCGTTTGTTCAGGAAGAAAGG
TTTTAGACAATCAGTGGGAGGGGACATAAAACCAACCCACTCAACAAGCT
TTATTTAGTGTAGTGCTCTTTTAATAAGATTTAAAAAAGAATGTATGCGA
ACTATATTACTTCGGATGCAAGCTCCTAACTTTCTCTGTATCACCGGGAT
ACGCCCTGTATCACCGGGATCCCCCTAGCCACTGAAAAGTCTGTCTAAGA
ATCAAGAGCTGTTTCAATCTTAAATACCCAGAGATCTCCATTAAACAACT
ATACTTAACACTTTCTTGCACTTATCCCAACAGGCTAAAGTTTTGTTCGA
GTTTTGAGCAATCTTTGTAATCCGACGTCAATGGGCAGAGAATGTTTGTG
CCCTGCTCTTTCAGCTACAAATTGAATATTGATACTTTTTTTATTTTAGG
CTCCAGATACATTCTACAAGTTCTTAAAGAAAGACCTCGCATTGGATACG
CTGAAAAATCTATTCCAATTTGCGGACTGTCTGGCCAAACTTTTGGACGA
TACATGAAATTCTTAAGCCTGAAATTTGCAGATAAAGAGGTTGCGTGAAA
TAGTGGCGACTACCTGTGCTTGTAACATTGCAACAATTTGAACGATATTA
ACAAAACATTGACTAAATGAAACCAACACTGTGCGATGTATACAATGTGT
GTTGAATAACGTAACGATCGCCGTACTCTCTAATGTAATGAATGGGAAAA
TAATTCTTGGAATATAATAACGACCGAAATTCTCCTGAGGACCAAATGAT
AACTAACATCATTGAAAAGTAATTCCAGTATGAGATTTATATCTATCATC
CAAAATAAACAATGAGTATAATAAATTTACAAGAATGCGGCAATACTATG
ATATCAATGAAGTTATCGTCTTTTATGCTCCATACAAATCATTGGAGATT
GTTTTCGTTTGTCTGCGTTTCGCTGTTTTGGTATGAATTGTATAACACAA
TGGTTGAAGCAAACAGTATGAGAAAGCCAAGTTCACCAATAGGTTGAAAG
CACCGTCGCTTTTAAAAGCATGATCAGTGTTTTGAGTGTTTATACAATAA
ATTGGAAGTGGGAGCAAGCAAATCACAAATAAAACGATGAAAATGCCAAG
AAGTTTGATAAGTTTAATCTCGAAAAGATTATTAAAACGTTTCTGATATG
CTAAATCAATGATAAAATGTTGTTTGTTGGTTTGAATGTTCGATTGTAGC
TCGATTTCTTCCTCGATTCGCTGAAACGGCTTGGTTTGTATTTGTTTAGC
GCTACTTAAATTACGACATTTCTCCGAGTTACAGTAAAACGTGTGAAGAA
AATATTGATTCTGTTGTCTGCGTATGGTTGACATTATACGTCCGTATAAA
ACTACGATGATTATTGTTCCTGGGATGATTATAAAGGACGCGTAATACGT
GAAAAACTCCTCGTAATTGCGAACATCGACGTCGAAAAGGTAGTGCAATA
CTAACACAATGAAGCATGTTAAGCACCAAGCTGCGATGCAAATTCGAATG
TATATCTTACGATTGATGCGTCTATAAAAATCCTTGTTGGTAACAGCTAG
GTAACGAATCGCAACAAAAATGATCAACTTTAGTGAAACTATCGTCAACG
CGATACGCGCCAATAAACTTCGGTAATAAAAGAGTTCGACGTGACTGCTG
GTTGATCCTTCTTTAACAGCGATATATATTAAAGTTGAAACACTGACCAG
CCAGTTTGTGATGCCGCAGTGGATGAAAAATATTGACGTCACATTGAGCA
CCAGACCTCTTTTCTTGGAATATAGCATCAGTAATTTTAATGTGTTGAGC
ACAATGGATAAGATTGCGATCAAGAGTCGTAACTTATCGGTGACGTTTAT
GGAATCCATTTTGATTTTGTGGTAAGTGGTAGCACACTCTAAAATGACAA
AATATGGTTGTTTATTTATATTTATTTATTAAATTTGATCATGTATTTAT
TTTTCTAAATTATTTTGATTGCTGTACATAAATATTTTGTAGCTAATAAA
TTTCATAAACACTAATAGAAAAAAGATCAATAGAATAAAAAAATTAATAT
GTTGGTTGTAGATTGCAATGAGACGTGAGAGATTCTGCGCTTATTTGAAA
TTTTCAGTTATCTGTAAACTATGAATGGCGAAGTCTATGAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037087XLOC_037087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058875-exon-scaffold_314-1575043694:237270..237372TCONS_00058875-exon-scaffold_314-1575043694:237270..237372Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1575043694:236877..236923TCONS_00058875-exon-scaffold_314-1575043694:236877..236923Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1575043694:234177..235923TCONS_00058875-exon-scaffold_314-1575043694:234177..235923Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1510915933:237270..237372TCONS_00058875-exon-scaffold_314-1510915933:237270..237372Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1510915933:236877..236923TCONS_00058875-exon-scaffold_314-1510915933:236877..236923Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1510915933:234177..235923TCONS_00058875-exon-scaffold_314-1510915933:234177..235923Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1491911889:237270..237372TCONS_00058875-exon-scaffold_314-1491911889:237270..237372Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1491911889:236877..236923TCONS_00058875-exon-scaffold_314-1491911889:236877..236923Clytia hemisphaericaexon
TCONS_00058875-exon-scaffold_314-1491911889:234177..235923TCONS_00058875-exon-scaffold_314-1491911889:234177..235923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:234177..237372 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.803703	0.115168	0	0	0	0	0	0	0.0933392	0.2747	0	0.286024	0.161202	0	0.435543	0.262612	0.347641	0	0.36219	0.332392	0.126394	0.5726	0.569658	0.385065	0	0	0.21073	0.767251	0.653843	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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