|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058838 ID=TCONS_00058838|Name=TCONS_00058838|organism=Clytia hemisphaerica|type=transcript|length=1503bp
CGTACACCATTatgaattcaaaaaattaaaaatgctgaCGATGCAAATAC
GTCAACTTACGAGCttttgaccaatcaaattgGTCCACTTATACCAATTT
GGCCAATCGGGTCAAAACACGAAAactgattcaatttttctgGTCATATA
GCTCGAAAGAACACACGTTGATCTACAAAATCTCGTCCAAATCTAACTGG
AAGGTCGACTGGTGTTGTGGTTGTCCAACACTGAAACGTTTTCAAAGATG
AAGTGTATCTATTTCATTGCGCTACTTGTTGTAGCATGTTCTGTTTATtg
tgaagaagaaaagaaagaggaaaaagataaaaaagaaagtATCGGAACAG
TTGTTGGTATTGATCTTGGAACAACTTATTCTTGtgttggagtcttcaaa
aacgGACGTGTTGAAATCATCCCAAATGACCAAGGTAACCGTATCACTCC
ATCATATGTTGCTTTCACCAGTGAAGGTGAAAGATTGATTGGTGATGCTG
CCAAGAATCAGTTGACATCCAACCCTGAAAACACTGTCTTTGATGCCAAA
CGTTTGATTGGACGTGAATGGAGTGAAAAATCAGTTCAATCTGACATCAA
ATATTTCCCATTTAAAGTCGTGCAGAAGGGAGGCAAACCACACATTACAG
TCGATGTCAAAGAAGGAGAAGCAAAAACTTTTGCTGCTGAAGAAATCAGT
GCTATGGTCTTGAACAAAATGAAgGACATTGCTGAAGCTTACTTGGGAAA
GAAAGTAACCCATGCCGTTGTCACTGTCCCAGCCTACTTCAATGATGCCC
AACGTCAAGCCACCAAGGATGCTGGAACCATCTCTGGATTAAATGTTATG
AGAATCATTAACGAACCAACTGCTGCTGCCATTGCTTACGGTTTGGACAA
GAAAGAAGGAGAAAAGAACATCCTTGTCTTCGATTTGGGAGGTGGTACCT
TCGATGTTTCCCTTTTGACCATTGACAATGGGGTCTTTGAAGTTGTTTCC
ACCAGTGGAGATACTCATCTTGGAGGTGAAGATTTCGATCAACGTGTCAT
GgaatattttgtcaaaatctacaaaaagaaGAAGGGAAAAGACATCAGAA
AGGACAACCGTGCCCTCCAAAAACTCCGACGTGAAGTTGAAAAAACCAAA
CGTGCCCTCAGTACTGCCCATCAAGCCAGAGTTGAAGTTGAATCTTTGTT
TGATGGTGAAGACTTCTCTGAAACCTTAACCAGAGCTAAATTCGAAGAAT
TGAACATGGATCTTTTCAAATCAACCCTCAAACCAGTTAAGCAAGTCTTG
GATGACTCTGGTCTTAAAAAATCGGAAATTGACGAAATTGTCCTTGTTGG
TGGTTCCACTCGTATCCCCAAAGTCCAATCTTTGGTCAAAGATTTCTTCG
GTGGAAAAGAACCAAGTAGAGGTAAATAACATTTTGATTAAAGATATGGT
TTATACCCTACTTTTTGCCAAAACACACGTTTTGAAGCAAAACAGCACTT
ACA Run BLAST on NCBI transcript from alignment at scaffold_314:441250..443539+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058838 ID=TCONS_00058838|Name=TCONS_00058838|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at scaffold_314:441250..443539+ (Clytia hemisphaerica)
CGTACACCATTatgaattcaaaaaattaaaaatgctgaCGATGCAAATAC
GTCAACTTACGAGCttttgaccaatcaaattgGTCCACTTATACCAATTT
GGCCAATCGGGTCAAAACACGAAAactgattcaatttttctgGTCATATA
GCTCGAAAGAACACACGTTGATCTACAAAATCTCGTCCAAATCTAACTGG
AAGGTCGACTGGTGTTGTGGTTGTCCAACACTGAAACGTTTTCAAAGATG
AAGTGTATCTATTTCATTGCGCTACTTGTTGTAGCATGTTCTGTTTATtg
tgaagaagaaaagaaagaggaaaaagataaaaaagaaagtATCGGAACAG
TTGTTGGTATTGATCTTGGAACAACTTATTCTTGGTAAGATTTTCACTTC
TCAGCAAGACAAGACaagtttcaattaaattaagcCCAGCTATCGAATTC
TCTGACACAAAAGTAAAAcaaggaaaaacaaaaattttgtatCTAATTTC
TGGGAAGTTCATAATTGGTTTTTTTCTTGGGTATAATACAATCAGATCTG
ACATTTGGTCTGCTCTAATCGAGTAGTGAAATCTGTCTtgacttaaaggg
ataatcagatggtttgagatatttgtcGCGTGGAGTCTATCTATTGTCCT
GAGCtaaacctcaaaatatttttgcctaaatattttccaaagttgagaTA
TGTTATAAACTACaagtttttgacaaaaatacttgGCAATTTTATTCAAA
ACCACTGAGggtttcttcaggcaaaaaaattcaaaccatctgattatttC
TTTAAGAGTTATATAGTAATATTTGGTGAAATCTAAATCCTAACGTTTCA
AGTggtttaattattttttcagtgttggagtcttcaaaaacgGACGTGTT
GAAATCATCCCAAATGACCAAGGTAACCGTATCACTCCATCATATGTTGC
TTTCACCAGTGAAGGTGAAAGATTGATCGGTGATGCTGCCAAANTCAGtg
ttggagtcttcaaaaacgGACGTGTTGAAATCATCCCAAATGACCAAGGT
AACCGTATCACTCCATCATATGTTGCTTTCACCAGTGAAGGTGAAAGATT
GATTGGTGATGCTGCCAAGAATCAGTTGACATCCAACCCTGAAAACACTG
TCTTTGATGCCAAACGTTTGATTGGACGTGAATGGAGTGAAAAATCAGTT
CAATCTGACATCAAATATTTCCCATTTAAAGTCGTGCAGAAGGGAGGCAA
ACCACACATTACAGTCGATGTCAAAGAAGGAGAAGCAAAAACTTTTGCTG
CTGAAGAAATCAGTGCTATGGTCTTGAACAAAATGAAggtaaatagaaaa
aaatgagaTATCAATTTGTGTTAAgttaatttttaaattaatgTTTTCCT
GTCTTCGTTTTGATGCTCAAGTTTTATGAAATCTCATAGTGATTCACAAA
AAGGTCTGTCTCTGCCTCACCTTGTAAAACATTCAgcaataatttttgtt
atatTCCATAGGACATTGCTGAAGCTTACTTGGGAAAGAAAGTAACCCAT
GCCGTTGTCACTGTCCCAGCCTACTTCAATGATGCCCAACGTCAAGCCAC
CAAGGATGCTGGAACCATCTCTGGATTAAATGTTATGAGAATCATTAACG
AACCAACTGCTGCTGCCATTGCTTACGGTTTGGACAAGAAAGAAGGAGAA
AAGAACATCCTTGTCTTCGATTTGGGAGGTGGTACCTTCGATGTTTCCCT
TTTGACCATTGACAATGGGGTCTTTGAAGTTGTTTCCACCAGTGGAGATA
CTCATCTTGGAGGTGAAGATTTCGATCAACGTGTCATGgaatattttgtc
aaaatctacaaaaagaaGAAGGGAAAAGACATCAGAAAGGACAACCGTGC
CCTCCAAAAACTCCGACGTGAAGTTGAAAAAACCAAACGTGCCCTCAGTA
CTGCCCATCAAGCCAGAGTTGAAGTTGAATCTTTGTTTGATGGTGAAGAC
TTCTCTGAAACCTTAACCAGAGCTAAATTCGAAGAATTGAACATGGATCT
TTTCAAATCAACCCTCAAACCAGTTAAGCAAGTCTTGGATGACTCTGGTC
TTAAAAAATCGGAAATTGACGAAATTGTCCTTGTTGGTGGTTCCACTCGT
ATCCCCAAAGTCCAATCTTTGGTCAAAGATTTCTTCGGTGGAAAAGAACC
AAGTAGAGGTAAATAACATTTTGATTAAAGATATGGTTTATACCCTACTT
TTTGCCAAAACACACGTTTTGAAGCAAAACAGCACTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058838-exon-scaffold_314-1491911889:441250..441633 | TCONS_00058838-exon-scaffold_314-1491911889:441250..441633 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1510915933:441250..441633 | TCONS_00058838-exon-scaffold_314-1510915933:441250..441633 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1575043694:441250..441633 | TCONS_00058838-exon-scaffold_314-1575043694:441250..441633 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1491911889:442122..442171 | TCONS_00058838-exon-scaffold_314-1491911889:442122..442171 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1510915933:442122..442171 | TCONS_00058838-exon-scaffold_314-1510915933:442122..442171 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1575043694:442122..442171 | TCONS_00058838-exon-scaffold_314-1575043694:442122..442171 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1491911889:442298..442587 | TCONS_00058838-exon-scaffold_314-1491911889:442298..442587 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1510915933:442298..442587 | TCONS_00058838-exon-scaffold_314-1510915933:442298..442587 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1575043694:442298..442587 | TCONS_00058838-exon-scaffold_314-1575043694:442298..442587 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1491911889:442761..443539 | TCONS_00058838-exon-scaffold_314-1491911889:442761..443539 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1510915933:442761..443539 | TCONS_00058838-exon-scaffold_314-1510915933:442761..443539 | Clytia hemisphaerica | exon |
| TCONS_00058838-exon-scaffold_314-1575043694:442761..443539 | TCONS_00058838-exon-scaffold_314-1575043694:442761..443539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:441250..443539 + |
Blast
BLAST of TCONS_00058838 vs. Swiss-Prot (Human)
Match: GRP78 (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2) HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0 Identity = 308/361 (85.32%), Postives = 339/361 (93.91%), Query Frame = 2
Query: 341 IGTVVGIDLGTTYSCVGVFKNGRVEIIPNDQGNRITPSYVAFTSEGERLIGDAAKNQLTSNPENTVFDAKRLIGREWSEKSVQSDIKYFPFKVVQKGGKPHITVDVKEGEAKTFAAEEISAMVLNKMKDIAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKKEGEKNILVFDLGGGTFDVSLLTIDNGVFEVVSTSGDTHLGGEDFDQRVMEYFVXXXXXXXXXXXXXXNRALQKLRREVEKTKRALSTAHQARVEVESLFDGEDFSETLTRAKFEELNMDLFKSTLKPVKQVLDDSGLKKSEIDEIVLVGGSTRIPKVQSLVKDFFGGKEPSRG 1423
+GTVVGIDLGTTYSCVGVFKNGRVEII NDQGNRITPSYVAFT EGERLIGDAAKNQLTSNPENTVFDAKRLIGR W++ SVQ DIK+ PFKVV+K KP+I VD+ G+ KTFA EEISAMVL KMK+ AEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTI+GLNVMRIINEPTAAAIAYGLDK+EGEKNILVFDLGGGTFDVSLLTIDNGVFEVV+T+GDTHLGGEDFDQRVME+F+K+YKKK GKD+RKDNRA+QKLRREVEK KRALS+ HQAR+E+ES ++GEDFSETLTRAKFEELNMDLF+ST+KPV++VL+DS LKKS+IDEIVLVGGSTRIPK+Q LVK+FF GKEPSRG
Sbjct: 27 VGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRG 387
The following BLAST results are available for this feature:
|
